Wall clock time and date at job start Mon Mar 30 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.57127 * 2 1 4 4 C 1.54477 * 110.51071 * 122.68558 * 2 1 3 5 5 O 1.44425 * 104.81009 * 142.62160 * 4 2 1 6 6 C 1.44431 * 105.26831 * 319.48559 * 5 4 2 7 7 C 1.54475 * 104.80683 * 40.51395 * 6 5 4 8 8 H 1.08997 * 110.51666 * 94.79973 * 7 6 5 9 9 O 1.42898 * 110.51164 * 217.37483 * 7 6 5 10 10 C 1.42887 * 113.99966 * 268.54368 * 9 7 6 11 11 C 1.50704 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.38630 * 119.74862 * 269.72685 * 11 10 9 13 13 C 1.37621 * 120.24799 * 179.71703 * 12 11 10 14 14 C 1.40714 * 119.74200 * 0.57379 * 13 12 11 15 15 C 1.41404 * 120.24466 * 179.67973 * 14 13 12 16 16 H 1.08000 * 120.00128 * 155.31079 * 15 14 13 17 17 C 1.39945 * 119.99627 * 335.31488 * 15 14 13 18 18 N 1.30824 * 120.00314 * 342.22467 * 17 15 14 19 19 Si 1.86799 * 119.99805 * 162.23429 * 17 15 14 20 20 H 1.48499 * 109.47287 * 94.66102 * 19 17 15 21 21 H 1.48497 * 109.47010 * 214.66036 * 19 17 15 22 22 H 1.48506 * 109.47078 * 334.66147 * 19 17 15 23 23 C 1.40715 * 119.51442 * 359.70220 * 14 13 12 24 24 C 1.37615 * 119.74380 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.46536 * 298.77802 * 1 2 3 26 26 H 1.09007 * 109.46346 * 58.76940 * 1 2 3 27 27 H 1.08993 * 109.47198 * 178.76998 * 1 2 3 28 28 H 1.09003 * 110.37514 * 23.78375 * 4 2 1 29 29 H 1.09006 * 110.36932 * 261.44937 * 4 2 1 30 30 H 1.08998 * 110.36717 * 159.34505 * 6 5 4 31 31 H 1.08998 * 110.37405 * 281.56679 * 6 5 4 32 32 H 1.09001 * 109.47288 * 300.00021 * 10 9 7 33 33 H 1.09005 * 109.47367 * 59.99793 * 10 9 7 34 34 H 1.08006 * 119.88069 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.13234 * 180.28258 * 13 12 11 36 36 H 0.97001 * 119.99905 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.12857 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.88034 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0713 -0.7813 1.2177 5 8 3.2398 -1.4715 0.7238 6 6 2.8756 -1.9423 -0.5922 7 6 2.0714 -0.7814 -1.2182 8 1 2.7214 -0.1486 -1.8223 9 8 0.9933 -1.2877 -2.0076 10 6 1.3242 -1.4879 -3.3832 11 6 0.1208 -2.0213 -4.1170 12 6 -0.0775 -3.3902 -4.2093 13 6 -1.1760 -3.8884 -4.8720 14 6 -2.0931 -3.0027 -5.4674 15 6 -3.2218 -3.5032 -6.1566 16 1 -4.1049 -2.8908 -6.2630 17 6 -3.1944 -4.7922 -6.7008 18 7 -2.0508 -5.3998 -6.8865 19 14 -4.7909 -5.6453 -7.1623 20 1 -5.0747 -5.4191 -8.6022 21 1 -4.6656 -7.1025 -6.9055 22 1 -5.9014 -5.0924 -6.3460 23 6 -1.8786 -1.6153 -5.3722 24 6 -0.7762 -1.1394 -4.6998 25 1 -0.3632 0.4947 0.9008 26 1 -0.3632 0.5329 -0.8788 27 1 -0.3633 -1.0274 -0.0221 28 1 1.3285 -1.4971 1.5701 29 1 2.3465 -0.0940 2.0177 30 1 3.7687 -2.1469 -1.1825 31 1 2.2578 -2.8372 -0.5175 32 1 1.6289 -0.5393 -3.8254 33 1 2.1427 -2.2038 -3.4596 34 1 0.6305 -4.0683 -3.7560 35 1 -1.3311 -4.9552 -4.9389 36 1 -2.0319 -6.2934 -7.2634 37 1 -2.5759 -0.9266 -5.8259 38 1 -0.6091 -0.0750 -4.6258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705854422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:04 Heat of formation + Delta-G solvation = -98.252005 kcal Electronic energy + Delta-G solvation = -19262.303638 eV Core-core repulsion = 16261.388299 eV Total energy + Delta-G solvation = -3000.915338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84357 -39.54025 -37.89196 -35.64508 -34.07482 -32.29453 -31.18898 -29.91991 -28.39978 -27.10385 -25.33132 -23.70726 -22.90764 -21.83145 -21.17451 -19.24500 -18.03437 -17.43597 -17.20144 -16.64307 -16.33287 -16.08848 -15.68664 -15.59872 -14.90117 -14.65922 -14.31614 -14.06140 -13.82728 -13.53849 -13.27157 -13.16240 -12.98099 -12.89872 -12.67675 -12.37853 -12.10518 -11.96121 -11.85184 -11.49103 -11.39608 -11.28360 -11.01533 -10.89474 -10.36900 -9.39368 -9.28267 -8.66863 -6.36912 0.87132 1.13427 1.37634 1.46556 1.53534 2.19739 2.55022 2.86261 3.20814 3.54751 3.74696 3.79956 3.89862 4.17186 4.26346 4.28841 4.34237 4.52729 4.56186 4.59424 4.65725 4.71531 4.73028 4.78456 4.81904 5.02767 5.05505 5.14164 5.18460 5.34763 5.43811 5.46243 5.68495 5.70809 5.92479 6.08091 6.20719 6.35993 6.40580 6.67621 6.91467 7.00910 8.30517 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.003833 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.566882 B = 7302.819950 C = 7430.651931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.106 0.894 4 C 0.046 3.954 5 O -0.389 6.389 6 C 0.023 3.977 7 C 0.049 3.951 8 H 0.087 0.913 9 O -0.379 6.379 10 C 0.131 3.869 11 C -0.217 4.217 12 C -0.087 4.087 13 C -0.194 4.194 14 C 0.084 3.916 15 C -0.501 4.501 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.823 5.823 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.247 4.247 24 C -0.071 4.071 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.289 0.711 37 H 0.098 0.902 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 6.986 10.281 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 H 0.124 0.876 4 C -0.030 4.030 5 O -0.308 6.308 6 C -0.054 4.054 7 C -0.010 4.010 8 H 0.105 0.895 9 O -0.299 6.299 10 C 0.055 3.945 11 C -0.218 4.218 12 C -0.105 4.105 13 C -0.214 4.214 14 C 0.082 3.918 15 C -0.530 4.530 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.266 4.266 24 C -0.089 4.089 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.878 6.704 10.364 14.130 hybrid contribution -0.650 -0.632 -0.764 1.186 sum 6.227 6.073 9.599 12.954 Atomic orbital electron populations 1.21418 0.93427 1.01623 1.01752 1.22655 0.97664 1.00335 0.93265 0.87551 1.23687 0.87345 0.95298 0.96673 1.89087 1.36204 1.74312 1.31217 1.23989 1.00180 0.97027 0.84227 1.23617 0.89105 0.94786 0.93481 0.89537 1.88126 1.36217 1.85315 1.20239 1.21082 0.94017 0.98838 0.80545 1.19196 1.01123 0.92856 1.08628 1.20784 0.96820 0.94880 0.98021 1.21263 0.97891 0.99172 1.03042 1.18004 0.92514 0.91977 0.89350 1.19885 1.00726 1.00268 1.32138 0.90579 1.26778 1.01030 0.97211 0.92890 1.69875 1.28549 1.14240 1.32197 0.85196 0.77564 0.77667 0.79312 1.18555 1.18951 1.18300 1.21176 1.01050 0.94933 1.09477 1.20702 0.93659 0.98258 0.96324 0.90978 0.93116 0.93965 0.92226 0.86609 0.87704 0.92522 0.92210 0.92934 0.87791 0.88193 0.90033 0.88354 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.19 71.98 0.59 -2.30 16 2 C -0.12 -2.51 3.72 -9.77 -0.04 -2.55 16 3 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.05 0.92 7.18 72.48 0.52 1.44 16 5 O -0.39 -9.64 11.65 -148.98 -1.74 -11.38 16 6 C 0.02 0.56 7.37 72.48 0.53 1.09 16 7 C 0.05 1.19 3.55 31.61 0.11 1.30 16 8 H 0.09 1.84 7.86 -2.39 -0.02 1.83 16 9 O -0.38 -12.16 8.28 -148.98 -1.23 -13.39 16 10 C 0.13 4.32 5.92 71.24 0.42 4.74 16 11 C -0.22 -9.29 5.53 -19.67 -0.11 -9.40 16 12 C -0.09 -4.09 9.67 22.22 0.21 -3.88 16 13 C -0.19 -10.46 8.70 22.73 0.20 -10.26 16 14 C 0.08 4.63 5.57 -21.29 -0.12 4.51 16 15 C -0.50 -27.49 9.05 23.46 0.21 -27.27 16 16 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.04 1.84 5.14 85.26 0.44 2.28 16 18 N -0.82 -43.38 10.97 21.83 0.24 -43.14 16 19 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.25 -12.35 9.80 22.73 0.22 -12.12 16 24 C -0.07 -3.15 9.67 22.22 0.21 -2.93 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.30 8.05 -2.38 -0.02 1.28 16 27 H 0.04 1.17 7.75 -2.39 -0.02 1.15 16 28 H 0.06 1.23 7.87 -2.39 -0.02 1.21 16 29 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 32 H 0.06 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.05 1.60 8.08 -2.38 -0.02 1.58 16 34 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.10 5.62 6.18 -2.91 -0.02 5.61 16 36 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 37 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -60.97 315.73 3.74 -57.23 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.03 Total: 25.66 kcal Atomic # 6 Polarization: -58.76 SS G_CDS: 3.41 Total: -55.35 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.24 Total: -43.14 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -2.97 Total: -24.77 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -60.97 3.74 -57.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705854422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.025 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds