Wall clock time and date at job start Mon Mar 30 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99760 * 2 1 4 4 C 1.53784 * 113.61372 * 210.00351 * 3 2 1 5 5 C 1.53790 * 87.07996 * 219.93691 * 4 3 2 6 6 C 1.52995 * 113.61243 * 139.98114 * 5 4 3 7 7 O 1.42899 * 109.47207 * 176.52918 * 6 5 4 8 8 C 1.35669 * 117.00461 * 180.02562 * 7 6 5 9 9 C 1.39310 * 119.81763 * 359.72132 * 8 7 6 10 10 C 1.36438 * 120.18902 * 179.76594 * 9 8 7 11 11 C 1.40833 * 119.80865 * 0.51016 * 10 9 8 12 12 C 1.41213 * 120.18190 * 179.72228 * 11 10 9 13 13 H 1.07997 * 119.99948 * 24.56830 * 12 11 10 14 14 C 1.39887 * 120.00155 * 204.57457 * 12 11 10 15 15 N 1.30882 * 120.00275 * 17.93053 * 14 12 11 16 16 Si 1.86803 * 120.00153 * 197.93382 * 14 12 11 17 17 H 1.48497 * 109.47140 * 89.99380 * 16 14 12 18 18 H 1.48497 * 109.47145 * 210.00177 * 16 14 12 19 19 H 1.48509 * 109.46706 * 329.99900 * 16 14 12 20 20 C 1.40839 * 119.64300 * 359.74277 * 11 10 9 21 21 C 1.36445 * 119.80679 * 0.02562 * 20 11 10 22 22 C 1.53780 * 87.17095 * 25.39240 * 5 4 3 23 23 H 1.08999 * 109.46812 * 299.99380 * 1 2 3 24 24 H 1.08998 * 109.47625 * 59.99746 * 1 2 3 25 25 H 1.09006 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.09003 * 112.85150 * 341.19552 * 3 2 1 27 27 H 1.09003 * 113.61389 * 105.38947 * 4 3 2 28 28 H 1.08996 * 113.61652 * 334.48615 * 4 3 2 29 29 H 1.09000 * 113.61163 * 270.79512 * 5 4 3 30 30 H 1.09000 * 109.47250 * 56.52769 * 6 5 4 31 31 H 1.09000 * 109.47326 * 296.52682 * 6 5 4 32 32 H 1.08002 * 119.90538 * 0.02562 * 9 8 7 33 33 H 1.07994 * 120.09956 * 180.25702 * 10 9 8 34 34 H 0.97003 * 120.00041 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.09867 * 179.97438 * 20 11 10 36 36 H 1.08002 * 119.90121 * 179.97438 * 21 20 11 37 37 H 1.08990 * 113.61916 * 89.15880 * 22 5 4 38 38 H 1.09007 * 113.61011 * 220.06461 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.3755 1.3719 -0.7046 5 6 3.8220 2.3199 0.4210 6 6 5.2537 2.0713 0.8997 7 8 5.6032 3.0471 1.8835 8 6 6.8493 2.9679 2.4142 9 6 7.7174 1.9617 1.9964 10 6 8.9739 1.8778 2.5215 11 6 9.3886 2.8057 3.4964 12 6 10.6852 2.7227 4.0495 13 1 11.4800 2.2476 3.4936 14 6 10.9403 3.2557 5.3174 15 7 9.9481 3.5089 6.1326 16 14 12.6970 3.6061 5.8472 17 1 13.0623 4.9934 5.4635 18 1 12.8096 3.4538 7.3201 19 1 13.6157 2.6495 5.1790 20 6 8.5029 3.8167 3.9172 21 6 7.2514 3.8893 3.3785 22 6 2.7530 1.6532 1.3029 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.3136 2.0789 -0.3238 27 1 3.3380 1.8459 -1.6855 28 1 3.9094 0.4217 -0.7127 29 1 3.6221 3.3708 0.2117 30 1 5.9377 2.1465 0.0544 31 1 5.3231 1.0748 1.3358 32 1 7.3964 1.2484 1.2516 33 1 9.6472 1.0997 2.1935 34 1 10.1250 3.8788 7.0117 35 1 8.8131 4.5318 4.6646 36 1 6.5708 4.6637 3.7003 37 1 3.1164 0.7801 1.8446 38 1 2.2137 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704241041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:24 Heat of formation + Delta-G solvation = -66.027320 kcal Electronic energy + Delta-G solvation = -18722.030945 eV Core-core repulsion = 15722.512974 eV Total energy + Delta-G solvation = -2999.517971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89719 -40.03739 -38.18970 -36.94342 -35.17119 -31.79800 -30.97215 -29.46577 -27.44494 -26.75908 -26.44728 -23.92981 -22.62305 -22.21131 -20.56789 -19.23619 -18.62519 -17.75691 -17.03868 -16.77676 -16.52866 -16.16407 -15.84487 -15.73486 -15.15811 -14.81812 -14.15252 -14.02460 -13.86630 -13.48596 -13.41532 -13.26578 -12.83936 -12.79752 -12.64804 -12.45879 -12.21794 -11.90388 -11.86245 -11.63426 -11.56587 -11.26800 -11.10402 -10.86335 -10.40386 -9.56472 -8.92465 -8.59516 -6.22962 0.94823 1.02255 1.39992 1.53152 1.53321 2.23184 2.52777 2.72566 2.96678 3.54656 3.62901 3.69931 3.83603 3.91948 4.21335 4.26997 4.32634 4.41294 4.49431 4.54349 4.58799 4.69842 4.80827 4.82538 4.87549 4.88536 5.02382 5.07371 5.16240 5.22008 5.28376 5.36534 5.59188 5.65307 5.89247 6.05447 6.26484 6.33165 6.56897 6.81071 6.94925 7.10287 8.37175 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.058555 B = 0.003126 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.068852 B = 8953.809421 C = 9050.767756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.067 3.933 4 C -0.120 4.120 5 C -0.105 4.105 6 C 0.073 3.927 7 O -0.335 6.335 8 C 0.000 4.000 9 C -0.167 4.167 10 C -0.209 4.209 11 C 0.055 3.945 12 C -0.500 4.500 13 H 0.076 0.924 14 C 0.033 3.967 15 N -0.832 5.832 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.259 1.259 20 C -0.153 4.153 21 C -0.133 4.133 22 C -0.154 4.154 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.288 0.712 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 -2.508 -10.222 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.009 3.991 4 C -0.157 4.157 5 C -0.123 4.123 6 C -0.003 4.003 7 O -0.251 6.251 8 C -0.044 4.044 9 C -0.185 4.185 10 C -0.229 4.229 11 C 0.053 3.947 12 C -0.530 4.530 13 H 0.094 0.906 14 C -0.181 4.181 15 N -0.458 5.458 16 Si 0.805 3.195 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.172 4.172 21 C -0.152 4.152 22 C -0.192 4.192 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.032 -2.481 -9.946 17.377 hybrid contribution 0.724 0.112 0.569 0.927 sum -13.308 -2.370 -9.377 16.451 Atomic orbital electron populations 1.22975 0.79772 1.03712 1.00853 1.87918 1.21407 1.28185 1.94641 1.23777 0.94114 0.85357 0.95819 1.23183 0.94977 0.99505 0.98038 1.22298 0.91403 1.00933 0.97673 1.22721 0.96499 0.90925 0.90133 1.85811 1.29296 1.53975 1.56034 1.18694 0.85341 0.99935 1.00411 1.20703 0.95093 0.99575 1.03174 1.20803 0.96530 1.01178 1.04367 1.17955 0.94057 0.90707 0.92019 1.19715 0.95882 1.35573 1.01781 0.90613 1.26753 1.03502 0.92228 0.95616 1.69893 1.35467 1.32880 1.07603 0.85182 0.76869 0.79686 0.77805 1.18700 1.19351 1.18244 1.20920 0.93903 0.99929 1.02488 1.20020 0.96929 0.99851 0.98376 1.23603 0.97555 1.00380 0.97629 0.93569 0.92558 0.88836 0.87183 0.88478 0.89517 0.87378 0.92251 0.93278 0.85767 0.87724 0.90187 0.87090 0.87183 0.90773 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -8.51 10.72 -148.98 -1.60 -10.11 16 3 C 0.07 1.25 4.31 31.18 0.13 1.39 16 4 C -0.12 -2.25 7.48 31.12 0.23 -2.02 16 5 C -0.10 -2.46 4.00 -10.27 -0.04 -2.50 16 6 C 0.07 2.25 4.56 71.98 0.33 2.58 16 7 O -0.34 -13.57 10.12 -89.86 -0.91 -14.48 16 8 C 0.00 0.00 6.71 22.79 0.15 0.16 16 9 C -0.17 -7.63 8.96 22.11 0.20 -7.43 16 10 C -0.21 -10.58 9.74 22.48 0.22 -10.36 16 11 C 0.05 3.05 5.57 -21.28 -0.12 2.93 16 12 C -0.50 -27.53 9.04 23.40 0.21 -27.32 16 13 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.03 1.69 5.13 85.23 0.44 2.13 16 15 N -0.83 -44.49 10.96 21.82 0.24 -44.25 16 16 Si 0.98 38.87 29.60 68.60 2.03 40.90 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 C -0.15 -8.36 8.64 22.49 0.19 -8.17 16 21 C -0.13 -6.64 9.92 22.11 0.22 -6.42 16 22 C -0.15 -3.56 7.48 31.18 0.23 -3.33 16 23 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.11 1.54 7.87 -2.39 -0.02 1.52 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 1.75 7.66 -2.39 -0.02 1.73 16 31 H 0.05 1.55 7.37 -2.39 -0.02 1.54 16 32 H 0.12 4.82 6.27 -2.91 -0.02 4.80 16 33 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 34 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 35 H 0.11 6.26 6.16 -2.91 -0.02 6.24 16 36 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 37 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -63.01 317.63 4.43 -58.58 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 1.04 Total: 26.18 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 3.63 Total: -56.83 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.24 Total: -44.25 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -2.51 Total: -24.58 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -63.01 4.43 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704241041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -63.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds