Wall clock time and date at job start Mon Mar 30 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.87106 * 2 1 4 4 H 1.07997 * 120.00036 * 114.78576 * 3 2 1 5 5 C 1.37875 * 119.99873 * 294.78314 * 3 2 1 6 6 N 1.31513 * 120.00330 * 353.72780 * 5 3 2 7 7 Si 1.86804 * 119.99875 * 173.73053 * 5 3 2 8 8 H 1.48502 * 109.47482 * 60.00031 * 7 5 3 9 9 H 1.48509 * 109.47197 * 300.00061 * 7 5 3 10 10 H 1.48500 * 109.47363 * 180.02562 * 7 5 3 11 11 C 1.54101 * 109.87861 * 121.00693 * 2 1 3 12 12 C 1.54814 * 104.18858 * 121.59956 * 11 2 1 13 13 C 1.54996 * 102.08836 * 20.88548 * 12 11 2 14 14 H 1.08996 * 110.61835 * 81.47530 * 13 12 11 15 15 C 1.50704 * 110.61516 * 204.31363 * 13 12 11 16 16 N 1.30503 * 125.64836 * 75.02528 * 15 13 12 17 17 C 1.34124 * 109.25546 * 180.02562 * 16 15 13 18 18 C 1.34672 * 108.02193 * 0.02562 * 17 16 15 19 19 N 1.35038 * 125.65149 * 254.71791 * 15 13 12 20 20 C 1.46511 * 126.39611 * 0.02562 * 19 15 13 21 21 C 1.52999 * 117.49718 * 188.62006 * 20 19 15 22 22 C 1.52994 * 60.00094 * 252.51256 * 21 20 19 23 23 O 1.43749 * 109.87769 * 238.99253 * 2 1 3 24 24 H 1.09004 * 109.47174 * 56.14889 * 1 2 3 25 25 H 1.08998 * 109.47276 * 176.14505 * 1 2 3 26 26 H 1.09003 * 109.47272 * 296.14747 * 1 2 3 27 27 H 0.96993 * 119.99631 * 3.63370 * 6 5 3 28 28 H 1.08997 * 110.49049 * 240.28016 * 11 2 1 29 29 H 1.09003 * 110.48493 * 2.79328 * 11 2 1 30 30 H 1.09006 * 110.90233 * 139.07905 * 12 11 2 31 31 H 1.08993 * 110.91115 * 262.64534 * 12 11 2 32 32 H 1.08002 * 125.99350 * 180.02562 * 17 16 15 33 33 H 1.07999 * 126.59064 * 180.02562 * 18 17 16 34 34 H 1.08990 * 115.54512 * 334.32930 * 20 19 15 35 35 H 1.09003 * 117.49843 * 0.02562 * 21 20 19 36 36 H 1.08999 * 117.49721 * 145.01616 * 21 20 19 37 37 H 1.09000 * 117.50019 * 252.51035 * 22 21 20 38 38 H 1.09003 * 117.50083 * 107.49294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4172 0.0000 4 1 2.5945 1.7918 0.8491 5 6 1.8058 2.2357 -1.0841 6 7 1.2429 1.7462 -2.1672 7 14 2.2851 4.0398 -1.0144 8 1 3.7486 4.1549 -0.7904 9 1 1.5603 4.7020 0.0999 10 1 1.9270 4.6971 -2.2970 11 6 2.0540 -0.7465 1.2421 12 6 2.9226 -1.8883 0.6602 13 6 3.2417 -1.3609 -0.7619 14 1 4.0708 -0.6539 -0.7320 15 6 3.5540 -2.5034 -1.6938 16 7 2.6811 -3.3264 -2.2073 17 6 3.3156 -4.2142 -2.9871 18 6 4.6318 -3.9309 -2.9553 19 7 4.7827 -2.8414 -2.1405 20 6 6.0427 -2.1708 -1.8100 21 6 7.2924 -2.5937 -2.5848 22 6 7.1258 -3.0026 -1.1200 23 8 2.0187 -0.6964 -1.1587 24 1 -0.3634 0.5725 -0.8535 25 1 -0.3634 -1.0253 -0.0691 26 1 -0.3634 0.4529 0.9225 27 1 0.9461 0.8230 -2.1845 28 1 2.6597 -0.0827 1.8589 29 1 1.2246 -1.1526 1.8212 30 1 3.8358 -2.0171 1.2414 31 1 2.3593 -2.8202 0.6129 32 1 2.8523 -5.0158 -3.5432 33 1 5.4166 -4.4582 -3.4772 34 1 5.9567 -1.1219 -1.5267 35 1 7.1770 -3.3705 -3.3408 36 1 8.0288 -1.8228 -2.8116 37 1 7.7526 -2.5007 -0.3829 38 1 6.9008 -4.0487 -0.9119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711749812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:44 Heat of formation + Delta-G solvation = 25.501767 kcal Electronic energy + Delta-G solvation = -20417.812159 eV Core-core repulsion = 17454.555938 eV Total energy + Delta-G solvation = -2963.256221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.14710 -40.23608 -38.23197 -35.17908 -32.98068 -32.81651 -32.27069 -30.03081 -27.15192 -26.33648 -24.37289 -23.52246 -23.18321 -21.77909 -21.47535 -20.41500 -19.09182 -18.58988 -16.97143 -16.42656 -16.06427 -15.85639 -15.67733 -15.59785 -15.11217 -14.64912 -14.59699 -14.03686 -13.71471 -13.68058 -13.10193 -12.89735 -12.57369 -12.51425 -12.45472 -12.42025 -12.30159 -11.96561 -11.88368 -11.77782 -11.38354 -11.11444 -10.85582 -10.50808 -10.30042 -9.85691 -9.31826 -8.43005 -6.28492 0.95186 1.52875 1.60718 1.66265 1.79751 2.13693 2.61671 2.69424 3.11969 3.34646 3.45472 3.52913 3.75172 3.78148 3.86283 3.96414 4.10576 4.31004 4.43631 4.49416 4.58961 4.60484 4.66433 4.73249 4.75191 4.85043 4.89133 4.91927 4.97916 5.06883 5.16382 5.21459 5.36861 5.65471 5.83715 6.00937 6.18429 6.26879 6.60888 6.74640 7.20237 7.65635 8.92573 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.006784 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.028952 B = 4126.451103 C = 4604.817815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.189 3.811 3 C -0.631 4.631 4 H 0.052 0.948 5 C -0.016 4.016 6 N -0.924 5.924 7 Si 1.107 2.893 8 H -0.271 1.271 9 H -0.269 1.269 10 H -0.291 1.291 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.169 3.831 14 H 0.061 0.939 15 C 0.198 3.802 16 N -0.514 5.514 17 C -0.060 4.060 18 C -0.047 4.047 19 N -0.418 5.418 20 C 0.007 3.993 21 C -0.149 4.149 22 C -0.155 4.155 23 O -0.384 6.384 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.274 0.726 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.190 0.810 33 H 0.215 0.785 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.952 -10.308 2.625 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.151 3.849 3 C -0.668 4.668 4 H 0.070 0.930 5 C -0.218 4.218 6 N -0.561 5.561 7 Si 0.930 3.070 8 H -0.196 1.196 9 H -0.194 1.194 10 H -0.217 1.217 11 C -0.165 4.165 12 C -0.160 4.160 13 C 0.109 3.891 14 H 0.079 0.921 15 C -0.064 4.064 16 N -0.233 5.233 17 C -0.208 4.208 18 C -0.180 4.180 19 N -0.100 5.100 20 C -0.097 4.097 21 C -0.186 4.186 22 C -0.192 4.192 23 O -0.303 6.303 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.207 0.793 33 H 0.232 0.768 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.143 -8.836 1.708 15.929 hybrid contribution 0.299 -1.295 0.571 1.446 sum 13.442 -10.131 2.279 16.986 Atomic orbital electron populations 1.21789 0.96835 0.98877 1.00739 1.20060 0.91479 0.90825 0.82524 1.22574 1.40506 0.97596 1.06132 0.93013 1.27073 0.94056 1.08836 0.91880 1.70739 1.37879 1.19100 1.28372 0.83099 0.77012 0.70818 0.76109 1.19645 1.19371 1.21680 1.22881 0.99390 0.96254 0.98017 1.22924 1.00700 0.98291 0.94107 1.20857 0.90168 0.87518 0.90565 0.92137 1.22878 0.81057 0.99840 1.02633 1.70211 1.33295 1.06597 1.13245 1.22844 0.91726 1.02255 1.03999 1.23127 1.00060 0.93571 1.01231 1.44905 1.06702 1.23698 1.34705 1.22343 0.78984 0.97678 1.10676 1.23540 0.95274 1.04334 0.95461 1.23546 0.98227 1.00856 0.96604 1.89044 1.37676 1.66949 1.36628 0.95144 0.94465 0.91768 0.91366 0.90925 0.90904 0.88716 0.91501 0.79289 0.76837 0.85307 0.86673 0.85223 0.85293 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.29 8.35 71.98 0.60 -5.69 16 2 C 0.19 9.76 0.70 -11.17 -0.01 9.75 16 3 C -0.63 -35.31 8.14 25.60 0.21 -35.10 16 4 H 0.05 2.80 7.35 -2.91 -0.02 2.78 16 5 C -0.02 -0.93 5.20 84.65 0.44 -0.49 16 6 N -0.92 -58.93 12.91 21.45 0.28 -58.66 16 7 Si 1.11 50.73 29.91 68.60 2.05 52.78 16 8 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 C -0.13 -5.32 6.26 31.59 0.20 -5.12 16 12 C -0.12 -4.65 6.57 31.90 0.21 -4.44 16 13 C 0.17 7.58 3.61 30.53 0.11 7.69 16 14 H 0.06 2.75 6.99 -2.39 -0.02 2.73 16 15 C 0.20 8.25 6.89 138.13 0.95 9.20 16 16 N -0.51 -22.52 11.23 -188.13 -2.11 -24.63 16 17 C -0.06 -2.02 11.87 83.52 0.99 -1.02 16 18 C -0.05 -1.29 10.86 83.09 0.90 -0.38 16 19 N -0.42 -13.36 3.08 -491.89 -1.52 -14.88 16 20 C 0.01 0.16 6.55 44.99 0.29 0.46 16 21 C -0.15 -2.21 9.99 30.59 0.31 -1.90 16 22 C -0.15 -2.40 10.40 30.59 0.32 -2.08 16 23 O -0.38 -21.19 8.66 -148.98 -1.29 -22.48 16 24 H 0.03 1.69 6.17 -2.39 -0.01 1.67 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.27 18.14 4.88 -92.71 -0.45 17.69 16 28 H 0.07 2.91 7.40 -2.39 -0.02 2.89 16 29 H 0.07 2.76 7.70 -2.39 -0.02 2.74 16 30 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 32 H 0.19 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.22 3.61 7.13 -2.91 -0.02 3.59 16 34 H 0.13 3.45 7.19 -2.39 -0.02 3.43 16 35 H 0.12 1.45 6.90 -2.39 -0.02 1.43 16 36 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.97 309.18 4.30 -72.67 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.37 Total: 24.34 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 5.52 Total: -29.15 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.35 Total: -98.16 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.29 Total: -22.48 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -76.97 4.30 -72.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711749812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.174 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds