Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.87106 * 2 1 4 4 H 1.07997 * 120.00036 * 114.78576 * 3 2 1 5 5 C 1.37875 * 119.99873 * 294.78314 * 3 2 1 6 6 N 1.31513 * 120.00330 * 353.72780 * 5 3 2 7 7 Si 1.86804 * 119.99875 * 173.73053 * 5 3 2 8 8 H 1.48502 * 109.47482 * 60.00031 * 7 5 3 9 9 H 1.48509 * 109.47197 * 300.00061 * 7 5 3 10 10 H 1.48500 * 109.47363 * 180.02562 * 7 5 3 11 11 C 1.54101 * 109.87861 * 121.00693 * 2 1 3 12 12 C 1.54814 * 104.18858 * 121.59956 * 11 2 1 13 13 C 1.54996 * 102.08836 * 20.88548 * 12 11 2 14 14 H 1.08996 * 110.61835 * 81.47530 * 13 12 11 15 15 C 1.50704 * 110.61516 * 204.31363 * 13 12 11 16 16 N 1.30503 * 125.64836 * 75.02528 * 15 13 12 17 17 C 1.34124 * 109.25546 * 180.02562 * 16 15 13 18 18 C 1.34672 * 108.02193 * 0.02562 * 17 16 15 19 19 N 1.35038 * 125.65149 * 254.71791 * 15 13 12 20 20 C 1.46511 * 126.39611 * 0.02562 * 19 15 13 21 21 C 1.52999 * 117.49718 * 188.62006 * 20 19 15 22 22 C 1.52994 * 60.00094 * 252.51256 * 21 20 19 23 23 O 1.43749 * 109.87769 * 238.99253 * 2 1 3 24 24 H 1.09004 * 109.47174 * 56.14889 * 1 2 3 25 25 H 1.08998 * 109.47276 * 176.14505 * 1 2 3 26 26 H 1.09003 * 109.47272 * 296.14747 * 1 2 3 27 27 H 0.96993 * 119.99631 * 3.63370 * 6 5 3 28 28 H 1.08997 * 110.49049 * 240.28016 * 11 2 1 29 29 H 1.09003 * 110.48493 * 2.79328 * 11 2 1 30 30 H 1.09006 * 110.90233 * 139.07905 * 12 11 2 31 31 H 1.08993 * 110.91115 * 262.64534 * 12 11 2 32 32 H 1.08002 * 125.99350 * 180.02562 * 17 16 15 33 33 H 1.07999 * 126.59064 * 180.02562 * 18 17 16 34 34 H 1.08990 * 115.54512 * 334.32930 * 20 19 15 35 35 H 1.09003 * 117.49843 * 0.02562 * 21 20 19 36 36 H 1.08999 * 117.49721 * 145.01616 * 21 20 19 37 37 H 1.09000 * 117.50019 * 252.51035 * 22 21 20 38 38 H 1.09003 * 117.50083 * 107.49294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4172 0.0000 4 1 2.5945 1.7918 0.8491 5 6 1.8058 2.2357 -1.0841 6 7 1.2429 1.7462 -2.1672 7 14 2.2851 4.0398 -1.0144 8 1 3.7486 4.1549 -0.7904 9 1 1.5603 4.7020 0.0999 10 1 1.9270 4.6971 -2.2970 11 6 2.0540 -0.7465 1.2421 12 6 2.9226 -1.8883 0.6602 13 6 3.2417 -1.3609 -0.7619 14 1 4.0708 -0.6539 -0.7320 15 6 3.5540 -2.5034 -1.6938 16 7 2.6811 -3.3264 -2.2073 17 6 3.3156 -4.2142 -2.9871 18 6 4.6318 -3.9309 -2.9553 19 7 4.7827 -2.8414 -2.1405 20 6 6.0427 -2.1708 -1.8100 21 6 7.2924 -2.5937 -2.5848 22 6 7.1258 -3.0026 -1.1200 23 8 2.0187 -0.6964 -1.1587 24 1 -0.3634 0.5725 -0.8535 25 1 -0.3634 -1.0253 -0.0691 26 1 -0.3634 0.4529 0.9225 27 1 0.9461 0.8230 -2.1845 28 1 2.6597 -0.0827 1.8589 29 1 1.2246 -1.1526 1.8212 30 1 3.8358 -2.0171 1.2414 31 1 2.3593 -2.8202 0.6129 32 1 2.8523 -5.0158 -3.5432 33 1 5.4166 -4.4582 -3.4772 34 1 5.9567 -1.1219 -1.5267 35 1 7.1770 -3.3705 -3.3408 36 1 8.0288 -1.8228 -2.8116 37 1 7.7526 -2.5007 -0.3829 38 1 6.9008 -4.0487 -0.9119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711749812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = 45.970203 kcal Electronic energy + Delta-G solvation = -20416.924581 eV Core-core repulsion = 17454.555938 eV Total energy + Delta-G solvation = -2962.368643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85317 -38.42205 -37.30688 -33.17594 -31.62563 -31.11933 -30.52372 -28.45325 -25.19348 -24.51126 -23.27645 -22.77516 -21.54992 -20.47153 -19.58686 -19.09055 -17.40647 -17.05331 -15.56686 -15.17060 -14.67459 -14.48625 -13.83316 -13.77632 -13.70459 -13.47256 -12.82949 -12.68483 -12.15729 -11.87641 -11.86685 -11.40086 -11.15508 -11.00862 -10.88023 -10.82705 -10.65934 -10.52694 -10.20871 -9.99865 -9.56953 -9.49638 -9.22950 -9.10277 -8.35735 -8.06471 -7.79590 -6.19751 -4.04383 2.20571 2.81046 3.44210 3.46637 3.48412 3.56971 3.65705 4.31095 4.55651 4.57405 4.60686 4.71842 4.95333 5.19752 5.28994 5.44397 5.49031 5.53479 5.58387 5.62196 5.74686 5.77567 5.89396 6.10412 6.17929 6.27329 6.47459 6.59019 6.64260 6.77230 6.77941 6.94069 7.04611 7.15255 7.45186 7.61907 8.10936 8.33330 8.52679 8.60442 9.00941 9.80103 11.18405 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.006784 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.028952 B = 4126.451103 C = 4604.817815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.206 3.794 3 C -0.627 4.627 4 H 0.050 0.950 5 C 0.035 3.965 6 N -0.889 5.889 7 Si 1.061 2.939 8 H -0.290 1.290 9 H -0.288 1.288 10 H -0.283 1.283 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.172 3.828 14 H 0.072 0.928 15 C 0.237 3.763 16 N -0.469 5.469 17 C -0.030 4.030 18 C -0.074 4.074 19 N -0.427 5.427 20 C 0.056 3.944 21 C -0.173 4.173 22 C -0.178 4.178 23 O -0.349 6.349 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.290 0.710 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -9.424 1.935 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 C -0.664 4.664 4 H 0.068 0.932 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.890 3.110 8 H -0.217 1.217 9 H -0.214 1.214 10 H -0.208 1.208 11 C -0.171 4.171 12 C -0.176 4.176 13 C 0.112 3.888 14 H 0.089 0.911 15 C -0.025 4.025 16 N -0.186 5.186 17 C -0.178 4.178 18 C -0.206 4.206 19 N -0.109 5.109 20 C -0.049 4.049 21 C -0.210 4.210 22 C -0.216 4.216 23 O -0.267 6.267 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.370 -7.952 0.980 13.105 hybrid contribution 1.078 -1.485 0.815 2.009 sum 11.449 -9.437 1.796 14.945 Atomic orbital electron populations 1.21857 0.96674 0.98840 1.01482 1.19911 0.91317 0.91087 0.80818 1.22199 1.41489 0.96165 1.06559 0.93177 1.25664 0.94645 1.04890 0.92224 1.70623 1.35153 1.19891 1.26846 0.83692 0.76013 0.75379 0.75940 1.21701 1.21447 1.20846 1.22968 0.98545 0.95959 0.99631 1.23021 0.99799 0.99463 0.95327 1.20811 0.92195 0.87188 0.88624 0.91059 1.23291 0.79238 0.99297 1.00708 1.70345 1.31269 1.05200 1.11825 1.22307 0.90505 1.01660 1.03371 1.22427 0.99703 0.95026 1.03412 1.44756 1.06657 1.23768 1.35748 1.22050 0.79143 0.97678 1.06007 1.23355 0.98210 1.04160 0.95297 1.23456 1.00997 1.01341 0.95784 1.89099 1.35675 1.66330 1.35639 0.91971 0.95329 0.93275 0.89563 0.91440 0.92498 0.91880 0.91099 0.81627 0.81503 0.83710 0.87930 0.87070 0.87174 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.35 37.16 0.31 -2.90 16 2 C 0.21 5.23 0.70 -91.20 -0.06 5.16 16 3 C -0.63 -17.32 8.14 -34.44 -0.28 -17.60 16 4 H 0.05 1.36 7.35 -52.49 -0.39 0.97 16 5 C 0.04 1.00 5.20 -17.82 -0.09 0.91 16 6 N -0.89 -27.32 12.91 55.43 0.72 -26.61 16 7 Si 1.06 25.05 29.91 -169.99 -5.08 19.96 16 8 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C -0.13 -2.81 6.26 -25.20 -0.16 -2.97 16 12 C -0.14 -2.66 6.57 -24.72 -0.16 -2.82 16 13 C 0.17 3.78 3.61 -26.83 -0.10 3.69 16 14 H 0.07 1.56 6.99 -51.93 -0.36 1.20 16 15 C 0.24 4.87 6.89 -155.41 -1.07 3.80 16 16 N -0.47 -10.07 11.23 -10.81 -0.12 -10.19 16 17 C -0.03 -0.51 11.87 -17.81 -0.21 -0.72 16 18 C -0.07 -1.10 10.86 -16.56 -0.18 -1.28 16 19 N -0.43 -7.04 3.08 -106.83 -0.33 -7.37 16 20 C 0.06 0.72 6.55 -67.93 -0.44 0.28 16 21 C -0.17 -1.61 9.99 -26.73 -0.27 -1.88 16 22 C -0.18 -1.69 10.40 -26.73 -0.28 -1.97 16 23 O -0.35 -9.27 8.66 -35.23 -0.30 -9.57 16 24 H 0.06 1.67 6.17 -51.93 -0.32 1.35 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.29 9.12 4.88 -40.82 -0.20 8.92 16 28 H 0.07 1.39 7.40 -51.93 -0.38 1.01 16 29 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 32 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.17 1.81 7.13 -52.49 -0.37 1.43 16 34 H 0.15 1.93 7.19 -51.93 -0.37 1.56 16 35 H 0.10 0.90 6.90 -51.93 -0.36 0.54 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -33.74 309.18 -8.79 -42.53 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.33 Total: 4.90 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.00 Total: -18.31 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.26 Total: -44.17 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.30 Total: -9.57 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.74 -8.79 -42.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711749812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.499 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds