Wall clock time and date at job start Mon Mar 30 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99760 * 2 1 4 4 C 1.53784 * 113.61372 * 210.00351 * 3 2 1 5 5 C 1.53790 * 87.07996 * 219.93691 * 4 3 2 6 6 C 1.52995 * 113.61243 * 139.98114 * 5 4 3 7 7 O 1.42899 * 109.47207 * 176.52918 * 6 5 4 8 8 C 1.35669 * 117.00461 * 180.02562 * 7 6 5 9 9 C 1.39310 * 119.81763 * 359.72132 * 8 7 6 10 10 C 1.36438 * 120.18902 * 179.76594 * 9 8 7 11 11 C 1.40833 * 119.80865 * 0.51016 * 10 9 8 12 12 C 1.41213 * 120.18190 * 179.72228 * 11 10 9 13 13 H 1.07997 * 119.99948 * 24.56830 * 12 11 10 14 14 C 1.39887 * 120.00155 * 204.57457 * 12 11 10 15 15 N 1.30882 * 120.00275 * 17.93053 * 14 12 11 16 16 Si 1.86803 * 120.00153 * 197.93382 * 14 12 11 17 17 H 1.48497 * 109.47140 * 89.99380 * 16 14 12 18 18 H 1.48497 * 109.47145 * 210.00177 * 16 14 12 19 19 H 1.48509 * 109.46706 * 329.99900 * 16 14 12 20 20 C 1.40839 * 119.64300 * 359.74277 * 11 10 9 21 21 C 1.36445 * 119.80679 * 0.02562 * 20 11 10 22 22 C 1.53780 * 87.17095 * 25.39240 * 5 4 3 23 23 H 1.08999 * 109.46812 * 299.99380 * 1 2 3 24 24 H 1.08998 * 109.47625 * 59.99746 * 1 2 3 25 25 H 1.09006 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.09003 * 112.85150 * 341.19552 * 3 2 1 27 27 H 1.09003 * 113.61389 * 105.38947 * 4 3 2 28 28 H 1.08996 * 113.61652 * 334.48615 * 4 3 2 29 29 H 1.09000 * 113.61163 * 270.79512 * 5 4 3 30 30 H 1.09000 * 109.47250 * 56.52769 * 6 5 4 31 31 H 1.09000 * 109.47326 * 296.52682 * 6 5 4 32 32 H 1.08002 * 119.90538 * 0.02562 * 9 8 7 33 33 H 1.07994 * 120.09956 * 180.25702 * 10 9 8 34 34 H 0.97003 * 120.00041 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.09867 * 179.97438 * 20 11 10 36 36 H 1.08002 * 119.90121 * 179.97438 * 21 20 11 37 37 H 1.08990 * 113.61916 * 89.15880 * 22 5 4 38 38 H 1.09007 * 113.61011 * 220.06461 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.3755 1.3719 -0.7046 5 6 3.8220 2.3199 0.4210 6 6 5.2537 2.0713 0.8997 7 8 5.6032 3.0471 1.8835 8 6 6.8493 2.9679 2.4142 9 6 7.7174 1.9617 1.9964 10 6 8.9739 1.8778 2.5215 11 6 9.3886 2.8057 3.4964 12 6 10.6852 2.7227 4.0495 13 1 11.4800 2.2476 3.4936 14 6 10.9403 3.2557 5.3174 15 7 9.9481 3.5089 6.1326 16 14 12.6970 3.6061 5.8472 17 1 13.0623 4.9934 5.4635 18 1 12.8096 3.4538 7.3201 19 1 13.6157 2.6495 5.1790 20 6 8.5029 3.8167 3.9172 21 6 7.2514 3.8893 3.3785 22 6 2.7530 1.6532 1.3029 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.3136 2.0789 -0.3238 27 1 3.3380 1.8459 -1.6855 28 1 3.9094 0.4217 -0.7127 29 1 3.6221 3.3708 0.2117 30 1 5.9377 2.1465 0.0544 31 1 5.3231 1.0748 1.3358 32 1 7.3964 1.2484 1.2516 33 1 9.6472 1.0997 2.1935 34 1 10.1250 3.8788 7.0117 35 1 8.8131 4.5318 4.6646 36 1 6.5708 4.6637 3.7003 37 1 3.1164 0.7801 1.8446 38 1 2.2137 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704241041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:24 Heat of formation + Delta-G solvation = -50.376989 kcal Electronic energy + Delta-G solvation = -18721.352296 eV Core-core repulsion = 15722.512974 eV Total energy + Delta-G solvation = -2998.839322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75437 -38.52218 -36.66581 -35.79102 -33.27250 -29.94206 -29.08587 -28.18742 -26.64348 -25.77261 -24.67045 -22.66674 -20.82877 -20.48720 -19.55918 -17.32874 -16.97844 -16.78037 -15.79381 -15.44152 -15.16351 -15.10832 -14.51896 -14.04581 -13.89039 -13.05960 -12.72287 -12.52382 -12.46991 -12.17709 -12.08704 -11.81538 -11.50253 -11.34949 -11.14533 -11.01532 -10.89992 -10.71259 -10.51931 -10.33499 -9.84540 -9.76526 -9.59864 -9.29949 -8.99216 -7.60705 -6.99284 -6.69420 -4.22495 2.80612 2.98699 3.10262 3.13680 3.24137 3.58295 3.97241 4.08377 4.47769 4.56616 4.64751 4.71294 4.84065 5.07211 5.16259 5.30427 5.41458 5.49954 5.63441 5.67617 5.71130 5.75307 5.85797 5.97077 6.10805 6.13418 6.26252 6.32994 6.76881 7.01632 7.06812 7.14942 7.22212 7.50744 7.59190 7.83700 8.03638 8.23815 8.49899 8.69269 8.92989 9.02433 10.24997 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.058555 B = 0.003126 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.068852 B = 8953.809421 C = 9050.767756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.059 3.941 4 C -0.127 4.127 5 C -0.106 4.106 6 C 0.081 3.919 7 O -0.328 6.328 8 C -0.006 4.006 9 C -0.168 4.168 10 C -0.198 4.198 11 C 0.087 3.913 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.800 5.800 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.146 4.146 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.279 0.721 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -2.379 -9.066 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.001 3.999 4 C -0.165 4.165 5 C -0.125 4.125 6 C 0.005 3.995 7 O -0.244 6.244 8 C -0.050 4.050 9 C -0.187 4.187 10 C -0.217 4.217 11 C 0.085 3.915 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.426 5.426 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.184 4.184 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.233 -2.340 -8.773 16.048 hybrid contribution 0.659 0.129 0.277 0.726 sum -12.573 -2.212 -8.496 15.335 Atomic orbital electron populations 1.22770 0.81470 1.02595 0.99827 1.87953 1.19425 1.27666 1.94612 1.23792 0.93744 0.84916 0.97419 1.23213 0.95214 1.00328 0.97710 1.22273 0.93795 0.99873 0.96514 1.22372 0.94046 0.92041 0.91072 1.85807 1.30993 1.52486 1.55115 1.18599 0.84280 1.00786 1.01294 1.20423 0.95932 0.99257 1.03041 1.20569 0.95458 1.01191 1.04521 1.17596 0.93329 0.89795 0.90790 1.19462 0.95678 1.33663 1.00625 0.90567 1.25874 0.98986 0.93171 0.96167 1.69840 1.33181 1.32556 1.07010 0.86328 0.82707 0.79805 0.77932 1.19350 1.20414 1.18730 1.20979 0.92866 0.99664 1.01834 1.19835 0.97213 0.98985 0.97970 1.23577 0.97109 1.00971 0.96727 0.94039 0.94192 0.89839 0.89548 0.90701 0.88873 0.88228 0.93074 0.92973 0.88808 0.88760 0.90967 0.85700 0.88546 0.89031 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.38 10.72 -35.23 -0.38 -4.76 16 3 C 0.06 0.63 4.31 -25.82 -0.11 0.51 16 4 C -0.13 -1.36 7.48 -25.91 -0.19 -1.56 16 5 C -0.11 -1.35 4.00 -89.81 -0.36 -1.71 16 6 C 0.08 1.32 4.56 37.16 0.17 1.48 16 7 O -0.33 -6.82 10.12 -18.71 -0.19 -7.01 16 8 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 9 C -0.17 -3.89 8.96 -39.83 -0.36 -4.25 16 10 C -0.20 -4.96 9.74 -39.25 -0.38 -5.34 16 11 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 12 C -0.46 -12.49 9.04 -37.84 -0.34 -12.83 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 15 N -0.80 -20.96 10.96 55.54 0.61 -20.35 16 16 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.13 -3.56 8.64 -39.25 -0.34 -3.90 16 21 C -0.12 -2.99 9.92 -39.83 -0.40 -3.38 16 22 C -0.15 -1.79 7.48 -25.83 -0.19 -1.99 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 31 H 0.05 0.86 7.37 -51.93 -0.38 0.47 16 32 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 33 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.13 3.38 6.16 -52.49 -0.32 3.05 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -29.08 317.63 -8.16 -37.24 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.60 Total: 4.67 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -2.35 Total: -28.45 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.61 Total: -20.35 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.57 Total: -11.76 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.08 -8.16 -37.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704241041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.141 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds