Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47226 * 2 1 4 4 C 1.52997 * 109.47433 * 119.99676 * 2 1 3 5 5 C 1.50695 * 109.47288 * 184.99996 * 4 2 1 6 6 H 1.07993 * 120.00265 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99837 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00033 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47342 * 89.99851 * 9 7 5 11 11 H 1.48500 * 109.46795 * 210.00167 * 9 7 5 12 12 H 1.48505 * 109.46650 * 329.99853 * 9 7 5 13 13 O 1.42894 * 109.47320 * 240.00453 * 2 1 3 14 14 C 1.35984 * 117.00451 * 84.78587 * 13 2 1 15 15 C 1.38720 * 120.06718 * 354.62930 * 14 13 2 16 16 C 1.37940 * 119.90029 * 180.02562 * 15 14 13 17 17 C 1.39126 * 120.29736 * 0.04330 * 16 15 14 18 18 C 1.38355 * 119.77926 * 359.83800 * 17 16 15 19 19 C 1.38501 * 119.88430 * 0.17232 * 18 17 16 20 20 C 1.50777 * 121.40891 * 180.33023 * 18 17 16 21 21 C 1.53069 * 109.69251 * 342.17472 * 20 18 17 22 22 C 1.53409 * 108.29583 * 48.22341 * 21 20 18 23 23 O 1.35946 * 118.43933 * 179.69019 * 17 16 15 24 24 H 1.08998 * 109.46839 * 59.99779 * 1 2 3 25 25 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47119 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.47747 * 305.00571 * 4 2 1 28 28 H 1.09001 * 109.46552 * 65.00290 * 4 2 1 29 29 H 0.96995 * 119.99883 * 179.97438 * 8 7 5 30 30 H 1.07999 * 120.04857 * 0.10059 * 15 14 13 31 31 H 1.08008 * 119.85289 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.86556 * 179.66636 * 19 18 17 33 33 H 1.09001 * 109.43907 * 102.24543 * 20 18 17 34 34 H 1.09003 * 109.43280 * 222.11274 * 20 18 17 35 35 H 1.09007 * 109.69652 * 167.91943 * 21 20 18 36 36 H 1.09001 * 109.69809 * 288.52033 * 21 20 18 37 37 H 1.08995 * 109.68593 * 54.98563 * 22 21 20 38 38 H 1.09002 * 109.68523 * 175.50940 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1934 2.3578 8 7 5.5412 -1.1001 2.4134 9 14 3.3017 -2.1097 3.6947 10 1 3.1711 -3.5395 3.3157 11 1 4.0451 -2.0030 4.9758 12 1 1.9505 -1.5147 3.8553 13 8 2.0064 -0.6735 -1.1668 14 6 2.1084 0.0621 -2.3059 15 6 1.6535 1.3724 -2.3302 16 6 1.7582 2.1152 -3.4878 17 6 2.3175 1.5561 -4.6324 18 6 2.7733 0.2500 -4.6069 19 6 2.6675 -0.4952 -3.4443 20 6 3.3922 -0.3901 -5.8237 21 6 3.0205 0.4114 -7.0736 22 6 3.2836 1.8959 -6.7897 23 8 2.3962 2.3201 -5.7541 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2055 29 1 6.0255 -1.5068 3.1488 30 1 1.2192 1.8105 -1.4438 31 1 1.4042 3.1355 -3.5057 32 1 3.0185 -1.5165 -3.4263 33 1 4.4765 -0.4070 -5.7128 34 1 3.0227 -1.4107 -5.9242 35 1 3.6316 0.0844 -7.9150 36 1 1.9658 0.2629 -7.3051 37 1 4.3159 2.0306 -6.4668 38 1 3.1019 2.4801 -7.6918 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709989232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -85.546722 kcal Electronic energy + Delta-G solvation = -19500.897899 eV Core-core repulsion = 16500.533503 eV Total energy + Delta-G solvation = -3000.364396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72411 -40.35782 -37.59539 -35.35203 -35.15660 -33.60833 -31.49129 -30.28981 -29.79080 -26.54823 -25.18534 -24.42770 -23.60772 -22.17615 -20.57636 -19.02269 -18.81759 -18.51158 -17.60478 -16.53773 -16.43813 -15.96599 -15.73255 -15.41758 -15.06889 -14.71099 -14.58953 -14.38749 -14.04976 -13.88474 -13.79860 -13.55472 -13.49172 -13.09575 -12.58533 -12.48227 -12.29644 -11.93787 -11.80793 -11.72387 -11.53975 -11.46751 -11.25103 -10.95223 -10.77066 -9.82660 -8.60944 -8.28282 -6.32543 0.24894 0.50164 1.36710 1.38730 1.49941 2.33219 2.36701 2.53895 2.75380 3.08064 3.69009 3.78793 3.83846 3.93936 4.00031 4.13304 4.18082 4.22451 4.39787 4.45395 4.53671 4.63642 4.71314 4.75155 4.91786 4.92261 4.97203 4.98449 5.04949 5.09433 5.18644 5.23147 5.34893 5.41826 5.44249 5.61484 5.67971 6.25124 6.48441 6.69013 6.76355 7.30063 8.89205 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.004504 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.926133 B = 6214.789094 C = 6622.310589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.524 4.524 6 H 0.023 0.977 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.237 1.237 13 O -0.322 6.322 14 C 0.091 3.909 15 C -0.186 4.186 16 C -0.112 4.112 17 C 0.075 3.925 18 C -0.121 4.121 19 C -0.145 4.145 20 C -0.082 4.082 21 C -0.150 4.150 22 C 0.050 3.950 23 O -0.330 6.330 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 4.371 -17.331 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.562 4.562 6 H 0.041 0.959 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.160 1.160 13 O -0.237 6.237 14 C 0.046 3.954 15 C -0.204 4.204 16 C -0.131 4.131 17 C 0.030 3.970 18 C -0.122 4.122 19 C -0.164 4.164 20 C -0.119 4.119 21 C -0.188 4.188 22 C -0.024 4.024 23 O -0.245 6.245 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.425 4.299 -17.241 20.114 hybrid contribution 0.472 -0.500 0.935 1.161 sum -8.953 3.799 -16.306 18.986 Atomic orbital electron populations 1.22346 0.93311 1.03371 1.03551 1.22473 0.94319 0.95980 0.83389 0.92208 1.19701 0.94634 0.96912 0.93473 1.21295 0.92212 1.34497 1.08168 0.95892 1.26048 0.95637 0.96898 1.00826 1.70086 1.08721 1.47049 1.33623 0.85615 0.79973 0.79186 0.77605 1.19566 1.20904 1.16048 1.86167 1.81557 1.38990 1.16944 1.19293 0.97076 0.91603 0.87457 1.21260 1.05699 0.93675 0.99786 1.20587 1.01834 1.00879 0.89784 1.18607 1.01029 0.89910 0.87415 1.19867 1.02830 0.93088 0.96424 1.20348 1.03615 1.01377 0.91047 1.20613 1.00816 1.00011 0.90446 1.22221 1.03625 0.94784 0.98133 1.23273 0.92880 0.96462 0.89833 1.85959 1.62942 1.50068 1.25524 0.91342 0.91706 0.89262 0.92824 0.95697 0.92539 0.83860 0.83323 0.85403 0.89648 0.88962 0.86797 0.90689 0.91843 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 9.17 71.98 0.66 -4.45 16 2 C 0.09 3.83 2.17 30.59 0.07 3.90 16 3 H 0.06 2.46 6.32 -2.38 -0.02 2.45 16 4 C -0.01 -0.48 3.75 29.85 0.11 -0.37 16 5 C -0.52 -31.21 9.43 25.60 0.24 -30.97 16 6 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 7 C 0.00 0.13 5.47 84.65 0.46 0.59 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 13 O -0.32 -14.29 9.56 -93.37 -0.89 -15.18 16 14 C 0.09 3.55 6.59 22.46 0.15 3.70 16 15 C -0.19 -6.27 8.23 22.31 0.18 -6.08 16 16 C -0.11 -3.39 9.93 22.41 0.22 -3.16 16 17 C 0.07 2.22 6.47 22.51 0.15 2.37 16 18 C -0.12 -3.58 5.75 -19.75 -0.11 -3.69 16 19 C -0.15 -5.11 9.60 22.40 0.22 -4.90 16 20 C -0.08 -1.71 5.86 29.90 0.18 -1.54 16 21 C -0.15 -2.28 6.19 30.75 0.19 -2.09 16 22 C 0.05 0.84 7.03 72.12 0.51 1.35 16 23 O -0.33 -8.40 10.27 -92.94 -0.95 -9.36 16 24 H 0.07 1.86 6.90 -2.39 -0.02 1.85 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.05 2.35 7.20 -2.39 -0.02 2.34 16 28 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 29 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.14 4.45 5.43 -2.91 -0.02 4.44 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.12 308.63 4.54 -68.58 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.99 Total: 16.06 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 3.22 Total: -45.34 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.85 Total: -24.54 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -73.12 4.54 -68.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.970 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds