Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47111 * 2 1 4 4 N 1.46498 * 109.46984 * 184.82331 * 3 2 1 5 5 C 1.35590 * 125.68051 * 258.21349 * 4 3 2 6 6 C 1.35483 * 108.87826 * 180.02562 * 5 4 3 7 7 C 1.39802 * 107.88240 * 359.76290 * 6 5 4 8 8 C 1.37674 * 125.68156 * 78.24408 * 4 3 2 9 9 C 1.46540 * 126.24272 * 359.95729 * 8 4 3 10 10 O 1.21743 * 120.00391 * 7.34925 * 9 8 4 11 11 N 1.34775 * 120.00070 * 187.35451 * 9 8 4 12 12 C 1.36880 * 120.00425 * 183.84926 * 11 9 8 13 13 H 1.08001 * 119.99566 * 334.62090 * 12 11 9 14 14 C 1.39005 * 120.00501 * 154.62157 * 12 11 9 15 15 N 1.31398 * 119.99803 * 350.24553 * 14 12 11 16 16 Si 1.86790 * 120.00355 * 170.24645 * 14 12 11 17 17 H 1.48505 * 109.47641 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47167 * 300.00069 * 16 14 12 19 19 H 1.48499 * 109.47350 * 60.00201 * 16 14 12 20 20 C 1.46496 * 120.00081 * 3.85412 * 11 9 8 21 21 C 1.52996 * 117.50440 * 137.57208 * 20 11 9 22 22 C 1.53003 * 117.50406 * 68.90797 * 20 11 9 23 23 H 1.09000 * 109.46817 * 304.87399 * 1 2 3 24 24 H 1.09003 * 109.47387 * 64.87449 * 1 2 3 25 25 H 1.09002 * 109.47313 * 184.87848 * 1 2 3 26 26 H 1.08999 * 109.47332 * 240.00275 * 2 1 3 27 27 H 1.08994 * 109.47735 * 120.00050 * 2 1 3 28 28 H 1.08993 * 109.47025 * 64.82107 * 3 2 1 29 29 H 1.09008 * 109.46908 * 304.82015 * 3 2 1 30 30 H 1.07993 * 125.55886 * 0.02562 * 5 4 3 31 31 H 1.08003 * 126.05916 * 180.02562 * 6 5 4 32 32 H 1.08006 * 126.45774 * 180.23690 * 7 6 5 33 33 H 0.96998 * 120.00474 * 175.08433 * 15 14 12 34 34 H 1.09009 * 115.54957 * 283.23941 * 20 11 9 35 35 H 1.09005 * 117.49761 * 359.97438 * 21 20 11 36 36 H 1.09003 * 117.50392 * 145.01995 * 21 20 11 37 37 H 1.08999 * 117.50354 * 214.98633 * 22 20 11 38 38 H 1.09003 * 117.49291 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5003 1.4442 -0.1161 5 6 4.3744 1.6397 0.9018 6 6 5.6368 1.5725 0.4146 7 6 5.5544 1.3204 -0.9580 8 6 4.2138 1.2480 -1.2771 9 6 3.6521 1.0011 -2.6079 10 8 2.4510 1.0869 -2.7873 11 7 4.4652 0.6790 -3.6334 12 6 3.9509 0.5256 -4.8926 13 1 2.9136 0.2545 -5.0229 14 6 4.7636 0.7189 -6.0037 15 7 5.9645 1.2319 -5.8580 16 14 4.1486 0.2493 -7.7038 17 1 5.1972 0.5522 -8.7108 18 1 3.8383 -1.2026 -7.7344 19 1 2.9215 1.0244 -8.0178 20 6 5.8994 0.4927 -3.4004 21 6 6.5803 -0.6890 -4.0937 22 6 6.3301 -0.7276 -2.5840 23 1 -0.3633 0.5876 0.8431 24 1 -0.3634 0.4364 -0.9304 25 1 -0.3634 -1.0239 0.0874 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7489 1.9308 0.9300 29 1 1.6078 1.9807 -0.8437 30 1 4.1078 1.8197 1.9327 31 1 6.5458 1.6884 0.9862 32 1 6.3836 1.2064 -1.6406 33 1 6.5584 1.3008 -6.6217 34 1 6.4791 1.4081 -3.2810 35 1 5.9609 -1.3283 -4.7229 36 1 7.6079 -0.5513 -4.4301 37 1 7.1931 -0.6152 -1.9278 38 1 5.5461 -1.3916 -2.2200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706770359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = 58.034507 kcal Electronic energy + Delta-G solvation = -20560.757579 eV Core-core repulsion = 17598.912083 eV Total energy + Delta-G solvation = -2961.845495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73971 -38.28908 -36.13704 -34.65383 -32.96083 -31.26441 -30.59482 -28.63115 -25.67614 -24.99022 -22.26050 -21.69597 -21.39947 -20.72574 -19.70267 -18.30973 -17.06777 -16.37452 -15.24734 -15.11538 -14.67625 -14.44714 -14.06303 -14.00279 -13.32296 -13.10058 -13.03299 -12.47231 -12.15549 -12.06975 -11.64189 -11.56708 -11.42740 -11.12544 -11.08750 -10.96618 -10.54102 -10.49979 -10.40001 -10.37071 -9.82403 -9.13125 -8.78226 -8.38309 -8.06061 -7.69295 -7.45301 -6.28965 -3.87906 2.37875 3.20527 3.24627 3.26305 3.39831 3.44609 4.14232 4.44423 4.79622 4.87984 5.02780 5.14075 5.24609 5.38789 5.46201 5.57406 5.71722 5.82907 5.91003 5.94463 6.00152 6.06330 6.16926 6.20954 6.28469 6.39491 6.44481 6.51299 6.78121 6.81867 6.89230 7.05523 7.21041 7.47541 7.55284 7.72779 7.89648 8.15454 8.51234 9.17263 9.40319 9.99678 10.73205 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.007481 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.967170 B = 3741.885769 C = 4632.530476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.417 5.417 5 C -0.018 4.018 6 C -0.214 4.214 7 C -0.173 4.173 8 C -0.007 4.007 9 C 0.515 3.485 10 O -0.595 6.595 11 N -0.401 5.401 12 C -0.307 4.307 13 H 0.098 0.902 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.922 3.078 17 H -0.283 1.283 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.129 3.871 21 C -0.134 4.134 22 C -0.215 4.215 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.268 0.732 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -1.720 10.033 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.091 5.091 5 C -0.152 4.152 6 C -0.239 4.239 7 C -0.198 4.198 8 C -0.121 4.121 9 C 0.305 3.695 10 O -0.483 6.483 11 N -0.117 5.117 12 C -0.435 4.435 13 H 0.116 0.884 14 C -0.166 4.166 15 N -0.500 5.500 16 Si 0.748 3.252 17 H -0.209 1.209 18 H -0.200 1.200 19 H -0.198 1.198 20 C 0.024 3.976 21 C -0.171 4.171 22 C -0.253 4.253 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.421 -1.566 9.770 9.996 hybrid contribution -0.001 -0.166 -0.769 0.787 sum -1.422 -1.732 9.001 9.276 Atomic orbital electron populations 1.21638 0.94971 1.01595 1.01986 1.21774 0.96319 0.96113 1.02770 1.21930 0.77344 0.98679 1.03338 1.43973 1.05996 1.52514 1.06581 1.21728 0.89642 1.10908 0.92904 1.20737 0.95830 1.11773 0.95553 1.22225 0.95385 1.06197 0.95956 1.20597 0.90975 1.12564 0.87971 1.16778 0.86374 0.83381 0.82989 1.90603 1.14488 1.58572 1.84597 1.42706 1.04810 1.57500 1.06686 1.19522 0.97980 1.45570 0.80432 0.88407 1.25278 0.96038 0.95768 0.99548 1.69952 1.07738 1.40327 1.31952 0.86073 0.78507 0.79104 0.81499 1.20870 1.19974 1.19806 1.21115 0.83565 0.91767 1.01134 1.22824 1.00447 1.01423 0.92428 1.23638 1.02852 1.03602 0.95194 0.93132 0.91907 0.92626 0.90370 0.92522 0.90517 0.88028 0.82861 0.85216 0.82367 0.92138 0.87597 0.89342 0.89797 0.89328 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 37.15 0.37 -1.49 16 2 C -0.13 -2.04 6.10 -26.73 -0.16 -2.20 16 3 C 0.11 1.77 5.38 -4.04 -0.02 1.74 16 4 N -0.42 -7.73 2.77 -112.85 -0.31 -8.04 16 5 C -0.02 -0.29 11.36 -16.87 -0.19 -0.49 16 6 C -0.21 -3.56 10.81 -39.98 -0.43 -3.99 16 7 C -0.17 -3.37 8.22 -39.09 -0.32 -3.69 16 8 C -0.01 -0.16 6.65 -81.98 -0.55 -0.70 16 9 C 0.51 13.13 7.50 -12.91 -0.10 13.03 16 10 O -0.60 -16.29 13.86 5.15 0.07 -16.22 16 11 N -0.40 -10.37 2.92 -109.25 -0.32 -10.69 16 12 C -0.31 -8.46 8.82 -15.01 -0.13 -8.59 16 13 H 0.10 2.82 7.42 -52.49 -0.39 2.43 16 14 C 0.04 1.01 4.45 -17.45 -0.08 0.93 16 15 N -0.86 -22.27 10.28 55.50 0.57 -21.70 16 16 Si 0.92 20.48 29.57 -169.99 -5.03 15.45 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.13 2.91 2.21 -67.93 -0.15 2.76 16 21 C -0.13 -2.79 8.02 -26.69 -0.21 -3.00 16 22 C -0.21 -4.10 7.89 -26.69 -0.21 -4.31 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.51 7.43 -51.93 -0.39 1.12 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.10 1.90 6.87 -51.92 -0.36 1.55 16 30 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.16 3.03 3.58 -52.48 -0.19 2.85 16 33 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 34 H 0.11 2.44 6.99 -51.92 -0.36 2.08 16 35 H 0.09 2.00 7.51 -51.93 -0.39 1.61 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.09 1.46 7.77 -51.93 -0.40 1.05 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -29.77 306.98 -7.99 -37.76 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.41 Total: 8.80 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.19 Total: -9.99 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.06 Total: -40.43 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.07 Total: -16.22 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.77 -7.99 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706770359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.798 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds