Wall clock time and date at job start Mon Mar 30 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47111 * 2 1 4 4 N 1.46498 * 109.46984 * 184.82331 * 3 2 1 5 5 C 1.35590 * 125.68051 * 258.21349 * 4 3 2 6 6 C 1.35483 * 108.87826 * 180.02562 * 5 4 3 7 7 C 1.39802 * 107.88240 * 359.76290 * 6 5 4 8 8 C 1.37674 * 125.68156 * 78.24408 * 4 3 2 9 9 C 1.46540 * 126.24272 * 359.95729 * 8 4 3 10 10 O 1.21743 * 120.00391 * 7.34925 * 9 8 4 11 11 N 1.34775 * 120.00070 * 187.35451 * 9 8 4 12 12 C 1.36880 * 120.00425 * 183.84926 * 11 9 8 13 13 H 1.08001 * 119.99566 * 334.62090 * 12 11 9 14 14 C 1.39005 * 120.00501 * 154.62157 * 12 11 9 15 15 N 1.31398 * 119.99803 * 350.24553 * 14 12 11 16 16 Si 1.86790 * 120.00355 * 170.24645 * 14 12 11 17 17 H 1.48505 * 109.47641 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47167 * 300.00069 * 16 14 12 19 19 H 1.48499 * 109.47350 * 60.00201 * 16 14 12 20 20 C 1.46496 * 120.00081 * 3.85412 * 11 9 8 21 21 C 1.52996 * 117.50440 * 137.57208 * 20 11 9 22 22 C 1.53003 * 117.50406 * 68.90797 * 20 11 9 23 23 H 1.09000 * 109.46817 * 304.87399 * 1 2 3 24 24 H 1.09003 * 109.47387 * 64.87449 * 1 2 3 25 25 H 1.09002 * 109.47313 * 184.87848 * 1 2 3 26 26 H 1.08999 * 109.47332 * 240.00275 * 2 1 3 27 27 H 1.08994 * 109.47735 * 120.00050 * 2 1 3 28 28 H 1.08993 * 109.47025 * 64.82107 * 3 2 1 29 29 H 1.09008 * 109.46908 * 304.82015 * 3 2 1 30 30 H 1.07993 * 125.55886 * 0.02562 * 5 4 3 31 31 H 1.08003 * 126.05916 * 180.02562 * 6 5 4 32 32 H 1.08006 * 126.45774 * 180.23690 * 7 6 5 33 33 H 0.96998 * 120.00474 * 175.08433 * 15 14 12 34 34 H 1.09009 * 115.54957 * 283.23941 * 20 11 9 35 35 H 1.09005 * 117.49761 * 359.97438 * 21 20 11 36 36 H 1.09003 * 117.50392 * 145.01995 * 21 20 11 37 37 H 1.08999 * 117.50354 * 214.98633 * 22 20 11 38 38 H 1.09003 * 117.49291 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5003 1.4442 -0.1161 5 6 4.3744 1.6397 0.9018 6 6 5.6368 1.5725 0.4146 7 6 5.5544 1.3204 -0.9580 8 6 4.2138 1.2480 -1.2771 9 6 3.6521 1.0011 -2.6079 10 8 2.4510 1.0869 -2.7873 11 7 4.4652 0.6790 -3.6334 12 6 3.9509 0.5256 -4.8926 13 1 2.9136 0.2545 -5.0229 14 6 4.7636 0.7189 -6.0037 15 7 5.9645 1.2319 -5.8580 16 14 4.1486 0.2493 -7.7038 17 1 5.1972 0.5522 -8.7108 18 1 3.8383 -1.2026 -7.7344 19 1 2.9215 1.0244 -8.0178 20 6 5.8994 0.4927 -3.4004 21 6 6.5803 -0.6890 -4.0937 22 6 6.3301 -0.7276 -2.5840 23 1 -0.3633 0.5876 0.8431 24 1 -0.3634 0.4364 -0.9304 25 1 -0.3634 -1.0239 0.0874 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7489 1.9308 0.9300 29 1 1.6078 1.9807 -0.8437 30 1 4.1078 1.8197 1.9327 31 1 6.5458 1.6884 0.9862 32 1 6.3836 1.2064 -1.6406 33 1 6.5584 1.3008 -6.6217 34 1 6.4791 1.4081 -3.2810 35 1 5.9609 -1.3283 -4.7229 36 1 7.6079 -0.5513 -4.4301 37 1 7.1931 -0.6152 -1.9278 38 1 5.5461 -1.3916 -2.2200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706770359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:46 Heat of formation + Delta-G solvation = 41.407971 kcal Electronic energy + Delta-G solvation = -20561.478560 eV Core-core repulsion = 17598.912083 eV Total energy + Delta-G solvation = -2962.566476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.20719 -40.06028 -37.97218 -35.93244 -34.87581 -33.15655 -31.94041 -30.18131 -26.95448 -26.87582 -23.95635 -23.27938 -22.75211 -22.41615 -21.12692 -19.85916 -18.97128 -17.96957 -17.08078 -16.83100 -16.03580 -16.00969 -15.78629 -15.61320 -14.85403 -14.72105 -14.49047 -13.97583 -13.60476 -13.54393 -13.32568 -12.93374 -12.87092 -12.75072 -12.68087 -12.47648 -12.17035 -12.14802 -12.10828 -11.73144 -11.63339 -10.88472 -10.63797 -10.25024 -9.68675 -9.42119 -8.92642 -8.26690 -5.94954 0.81874 1.39439 1.42454 1.48665 1.99725 2.07211 2.32021 2.62760 3.02103 3.13648 3.33591 3.81531 3.95260 4.01659 4.22492 4.24760 4.33479 4.39969 4.44557 4.56272 4.58989 4.75202 4.78505 4.82279 4.88203 5.04190 5.14758 5.20444 5.30294 5.35094 5.40842 5.44736 5.47873 5.52152 6.00717 6.17644 6.24289 6.55988 6.64268 7.17893 7.46266 8.06184 8.73412 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.007481 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.967170 B = 3741.885769 C = 4632.530476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.106 3.894 4 N -0.422 5.422 5 C 0.009 3.991 6 C -0.221 4.221 7 C -0.165 4.165 8 C -0.060 4.060 9 C 0.502 3.498 10 O -0.634 6.634 11 N -0.417 5.417 12 C -0.346 4.346 13 H 0.066 0.934 14 C 0.013 3.987 15 N -0.872 5.872 16 Si 0.979 3.021 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.280 1.280 20 C 0.111 3.889 21 C -0.133 4.133 22 C -0.177 4.177 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.204 0.796 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -1.671 12.669 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.015 4.015 4 N -0.096 5.096 5 C -0.125 4.125 6 C -0.245 4.245 7 C -0.191 4.191 8 C -0.173 4.173 9 C 0.294 3.706 10 O -0.524 6.524 11 N -0.133 5.133 12 C -0.474 4.474 13 H 0.084 0.916 14 C -0.191 4.191 15 N -0.508 5.508 16 Si 0.803 3.197 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.206 1.206 20 C 0.007 3.993 21 C -0.171 4.171 22 C -0.215 4.215 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.083 0.917 30 H 0.221 0.779 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.112 -1.522 12.403 12.496 hybrid contribution -0.405 -0.130 -1.466 1.527 sum -0.517 -1.652 10.937 11.073 Atomic orbital electron populations 1.21607 0.93090 1.02791 1.02106 1.21696 0.97955 0.95424 1.01190 1.22057 0.76392 0.98999 1.04054 1.44212 1.06988 1.52152 1.06245 1.22604 0.88904 1.06914 0.94120 1.21138 0.97682 1.11520 0.94136 1.22368 0.94251 1.04797 0.97672 1.20184 0.92356 1.17243 0.87487 1.17492 0.86091 0.82327 0.84700 1.90546 1.16127 1.60063 1.85677 1.42870 1.06210 1.57943 1.06278 1.19412 0.97368 1.48232 0.82381 0.91567 1.25893 0.96124 0.95097 1.02034 1.70010 1.08073 1.39750 1.32992 0.85221 0.78008 0.78773 0.77689 1.19039 1.19516 1.20615 1.21118 0.81892 0.92389 1.03935 1.22775 1.00568 1.00233 0.93514 1.23587 1.03018 1.00378 0.94487 0.89909 0.94272 0.91461 0.95464 0.90326 0.85775 0.91657 0.77880 0.81699 0.82551 0.91574 0.88430 0.91756 0.88081 0.85574 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.83 6.10 30.59 0.19 -3.64 16 3 C 0.11 3.35 5.38 86.38 0.46 3.82 16 4 N -0.42 -15.07 2.77 -510.95 -1.42 -16.49 16 5 C 0.01 0.24 11.36 83.48 0.95 1.19 16 6 C -0.22 -6.48 10.81 22.01 0.24 -6.24 16 7 C -0.16 -6.21 8.22 22.59 0.19 -6.03 16 8 C -0.06 -2.64 6.65 40.33 0.27 -2.37 16 9 C 0.50 27.20 7.50 86.41 0.65 27.84 16 10 O -0.63 -37.59 13.86 -4.49 -0.06 -37.66 16 11 N -0.42 -22.80 2.92 -617.74 -1.80 -24.60 16 12 C -0.35 -20.28 8.82 84.09 0.74 -19.54 16 13 H 0.07 4.17 7.42 -2.91 -0.02 4.15 16 14 C 0.01 0.69 4.45 84.94 0.38 1.07 16 15 N -0.87 -45.69 10.28 21.67 0.22 -45.47 16 16 Si 0.98 43.08 29.57 68.60 2.03 45.11 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.11 5.11 2.21 44.99 0.10 5.21 16 21 C -0.13 -5.59 8.02 30.62 0.25 -5.35 16 22 C -0.18 -6.64 7.89 30.62 0.24 -6.39 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.12 2.70 8.10 -2.39 -0.02 2.68 16 29 H 0.06 2.55 6.87 -2.38 -0.02 2.54 16 30 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.16 5.83 3.58 -2.91 -0.01 5.82 16 33 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 34 H 0.10 4.59 6.99 -2.38 -0.02 4.57 16 35 H 0.06 3.00 7.51 -2.38 -0.02 2.98 16 36 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.13 3.78 7.77 -2.39 -0.02 3.76 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -70.57 306.98 5.37 -65.20 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.05 Total: 27.08 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.36 Total: -13.18 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -3.00 Total: -86.56 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.06 Total: -37.66 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -70.57 5.37 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706770359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.607 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds