Wall clock time and date at job start Mon Mar 30 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.57127 * 2 1 4 4 C 1.54477 * 110.51071 * 122.68558 * 2 1 3 5 5 O 1.44425 * 104.81009 * 142.62160 * 4 2 1 6 6 C 1.44431 * 105.26831 * 319.48559 * 5 4 2 7 7 C 1.54475 * 104.80683 * 40.51395 * 6 5 4 8 8 H 1.08997 * 110.51666 * 94.79973 * 7 6 5 9 9 O 1.42898 * 110.51164 * 217.37483 * 7 6 5 10 10 C 1.42887 * 113.99966 * 268.54368 * 9 7 6 11 11 C 1.50704 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.38630 * 119.74862 * 269.72685 * 11 10 9 13 13 C 1.37621 * 120.24799 * 179.71703 * 12 11 10 14 14 C 1.40714 * 119.74200 * 0.57379 * 13 12 11 15 15 C 1.41404 * 120.24466 * 179.67973 * 14 13 12 16 16 H 1.08000 * 120.00128 * 155.31079 * 15 14 13 17 17 C 1.39945 * 119.99627 * 335.31488 * 15 14 13 18 18 N 1.30824 * 120.00314 * 342.22467 * 17 15 14 19 19 Si 1.86799 * 119.99805 * 162.23429 * 17 15 14 20 20 H 1.48499 * 109.47287 * 94.66102 * 19 17 15 21 21 H 1.48497 * 109.47010 * 214.66036 * 19 17 15 22 22 H 1.48506 * 109.47078 * 334.66147 * 19 17 15 23 23 C 1.40715 * 119.51442 * 359.70220 * 14 13 12 24 24 C 1.37615 * 119.74380 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.46536 * 298.77802 * 1 2 3 26 26 H 1.09007 * 109.46346 * 58.76940 * 1 2 3 27 27 H 1.08993 * 109.47198 * 178.76998 * 1 2 3 28 28 H 1.09003 * 110.37514 * 23.78375 * 4 2 1 29 29 H 1.09006 * 110.36932 * 261.44937 * 4 2 1 30 30 H 1.08998 * 110.36717 * 159.34505 * 6 5 4 31 31 H 1.08998 * 110.37405 * 281.56679 * 6 5 4 32 32 H 1.09001 * 109.47288 * 300.00021 * 10 9 7 33 33 H 1.09005 * 109.47367 * 59.99793 * 10 9 7 34 34 H 1.08006 * 119.88069 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.13234 * 180.28258 * 13 12 11 36 36 H 0.97001 * 119.99905 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.12857 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.88034 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0713 -0.7813 1.2177 5 8 3.2398 -1.4715 0.7238 6 6 2.8756 -1.9423 -0.5922 7 6 2.0714 -0.7814 -1.2182 8 1 2.7214 -0.1486 -1.8223 9 8 0.9933 -1.2877 -2.0076 10 6 1.3242 -1.4879 -3.3832 11 6 0.1208 -2.0213 -4.1170 12 6 -0.0775 -3.3902 -4.2093 13 6 -1.1760 -3.8884 -4.8720 14 6 -2.0931 -3.0027 -5.4674 15 6 -3.2218 -3.5032 -6.1566 16 1 -4.1049 -2.8908 -6.2630 17 6 -3.1944 -4.7922 -6.7008 18 7 -2.0508 -5.3998 -6.8865 19 14 -4.7909 -5.6453 -7.1623 20 1 -5.0747 -5.4191 -8.6022 21 1 -4.6656 -7.1025 -6.9055 22 1 -5.9014 -5.0924 -6.3460 23 6 -1.8786 -1.6153 -5.3722 24 6 -0.7762 -1.1394 -4.6998 25 1 -0.3632 0.4947 0.9008 26 1 -0.3632 0.5329 -0.8788 27 1 -0.3633 -1.0274 -0.0221 28 1 1.3285 -1.4971 1.5701 29 1 2.3465 -0.0940 2.0177 30 1 3.7687 -2.1469 -1.1825 31 1 2.2578 -2.8372 -0.5175 32 1 1.6289 -0.5393 -3.8254 33 1 2.1427 -2.2038 -3.4596 34 1 0.6305 -4.0683 -3.7560 35 1 -1.3311 -4.9552 -4.9389 36 1 -2.0319 -6.2934 -7.2634 37 1 -2.5759 -0.9266 -5.8259 38 1 -0.6091 -0.0750 -4.6258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705854422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:05 Heat of formation + Delta-G solvation = -83.471404 kcal Electronic energy + Delta-G solvation = -19261.662703 eV Core-core repulsion = 16261.388299 eV Total energy + Delta-G solvation = -3000.274403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79306 -37.82400 -36.52815 -33.85454 -32.98948 -30.57504 -29.32051 -28.76801 -26.71960 -26.15444 -23.64342 -22.68312 -21.02450 -20.17985 -20.01857 -17.33678 -16.92912 -16.33657 -15.65141 -15.30582 -15.02384 -14.81189 -14.21080 -13.92466 -13.49761 -13.37490 -12.88497 -12.52398 -12.28536 -12.16714 -11.97345 -11.86821 -11.45477 -11.20629 -11.03436 -10.98042 -10.89373 -10.59381 -10.46302 -10.36796 -9.90546 -9.62305 -9.44471 -9.20143 -9.10952 -7.49641 -7.38327 -6.81489 -4.40346 2.64938 3.04192 3.05922 3.06650 3.13065 3.81944 3.89758 4.20889 4.51513 4.65491 4.72245 4.87972 5.16874 5.28094 5.50108 5.54799 5.63121 5.66858 5.71453 5.74805 5.77910 5.87308 5.99503 6.13120 6.15317 6.33551 6.36958 6.47810 6.68764 6.91681 7.03035 7.24541 7.32790 7.57554 7.60421 7.83251 8.01471 8.08187 8.25540 8.59796 8.84818 8.93120 10.13059 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.003833 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.566882 B = 7302.819950 C = 7430.651931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.124 4.124 3 H 0.084 0.916 4 C 0.049 3.951 5 O -0.377 6.377 6 C 0.022 3.978 7 C 0.055 3.945 8 H 0.070 0.930 9 O -0.362 6.362 10 C 0.126 3.874 11 C -0.224 4.224 12 C -0.080 4.080 13 C -0.169 4.169 14 C 0.116 3.884 15 C -0.461 4.461 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.790 5.790 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.230 4.230 24 C -0.069 4.069 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.281 0.719 37 H 0.092 0.908 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 5.880 9.352 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 H 0.102 0.898 4 C -0.028 4.028 5 O -0.296 6.296 6 C -0.055 4.055 7 C -0.004 4.004 8 H 0.088 0.912 9 O -0.281 6.281 10 C 0.050 3.950 11 C -0.225 4.225 12 C -0.098 4.098 13 C -0.189 4.189 14 C 0.114 3.886 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.415 5.415 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.250 4.250 24 C -0.087 4.087 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.038 5.584 9.422 12.507 hybrid contribution -0.518 -0.386 -0.589 0.874 sum 5.520 5.198 8.833 11.641 Atomic orbital electron populations 1.21477 0.92727 1.03174 1.01228 1.22598 0.98336 0.99345 0.93951 0.89757 1.23531 0.87943 0.95081 0.96256 1.89093 1.35282 1.74050 1.31142 1.24005 0.99813 0.97694 0.83955 1.23365 0.89610 0.94298 0.93095 0.91244 1.88178 1.34508 1.84759 1.20678 1.21187 0.96008 0.97620 0.80141 1.18713 1.00381 0.93534 1.09864 1.20517 0.97280 0.93475 0.98547 1.21289 0.96360 0.99912 1.01306 1.17654 0.91748 0.90799 0.88409 1.19637 1.00434 0.98662 1.30276 0.90340 1.25933 0.97533 0.97181 0.93535 1.69827 1.26507 1.13612 1.31573 0.86312 0.82351 0.78735 0.79433 1.19534 1.19975 1.18358 1.20950 0.99867 0.95435 1.08722 1.20354 0.94514 0.96508 0.97332 0.93294 0.91749 0.91528 0.91855 0.89232 0.89137 0.91035 0.94300 0.94307 0.89526 0.86434 0.90795 0.88935 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.19 37.16 0.30 -1.30 16 2 C -0.12 -1.46 3.72 -89.05 -0.33 -1.79 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.55 7.18 37.93 0.27 0.82 16 5 O -0.38 -5.11 11.65 -35.23 -0.41 -5.52 16 6 C 0.02 0.30 7.37 37.93 0.28 0.58 16 7 C 0.06 0.75 3.55 -25.16 -0.09 0.66 16 8 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 9 O -0.36 -6.17 8.28 -35.23 -0.29 -6.46 16 10 C 0.13 2.24 5.92 36.01 0.21 2.45 16 11 C -0.22 -4.92 5.53 -104.33 -0.58 -5.49 16 12 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 13 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 14 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 15 C -0.46 -12.18 9.05 -37.74 -0.34 -12.52 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 18 N -0.79 -20.23 10.97 55.55 0.61 -19.62 16 19 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 24 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 27 H 0.07 0.95 7.75 -51.93 -0.40 0.54 16 28 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 33 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.12 3.15 6.18 -52.49 -0.32 2.82 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -27.68 315.73 -8.53 -36.22 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.73 Total: 4.48 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.44 Total: -27.25 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.70 Total: -11.98 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.68 -8.53 -36.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705854422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.255 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds