Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.56395 * 2 1 4 4 C 1.54799 * 110.61112 * 122.79788 * 2 1 3 5 5 O 1.44428 * 104.80167 * 94.52659 * 4 2 1 6 6 C 1.44429 * 105.27472 * 40.58636 * 5 4 2 7 7 C 1.54485 * 104.80163 * 319.49096 * 6 5 4 8 8 H 1.09001 * 110.50789 * 265.19287 * 7 6 5 9 9 O 1.42900 * 110.50874 * 142.62388 * 7 6 5 10 10 C 1.42895 * 114.00407 * 93.30292 * 9 7 6 11 11 C 1.50698 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.38641 * 119.75030 * 269.72170 * 11 10 9 13 13 C 1.37614 * 120.24978 * 179.76119 * 12 11 10 14 14 C 1.40718 * 119.74076 * 0.49620 * 13 12 11 15 15 C 1.41401 * 120.24265 * 179.78742 * 14 13 12 16 16 H 1.07992 * 120.00062 * 150.20138 * 15 14 13 17 17 C 1.39953 * 119.99645 * 330.20600 * 15 14 13 18 18 N 1.30819 * 119.99561 * 161.73655 * 17 15 14 19 19 Si 1.86797 * 120.00001 * 341.73065 * 17 15 14 20 20 H 1.48500 * 109.46759 * 95.41654 * 19 17 15 21 21 H 1.48499 * 109.46977 * 215.41363 * 19 17 15 22 22 H 1.48500 * 109.47381 * 335.41386 * 19 17 15 23 23 C 1.40715 * 119.51582 * 359.75946 * 14 13 12 24 24 C 1.37619 * 119.74233 * 0.02562 * 23 14 13 25 25 H 1.08992 * 109.47523 * 182.67869 * 1 2 3 26 26 H 1.09000 * 109.47563 * 302.68491 * 1 2 3 27 27 H 1.09004 * 109.47047 * 62.68007 * 1 2 3 28 28 H 1.09000 * 110.30978 * 335.73172 * 4 2 1 29 29 H 1.08996 * 110.43525 * 213.38872 * 4 2 1 30 30 H 1.08994 * 110.37591 * 200.65701 * 6 5 4 31 31 H 1.09003 * 110.46131 * 78.36456 * 6 5 4 32 32 H 1.09005 * 109.47382 * 299.99778 * 10 9 7 33 33 H 1.09002 * 109.47028 * 59.99740 * 10 9 7 34 34 H 1.07999 * 119.87243 * 0.02562 * 12 11 10 35 35 H 1.08001 * 120.12920 * 180.23608 * 13 12 11 36 36 H 0.97002 * 120.00033 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.13077 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87182 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0749 -0.7848 1.2179 5 8 2.3079 -2.1210 0.7216 6 6 2.8750 -1.9444 -0.5949 7 6 2.0714 -0.7814 -1.2180 8 1 1.2490 -1.1656 -1.8215 9 8 2.9243 0.0501 -2.0075 10 6 2.9604 -0.3025 -3.3918 11 6 3.8849 0.6350 -4.1249 12 6 3.3833 1.8031 -4.6780 13 6 4.2192 2.6689 -5.3454 14 6 5.5858 2.3595 -5.4744 15 6 6.4534 3.2393 -6.1619 16 1 7.4950 3.2982 -5.8828 17 6 5.9622 4.0340 -7.2040 18 7 6.6361 5.0829 -7.6001 19 14 4.3444 3.5967 -8.0291 20 1 3.2441 4.3737 -7.4040 21 1 4.4221 3.9243 -9.4755 22 1 4.0810 2.1446 -7.8640 23 6 6.0829 1.1685 -4.9137 24 6 5.2294 0.3197 -4.2467 25 1 -0.3634 -1.0264 0.0480 26 1 -0.3634 0.5549 0.8649 27 1 -0.3633 0.4717 -0.9131 28 1 1.3358 -0.8012 2.0189 29 1 3.0071 -0.3427 1.5695 30 1 2.7506 -2.8513 -1.1865 31 1 3.9302 -1.6807 -0.5231 32 1 3.3216 -1.3255 -3.4969 33 1 1.9577 -0.2262 -3.8125 34 1 2.3333 2.0366 -4.5809 35 1 3.8270 3.5802 -5.7721 36 1 6.2958 5.6335 -8.3226 37 1 7.1300 0.9210 -5.0071 38 1 5.6086 -0.5952 -3.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705854418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = -83.479403 kcal Electronic energy + Delta-G solvation = -19183.161115 eV Core-core repulsion = 16182.886364 eV Total energy + Delta-G solvation = -3000.274750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86005 -38.09781 -36.67838 -33.79837 -33.16240 -31.15377 -29.74762 -28.90605 -27.01366 -26.32827 -23.50540 -22.46536 -21.54506 -20.61386 -20.05617 -17.47001 -17.12580 -16.45932 -15.71590 -15.62429 -15.09272 -14.66100 -14.52157 -13.87443 -13.76429 -13.32858 -13.25532 -12.72985 -12.54720 -12.42098 -12.31084 -12.16649 -11.78866 -11.38690 -11.25087 -10.97831 -10.82423 -10.78440 -10.52080 -10.27232 -9.95008 -9.84205 -9.61412 -9.24770 -9.16721 -7.75273 -7.61091 -7.00502 -4.53902 2.43268 2.67685 3.07032 3.17858 3.28035 3.71301 3.94610 4.05413 4.41476 4.54073 4.66340 4.80190 5.04273 5.14333 5.32601 5.39995 5.48577 5.52344 5.57309 5.59675 5.64363 5.74025 5.76464 5.89027 5.94107 6.03569 6.08681 6.11169 6.53409 6.60947 6.80474 6.85749 7.13343 7.38522 7.45153 7.58250 7.75848 7.83960 8.08567 8.30767 8.61373 8.75215 10.01637 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038331 B = 0.004023 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.308127 B = 6958.629606 C = 7242.965749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 H 0.098 0.902 4 C 0.050 3.950 5 O -0.375 6.375 6 C 0.023 3.977 7 C 0.057 3.943 8 H 0.072 0.928 9 O -0.368 6.368 10 C 0.126 3.874 11 C -0.227 4.227 12 C -0.054 4.054 13 C -0.242 4.242 14 C 0.098 3.902 15 C -0.445 4.445 16 H 0.091 0.909 17 C 0.084 3.916 18 N -0.805 5.805 19 Si 0.913 3.087 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.244 1.244 23 C -0.213 4.213 24 C -0.060 4.060 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.286 0.714 37 H 0.101 0.899 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -9.246 9.962 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 H 0.116 0.884 4 C -0.027 4.027 5 O -0.294 6.294 6 C -0.054 4.054 7 C -0.002 4.002 8 H 0.090 0.910 9 O -0.288 6.288 10 C 0.051 3.949 11 C -0.228 4.228 12 C -0.072 4.072 13 C -0.261 4.261 14 C 0.095 3.905 15 C -0.473 4.473 16 H 0.109 0.891 17 C -0.135 4.135 18 N -0.429 5.429 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.167 1.167 23 C -0.233 4.233 24 C -0.078 4.078 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.165 -9.060 9.976 16.881 hybrid contribution -0.665 0.063 -0.690 0.961 sum -10.830 -8.997 9.286 16.867 Atomic orbital electron populations 1.21789 0.93689 1.02058 1.02227 1.22627 0.96623 1.01425 0.94019 0.88374 1.23532 1.00229 0.82767 0.96167 1.89097 1.83300 1.26073 1.30903 1.23985 0.98362 0.99023 0.84063 1.23483 0.92845 0.90947 0.92943 0.91000 1.88155 1.65644 1.54980 1.19990 1.21182 0.97407 0.96433 0.79890 1.18747 0.94203 0.99693 1.10184 1.20448 0.97427 0.93178 0.96142 1.21009 0.95065 1.00922 1.09074 1.17771 0.91644 0.90717 0.90353 1.19558 0.98280 1.15894 1.13610 0.89067 1.26192 0.98707 0.92151 0.96490 1.69697 1.39006 1.10584 1.23628 0.86282 0.80944 0.82019 0.76788 1.19612 1.21808 1.16717 1.20995 0.98568 0.95896 1.07807 1.20484 0.92714 0.97796 0.96829 0.92299 0.92135 0.92171 0.89029 0.91921 0.89088 0.91019 0.94023 0.94026 0.88933 0.88157 0.90363 0.88068 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.96 37.16 0.33 -0.97 16 2 C -0.13 -1.45 3.54 -88.89 -0.31 -1.77 16 3 H 0.10 1.20 8.00 -51.93 -0.42 0.79 16 4 C 0.05 0.53 7.20 38.11 0.27 0.81 16 5 O -0.37 -4.80 11.65 -35.23 -0.41 -5.21 16 6 C 0.02 0.28 7.38 37.94 0.28 0.56 16 7 C 0.06 0.73 3.23 -25.16 -0.08 0.65 16 8 H 0.07 0.85 7.43 -51.93 -0.39 0.47 16 9 O -0.37 -6.11 9.96 -35.23 -0.35 -6.46 16 10 C 0.13 2.10 5.90 36.00 0.21 2.31 16 11 C -0.23 -4.69 5.53 -104.33 -0.58 -5.26 16 12 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 13 C -0.24 -5.86 7.18 -38.87 -0.28 -6.14 16 14 C 0.10 2.50 5.10 -106.82 -0.55 1.96 16 15 C -0.45 -12.04 9.57 -37.74 -0.36 -12.40 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.08 2.19 5.40 -17.34 -0.09 2.10 16 18 N -0.81 -21.35 13.93 55.55 0.77 -20.57 16 19 Si 0.91 20.69 24.52 -169.99 -4.17 16.52 16 20 H -0.27 -5.94 6.71 56.52 0.38 -5.57 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 23 C -0.21 -4.98 9.80 -38.87 -0.38 -5.36 16 24 C -0.06 -1.26 9.67 -39.66 -0.38 -1.65 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.10 2.42 4.73 -52.49 -0.25 2.17 16 36 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -28.08 312.34 -7.44 -35.52 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.69 Total: 2.21 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.30 Total: -26.71 kcal Atomic # 7 Polarization: -21.35 SS G_CDS: 0.77 Total: -20.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.76 Total: -11.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.17 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.08 -7.44 -35.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705854418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.961 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds