Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.56395 * 2 1 4 4 C 1.54799 * 110.61112 * 122.79788 * 2 1 3 5 5 O 1.44428 * 104.80167 * 94.52659 * 4 2 1 6 6 C 1.44429 * 105.27472 * 40.58636 * 5 4 2 7 7 C 1.54485 * 104.80163 * 319.49096 * 6 5 4 8 8 H 1.09001 * 110.50789 * 265.19287 * 7 6 5 9 9 O 1.42900 * 110.50874 * 142.62388 * 7 6 5 10 10 C 1.42895 * 114.00407 * 93.30292 * 9 7 6 11 11 C 1.50698 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.38641 * 119.75030 * 269.72170 * 11 10 9 13 13 C 1.37614 * 120.24978 * 179.76119 * 12 11 10 14 14 C 1.40718 * 119.74076 * 0.49620 * 13 12 11 15 15 C 1.41401 * 120.24265 * 179.78742 * 14 13 12 16 16 H 1.07992 * 120.00062 * 150.20138 * 15 14 13 17 17 C 1.39953 * 119.99645 * 330.20600 * 15 14 13 18 18 N 1.30819 * 119.99561 * 161.73655 * 17 15 14 19 19 Si 1.86797 * 120.00001 * 341.73065 * 17 15 14 20 20 H 1.48500 * 109.46759 * 95.41654 * 19 17 15 21 21 H 1.48499 * 109.46977 * 215.41363 * 19 17 15 22 22 H 1.48500 * 109.47381 * 335.41386 * 19 17 15 23 23 C 1.40715 * 119.51582 * 359.75946 * 14 13 12 24 24 C 1.37619 * 119.74233 * 0.02562 * 23 14 13 25 25 H 1.08992 * 109.47523 * 182.67869 * 1 2 3 26 26 H 1.09000 * 109.47563 * 302.68491 * 1 2 3 27 27 H 1.09004 * 109.47047 * 62.68007 * 1 2 3 28 28 H 1.09000 * 110.30978 * 335.73172 * 4 2 1 29 29 H 1.08996 * 110.43525 * 213.38872 * 4 2 1 30 30 H 1.08994 * 110.37591 * 200.65701 * 6 5 4 31 31 H 1.09003 * 110.46131 * 78.36456 * 6 5 4 32 32 H 1.09005 * 109.47382 * 299.99778 * 10 9 7 33 33 H 1.09002 * 109.47028 * 59.99740 * 10 9 7 34 34 H 1.07999 * 119.87243 * 0.02562 * 12 11 10 35 35 H 1.08001 * 120.12920 * 180.23608 * 13 12 11 36 36 H 0.97002 * 120.00033 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.13077 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87182 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0749 -0.7848 1.2179 5 8 2.3079 -2.1210 0.7216 6 6 2.8750 -1.9444 -0.5949 7 6 2.0714 -0.7814 -1.2180 8 1 1.2490 -1.1656 -1.8215 9 8 2.9243 0.0501 -2.0075 10 6 2.9604 -0.3025 -3.3918 11 6 3.8849 0.6350 -4.1249 12 6 3.3833 1.8031 -4.6780 13 6 4.2192 2.6689 -5.3454 14 6 5.5858 2.3595 -5.4744 15 6 6.4534 3.2393 -6.1619 16 1 7.4950 3.2982 -5.8828 17 6 5.9622 4.0340 -7.2040 18 7 6.6361 5.0829 -7.6001 19 14 4.3444 3.5967 -8.0291 20 1 3.2441 4.3737 -7.4040 21 1 4.4221 3.9243 -9.4755 22 1 4.0810 2.1446 -7.8640 23 6 6.0829 1.1685 -4.9137 24 6 5.2294 0.3197 -4.2467 25 1 -0.3634 -1.0264 0.0480 26 1 -0.3634 0.5549 0.8649 27 1 -0.3633 0.4717 -0.9131 28 1 1.3358 -0.8012 2.0189 29 1 3.0071 -0.3427 1.5695 30 1 2.7506 -2.8513 -1.1865 31 1 3.9302 -1.6807 -0.5231 32 1 3.3216 -1.3255 -3.4969 33 1 1.9577 -0.2262 -3.8125 34 1 2.3333 2.0366 -4.5809 35 1 3.8270 3.5802 -5.7721 36 1 6.2958 5.6335 -8.3226 37 1 7.1300 0.9210 -5.0071 38 1 5.6086 -0.5952 -3.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705854418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = -100.263374 kcal Electronic energy + Delta-G solvation = -19183.888922 eV Core-core repulsion = 16182.886364 eV Total energy + Delta-G solvation = -3001.002558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83927 -39.76179 -37.96185 -35.61791 -34.12118 -32.83863 -31.53373 -29.97955 -28.51756 -27.19607 -25.13938 -23.52185 -23.24562 -21.95984 -21.37294 -19.38749 -18.19338 -17.67436 -17.26308 -16.66280 -16.22972 -16.05900 -15.91674 -15.62302 -15.07995 -14.75389 -14.38507 -14.22158 -14.09858 -13.73526 -13.56124 -13.26877 -13.00750 -12.89333 -12.70652 -12.42043 -12.19188 -12.03100 -11.80277 -11.66037 -11.53809 -11.46187 -11.02237 -10.87361 -10.34724 -9.54136 -9.44539 -8.93174 -6.53780 0.67025 0.86325 1.25001 1.38516 1.47886 2.11047 2.41505 2.80963 3.14606 3.50477 3.57609 3.78939 3.92059 4.11965 4.17310 4.20330 4.29164 4.41482 4.50898 4.53417 4.55769 4.71736 4.73573 4.76341 4.79408 4.82765 4.95847 5.02126 5.05912 5.12115 5.29487 5.29601 5.58562 5.70228 5.71930 5.88325 6.01483 6.22481 6.36915 6.38370 6.71210 6.80524 8.15366 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038331 B = 0.004023 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.308127 B = 6958.629606 C = 7242.965749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 H 0.085 0.915 4 C 0.047 3.953 5 O -0.387 6.387 6 C 0.023 3.977 7 C 0.052 3.948 8 H 0.088 0.912 9 O -0.390 6.390 10 C 0.127 3.873 11 C -0.210 4.210 12 C -0.062 4.062 13 C -0.254 4.254 14 C 0.077 3.923 15 C -0.487 4.487 16 H 0.056 0.944 17 C 0.048 3.952 18 N -0.848 5.848 19 Si 0.967 3.033 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.252 1.252 23 C -0.227 4.227 24 C -0.061 4.061 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.295 0.705 37 H 0.103 0.897 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -11.318 11.129 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 H 0.104 0.896 4 C -0.029 4.029 5 O -0.306 6.306 6 C -0.054 4.054 7 C -0.006 4.006 8 H 0.106 0.894 9 O -0.310 6.310 10 C 0.052 3.948 11 C -0.211 4.211 12 C -0.080 4.080 13 C -0.273 4.273 14 C 0.074 3.926 15 C -0.517 4.517 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.474 5.474 19 Si 0.791 3.209 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.176 1.176 23 C -0.246 4.246 24 C -0.079 4.079 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.161 -11.133 11.158 20.535 hybrid contribution 0.215 0.523 -0.811 0.988 sum -12.947 -10.611 10.347 19.679 Atomic orbital electron populations 1.21768 0.91991 1.02662 1.02890 1.22659 0.97995 1.00533 0.93562 0.89636 1.23671 1.00834 0.81865 0.96524 1.89090 1.83298 1.27136 1.31115 1.23998 0.97633 0.99579 0.84214 1.23709 0.92788 0.90943 0.93148 0.89427 1.88087 1.66869 1.56190 1.19835 1.21168 0.97494 0.96174 0.79968 1.19330 0.94624 0.99203 1.07947 1.20825 0.98719 0.93122 0.95344 1.21126 0.94835 1.01565 1.09738 1.17923 0.92370 0.91314 0.90956 1.19530 0.97204 1.18801 1.16116 0.92600 1.26856 1.01633 0.91772 0.96425 1.69723 1.40916 1.11767 1.25019 0.85458 0.77678 0.81131 0.76675 1.18329 1.20225 1.17584 1.21212 0.99358 0.95927 1.08148 1.20860 0.92847 0.98387 0.95849 0.91758 0.90657 0.92337 0.86844 0.92159 0.87410 0.92145 0.91763 0.91981 0.86001 0.88487 0.89493 0.87929 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.96 71.98 0.64 -1.42 16 2 C -0.13 -2.54 3.54 -9.67 -0.03 -2.58 16 3 H 0.09 1.91 8.00 -2.39 -0.02 1.89 16 4 C 0.05 0.89 7.20 72.60 0.52 1.41 16 5 O -0.39 -8.84 11.65 -148.98 -1.74 -10.57 16 6 C 0.02 0.49 7.38 72.49 0.53 1.03 16 7 C 0.05 1.17 3.23 31.61 0.10 1.27 16 8 H 0.09 1.70 7.43 -2.39 -0.02 1.68 16 9 O -0.39 -11.56 9.96 -148.98 -1.48 -13.04 16 10 C 0.13 3.67 5.90 71.24 0.42 4.09 16 11 C -0.21 -7.97 5.53 -19.67 -0.11 -8.08 16 12 C -0.06 -2.55 9.67 22.22 0.21 -2.33 16 13 C -0.25 -12.12 7.18 22.73 0.16 -11.96 16 14 C 0.08 3.99 5.10 -21.29 -0.11 3.88 16 15 C -0.49 -27.82 9.57 23.46 0.22 -27.60 16 16 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 17 C 0.05 2.59 5.40 85.26 0.46 3.06 16 18 N -0.85 -46.93 13.93 21.83 0.30 -46.62 16 19 Si 0.97 42.93 24.52 68.60 1.68 44.61 16 20 H -0.26 -10.82 6.71 99.48 0.67 -10.15 16 21 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.25 -11.38 6.86 99.48 0.68 -10.69 16 23 C -0.23 -10.62 9.80 22.73 0.22 -10.40 16 24 C -0.06 -2.45 9.67 22.22 0.21 -2.23 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.11 1.60 7.88 -2.39 -0.02 1.58 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.06 1.59 8.08 -2.38 -0.02 1.57 16 33 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 34 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.10 4.63 4.73 -2.91 -0.01 4.62 16 36 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 37 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -62.00 312.34 3.21 -58.79 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.97 Total: 18.69 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 3.47 Total: -51.86 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.30 Total: -46.62 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -3.22 Total: -23.61 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.68 Total: 44.61 kcal Total: -62.00 3.21 -58.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705854418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.478 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds