Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47226 * 2 1 4 4 C 1.52997 * 109.47433 * 119.99676 * 2 1 3 5 5 C 1.50695 * 109.47288 * 184.99996 * 4 2 1 6 6 H 1.07993 * 120.00265 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99837 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00033 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47342 * 89.99851 * 9 7 5 11 11 H 1.48500 * 109.46795 * 210.00167 * 9 7 5 12 12 H 1.48505 * 109.46650 * 329.99853 * 9 7 5 13 13 O 1.42894 * 109.47320 * 240.00453 * 2 1 3 14 14 C 1.35984 * 117.00451 * 84.78587 * 13 2 1 15 15 C 1.38720 * 120.06718 * 354.62930 * 14 13 2 16 16 C 1.37940 * 119.90029 * 180.02562 * 15 14 13 17 17 C 1.39126 * 120.29736 * 0.04330 * 16 15 14 18 18 C 1.38355 * 119.77926 * 359.83800 * 17 16 15 19 19 C 1.38501 * 119.88430 * 0.17232 * 18 17 16 20 20 C 1.50777 * 121.40891 * 180.33023 * 18 17 16 21 21 C 1.53069 * 109.69251 * 342.17472 * 20 18 17 22 22 C 1.53409 * 108.29583 * 48.22341 * 21 20 18 23 23 O 1.35946 * 118.43933 * 179.69019 * 17 16 15 24 24 H 1.08998 * 109.46839 * 59.99779 * 1 2 3 25 25 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47119 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.47747 * 305.00571 * 4 2 1 28 28 H 1.09001 * 109.46552 * 65.00290 * 4 2 1 29 29 H 0.96995 * 119.99883 * 179.97438 * 8 7 5 30 30 H 1.07999 * 120.04857 * 0.10059 * 15 14 13 31 31 H 1.08008 * 119.85289 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.86556 * 179.66636 * 19 18 17 33 33 H 1.09001 * 109.43907 * 102.24543 * 20 18 17 34 34 H 1.09003 * 109.43280 * 222.11274 * 20 18 17 35 35 H 1.09007 * 109.69652 * 167.91943 * 21 20 18 36 36 H 1.09001 * 109.69809 * 288.52033 * 21 20 18 37 37 H 1.08995 * 109.68593 * 54.98563 * 22 21 20 38 38 H 1.09002 * 109.68523 * 175.50940 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1934 2.3578 8 7 5.5412 -1.1001 2.4134 9 14 3.3017 -2.1097 3.6947 10 1 3.1711 -3.5395 3.3157 11 1 4.0451 -2.0030 4.9758 12 1 1.9505 -1.5147 3.8553 13 8 2.0064 -0.6735 -1.1668 14 6 2.1084 0.0621 -2.3059 15 6 1.6535 1.3724 -2.3302 16 6 1.7582 2.1152 -3.4878 17 6 2.3175 1.5561 -4.6324 18 6 2.7733 0.2500 -4.6069 19 6 2.6675 -0.4952 -3.4443 20 6 3.3922 -0.3901 -5.8237 21 6 3.0205 0.4114 -7.0736 22 6 3.2836 1.8959 -6.7897 23 8 2.3962 2.3201 -5.7541 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2055 29 1 6.0255 -1.5068 3.1488 30 1 1.2192 1.8105 -1.4438 31 1 1.4042 3.1355 -3.5057 32 1 3.0185 -1.5165 -3.4263 33 1 4.4765 -0.4070 -5.7128 34 1 3.0227 -1.4107 -5.9242 35 1 3.6316 0.0844 -7.9150 36 1 1.9658 0.2629 -7.3051 37 1 4.3159 2.0306 -6.4668 38 1 3.1019 2.4801 -7.6918 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709989232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -65.816063 kcal Electronic energy + Delta-G solvation = -19500.042313 eV Core-core repulsion = 16500.533503 eV Total energy + Delta-G solvation = -2999.508810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57007 -39.02854 -36.32065 -34.22593 -33.39026 -31.76046 -30.38037 -29.02618 -28.01387 -25.56149 -23.80604 -22.85503 -22.37642 -20.70623 -19.35995 -17.64687 -17.29817 -16.73096 -16.44701 -15.44774 -14.80717 -14.50956 -14.43646 -14.22582 -13.86250 -13.39265 -13.19148 -13.00474 -12.82018 -12.63116 -12.25645 -11.98713 -11.91336 -11.76251 -11.33942 -11.10614 -10.96420 -10.80310 -10.54241 -10.20649 -9.99392 -9.82979 -9.48081 -9.21241 -8.60755 -8.53847 -7.31808 -6.02973 -4.00906 1.48632 1.78448 3.30909 3.37830 3.39257 3.39862 3.88260 4.00427 4.44630 4.61161 4.63835 4.76548 4.97845 5.14023 5.25045 5.31327 5.34346 5.47180 5.48529 5.55111 5.61235 5.64151 5.78259 5.80946 5.92999 6.00216 6.05880 6.21598 6.28941 6.41781 6.54554 6.60430 6.71678 6.84866 7.07721 7.17849 7.58735 7.73336 8.14708 8.53115 9.02409 9.57633 11.10616 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.004504 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.926133 B = 6214.789094 C = 6622.310589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.514 4.514 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.291 6.291 14 C 0.126 3.874 15 C -0.182 4.182 16 C -0.107 4.107 17 C 0.075 3.925 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.078 4.078 21 C -0.158 4.158 22 C 0.062 3.938 23 O -0.321 6.321 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 4.194 -16.339 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.039 3.961 3 H 0.086 0.914 4 C -0.048 4.048 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.191 1.191 13 O -0.204 6.204 14 C 0.079 3.921 15 C -0.200 4.200 16 C -0.126 4.126 17 C 0.031 3.969 18 C -0.121 4.121 19 C -0.147 4.147 20 C -0.115 4.115 21 C -0.196 4.196 22 C -0.014 4.014 23 O -0.236 6.236 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.589 4.104 -16.218 18.370 hybrid contribution -0.215 -0.528 0.822 1.000 sum -7.804 3.577 -15.397 17.628 Atomic orbital electron populations 1.22455 0.96991 1.02624 1.01735 1.22551 0.91579 0.97201 0.84719 0.91449 1.19732 0.98130 0.96206 0.90725 1.21017 0.89377 1.35318 1.09529 0.90880 1.24998 0.94732 0.95835 0.97819 1.69914 1.06519 1.45386 1.32278 0.86807 0.80337 0.80724 0.81574 1.20218 1.21353 1.19078 1.86258 1.80399 1.37756 1.15987 1.18980 0.94895 0.90460 0.87761 1.21165 1.05660 0.94356 0.98862 1.20299 1.02159 1.00013 0.90083 1.18428 1.01958 0.89705 0.86769 1.19486 1.03628 0.93120 0.95872 1.20139 1.03133 1.01005 0.90429 1.20466 1.00724 0.99308 0.90977 1.22223 1.03066 0.95862 0.98414 1.22873 0.93335 0.95245 0.89920 1.85964 1.62086 1.50035 1.25489 0.92871 0.91951 0.91400 0.94548 0.95808 0.92742 0.84631 0.85473 0.85113 0.90280 0.89958 0.90021 0.90575 0.92078 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.17 37.16 0.34 -2.56 16 2 C 0.10 1.93 2.17 -26.73 -0.06 1.87 16 3 H 0.07 1.35 6.32 -51.92 -0.33 1.02 16 4 C -0.01 -0.26 3.75 -27.89 -0.10 -0.36 16 5 C -0.51 -14.80 9.43 -34.44 -0.32 -15.12 16 6 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 O -0.29 -6.22 9.56 -19.69 -0.19 -6.40 16 14 C 0.13 2.36 6.59 -39.29 -0.26 2.10 16 15 C -0.18 -3.03 8.23 -39.51 -0.33 -3.36 16 16 C -0.11 -1.64 9.93 -39.36 -0.39 -2.03 16 17 C 0.08 1.15 6.47 -39.21 -0.25 0.90 16 18 C -0.12 -1.79 5.75 -104.44 -0.60 -2.39 16 19 C -0.13 -2.18 9.60 -39.38 -0.38 -2.56 16 20 C -0.08 -0.87 5.86 -27.81 -0.16 -1.03 16 21 C -0.16 -1.43 6.19 -26.48 -0.16 -1.60 16 22 C 0.06 0.61 7.03 37.37 0.26 0.87 16 23 O -0.32 -4.40 10.27 -19.57 -0.20 -4.61 16 24 H 0.05 0.77 6.90 -51.93 -0.36 0.41 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.84 7.20 -51.93 -0.37 0.46 16 28 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.14 2.10 5.43 -52.49 -0.29 1.81 16 31 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -32.31 308.63 -7.70 -40.01 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.55 Total: 0.08 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.52 Total: -23.41 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.39 Total: -11.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.31 -7.70 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.807 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds