Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.86613 * 2 1 4 4 H 1.07995 * 120.00166 * 238.98915 * 3 2 1 5 5 C 1.37881 * 120.00199 * 58.99275 * 3 2 1 6 6 N 1.31511 * 119.99788 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00080 * 179.97438 * 5 3 2 8 8 H 1.48507 * 109.46825 * 60.00254 * 7 5 3 9 9 H 1.48498 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47522 * 300.00338 * 7 5 3 11 11 C 1.54095 * 109.87987 * 238.99453 * 2 1 3 12 12 C 1.54810 * 104.18585 * 238.54473 * 11 2 1 13 13 C 1.54997 * 102.09385 * 339.12042 * 12 11 2 14 14 H 1.09001 * 110.61857 * 278.36418 * 13 12 11 15 15 C 1.50696 * 110.61889 * 155.52535 * 13 12 11 16 16 N 1.30498 * 125.65039 * 287.20096 * 15 13 12 17 17 C 1.34129 * 109.25671 * 179.73373 * 16 15 13 18 18 C 1.34666 * 108.02165 * 0.40230 * 17 16 15 19 19 N 1.35047 * 125.65399 * 107.17633 * 15 13 12 20 20 C 1.46507 * 126.39328 * 0.02641 * 19 15 13 21 21 C 1.52998 * 117.49544 * 188.76872 * 20 19 15 22 22 C 1.52992 * 117.50058 * 120.10942 * 20 19 15 23 23 O 1.43885 * 109.94686 * 121.02000 * 2 1 3 24 24 H 1.08999 * 109.46955 * 181.00350 * 1 2 3 25 25 H 1.08997 * 109.47216 * 301.00520 * 1 2 3 26 26 H 1.09003 * 109.47224 * 61.01211 * 1 2 3 27 27 H 0.97001 * 119.99953 * 179.97438 * 6 5 3 28 28 H 1.09000 * 110.49173 * 119.87249 * 11 2 1 29 29 H 1.09002 * 110.60291 * 357.27328 * 11 2 1 30 30 H 1.09005 * 110.90602 * 220.91952 * 12 11 2 31 31 H 1.08998 * 110.93688 * 97.33345 * 12 11 2 32 32 H 1.08003 * 125.99108 * 180.25065 * 17 16 15 33 33 H 1.08002 * 126.59556 * 179.87817 * 18 17 16 34 34 H 1.09006 * 115.54616 * 334.43234 * 20 19 15 35 35 H 1.08994 * 117.49943 * 359.97438 * 21 20 19 36 36 H 1.09004 * 117.49641 * 145.01536 * 21 20 19 37 37 H 1.08997 * 117.49655 * 214.97724 * 22 20 19 38 38 H 1.09001 * 117.50041 * 359.97289 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 1 2.6788 1.7614 -0.8016 5 6 1.6979 2.2747 1.0234 6 7 0.9223 1.8558 1.9993 7 14 2.3333 4.0313 1.0238 8 1 1.8637 4.7277 -0.2010 9 1 1.8236 4.7418 2.2240 10 1 3.8180 4.0208 1.0487 11 6 2.0540 -0.7465 -1.2421 12 6 2.9196 -1.8905 -0.6601 13 6 3.2379 -1.3651 0.7630 14 1 4.0703 -0.6619 0.7352 15 6 3.5429 -2.5092 1.6952 16 7 2.6705 -3.3534 2.1740 17 6 3.2981 -4.2386 2.9624 18 6 4.6078 -3.9260 2.9795 19 7 4.7642 -2.8311 2.1731 20 6 6.0217 -2.1378 1.8827 21 6 7.3174 -2.7927 2.3657 22 6 6.7870 -1.5381 3.0640 23 8 2.0209 -0.6970 1.1591 24 1 -0.3633 -1.0275 0.0180 25 1 -0.3633 0.5293 0.8808 26 1 -0.3634 0.4980 -0.8989 27 1 0.6804 2.4589 2.7195 28 1 2.6620 -0.0834 -1.8575 29 1 1.2260 -1.1524 -1.8233 30 1 3.8333 -2.0207 -1.2401 31 1 2.3546 -2.8214 -0.6137 32 1 2.8340 -5.0571 3.4926 33 1 5.3861 -4.4427 3.5215 34 1 6.0531 -1.5978 0.9363 35 1 7.2341 -3.7391 2.8998 36 1 8.2013 -2.6832 1.7373 37 1 7.3221 -0.6037 2.8948 38 1 6.3546 -1.6590 4.0573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711749813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = 51.490277 kcal Electronic energy + Delta-G solvation = -20347.017528 eV Core-core repulsion = 17384.888253 eV Total energy + Delta-G solvation = -2962.129275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78674 -38.18643 -37.24180 -32.99190 -31.56177 -30.91474 -30.62817 -28.41264 -25.20123 -24.69703 -23.22878 -22.71243 -21.53981 -20.39079 -19.32627 -19.04471 -17.30027 -16.43976 -15.44023 -15.23629 -14.65277 -14.56186 -14.25714 -13.72822 -13.50625 -13.23290 -12.65246 -12.56049 -12.23974 -11.80695 -11.45154 -11.33471 -11.09602 -10.96396 -10.89403 -10.83993 -10.60357 -10.53278 -10.31813 -9.83906 -9.45919 -9.38659 -9.13937 -9.05079 -8.45445 -8.04995 -7.82325 -5.90138 -4.09385 2.26609 2.87361 3.30957 3.37045 3.37957 3.54255 3.63680 4.37287 4.43113 4.61019 4.64831 4.82711 5.01088 5.23696 5.33164 5.48284 5.52954 5.58986 5.67229 5.69392 5.82545 5.87286 5.96122 6.26194 6.27437 6.38247 6.62345 6.70718 6.75877 6.89831 7.06349 7.13225 7.19372 7.50371 7.52565 7.81510 8.10919 8.39203 8.57344 8.66846 9.00559 9.62670 11.10315 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.007018 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.992499 B = 3989.059534 C = 4640.558222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.224 3.776 3 C -0.546 4.546 4 H 0.056 0.944 5 C 0.082 3.918 6 N -0.856 5.856 7 Si 0.885 3.115 8 H -0.276 1.276 9 H -0.287 1.287 10 H -0.278 1.278 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.165 3.835 14 H 0.069 0.931 15 C 0.240 3.760 16 N -0.468 5.468 17 C -0.030 4.030 18 C -0.075 4.075 19 N -0.428 5.428 20 C 0.058 3.942 21 C -0.174 4.174 22 C -0.176 4.176 23 O -0.330 6.330 24 H 0.017 0.983 25 H 0.090 0.910 26 H 0.038 0.962 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -8.743 -0.357 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.186 3.814 3 C -0.584 4.584 4 H 0.074 0.926 5 C -0.124 4.124 6 N -0.492 5.492 7 Si 0.713 3.287 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.204 1.204 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.104 3.896 14 H 0.086 0.914 15 C -0.022 4.022 16 N -0.186 5.186 17 C -0.179 4.179 18 C -0.207 4.207 19 N -0.111 5.111 20 C -0.047 4.047 21 C -0.212 4.212 22 C -0.214 4.214 23 O -0.248 6.248 24 H 0.036 0.964 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.371 -8.613 -0.158 13.482 hybrid contribution 1.452 0.920 0.218 1.733 sum 11.823 -7.693 0.060 14.105 Atomic orbital electron populations 1.21759 0.96133 0.98183 1.02589 1.19697 0.91883 0.89892 0.79887 1.21409 1.32658 0.95499 1.08834 0.92555 1.25006 0.94237 0.97916 0.95217 1.69959 1.33835 1.35038 1.10328 0.86797 0.79261 0.85197 0.77453 1.20176 1.21245 1.20357 1.23076 0.98597 0.96054 1.00089 1.23061 0.99688 0.99647 0.95433 1.20820 0.93009 0.87233 0.88581 0.91372 1.23362 0.79279 0.99130 1.00457 1.70354 1.30997 1.04797 1.12411 1.22301 0.90711 1.01598 1.03275 1.22402 0.99782 0.94778 1.03761 1.44783 1.07082 1.23324 1.35941 1.21988 0.81198 1.01297 1.00218 1.23373 0.96072 0.97978 1.03783 1.23461 1.02531 0.97893 0.97535 1.89209 1.34816 1.65630 1.35112 0.96362 0.89156 0.94347 0.92987 0.91672 0.92424 0.92189 0.91054 0.81709 0.81612 0.83922 0.88003 0.87221 0.87119 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.45 37.16 0.31 -2.96 16 2 C 0.22 5.72 0.75 -91.20 -0.07 5.65 16 3 C -0.55 -14.90 8.19 -34.44 -0.28 -15.18 16 4 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 5 C 0.08 2.28 5.26 -17.82 -0.09 2.18 16 6 N -0.86 -25.01 10.92 55.43 0.61 -24.40 16 7 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 C -0.14 -2.97 6.26 -25.21 -0.16 -3.13 16 12 C -0.14 -2.71 6.58 -24.72 -0.16 -2.87 16 13 C 0.16 3.61 3.60 -26.83 -0.10 3.51 16 14 H 0.07 1.47 7.21 -51.93 -0.37 1.09 16 15 C 0.24 4.95 6.88 -155.42 -1.07 3.88 16 16 N -0.47 -10.12 11.25 -10.82 -0.12 -10.24 16 17 C -0.03 -0.52 11.87 -17.81 -0.21 -0.73 16 18 C -0.08 -1.13 10.87 -16.56 -0.18 -1.31 16 19 N -0.43 -7.08 3.08 -106.83 -0.33 -7.41 16 20 C 0.06 0.74 6.38 -67.93 -0.43 0.31 16 21 C -0.17 -1.59 9.99 -26.70 -0.27 -1.86 16 22 C -0.18 -1.93 10.41 -26.70 -0.28 -2.20 16 23 O -0.33 -8.88 10.09 -35.23 -0.36 -9.24 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 2.54 6.00 -51.93 -0.31 2.22 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.06 1.32 7.39 -51.93 -0.38 0.94 16 29 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 32 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.17 1.81 7.13 -52.49 -0.37 1.43 16 34 H 0.14 1.74 7.56 -51.93 -0.39 1.35 16 35 H 0.10 0.86 6.89 -51.93 -0.36 0.51 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -32.85 312.16 -8.99 -41.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.49 Total: 3.38 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.98 Total: -14.70 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.15 Total: -42.06 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.36 Total: -9.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.85 -8.99 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711749813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.330 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds