Wall clock time and date at job start Mon Mar 30 2020 06:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.86613 * 2 1 4 4 H 1.07995 * 120.00166 * 238.98915 * 3 2 1 5 5 C 1.37881 * 120.00199 * 58.99275 * 3 2 1 6 6 N 1.31511 * 119.99788 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00080 * 179.97438 * 5 3 2 8 8 H 1.48507 * 109.46825 * 60.00254 * 7 5 3 9 9 H 1.48498 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47522 * 300.00338 * 7 5 3 11 11 C 1.54095 * 109.87987 * 238.99453 * 2 1 3 12 12 C 1.54810 * 104.18585 * 238.54473 * 11 2 1 13 13 C 1.54997 * 102.09385 * 339.12042 * 12 11 2 14 14 H 1.09001 * 110.61857 * 278.36418 * 13 12 11 15 15 C 1.50696 * 110.61889 * 155.52535 * 13 12 11 16 16 N 1.30498 * 125.65039 * 287.20096 * 15 13 12 17 17 C 1.34129 * 109.25671 * 179.73373 * 16 15 13 18 18 C 1.34666 * 108.02165 * 0.40230 * 17 16 15 19 19 N 1.35047 * 125.65399 * 107.17633 * 15 13 12 20 20 C 1.46507 * 126.39328 * 0.02641 * 19 15 13 21 21 C 1.52998 * 117.49544 * 188.76872 * 20 19 15 22 22 C 1.52992 * 117.50058 * 120.10942 * 20 19 15 23 23 O 1.43885 * 109.94686 * 121.02000 * 2 1 3 24 24 H 1.08999 * 109.46955 * 181.00350 * 1 2 3 25 25 H 1.08997 * 109.47216 * 301.00520 * 1 2 3 26 26 H 1.09003 * 109.47224 * 61.01211 * 1 2 3 27 27 H 0.97001 * 119.99953 * 179.97438 * 6 5 3 28 28 H 1.09000 * 110.49173 * 119.87249 * 11 2 1 29 29 H 1.09002 * 110.60291 * 357.27328 * 11 2 1 30 30 H 1.09005 * 110.90602 * 220.91952 * 12 11 2 31 31 H 1.08998 * 110.93688 * 97.33345 * 12 11 2 32 32 H 1.08003 * 125.99108 * 180.25065 * 17 16 15 33 33 H 1.08002 * 126.59556 * 179.87817 * 18 17 16 34 34 H 1.09006 * 115.54616 * 334.43234 * 20 19 15 35 35 H 1.08994 * 117.49943 * 359.97438 * 21 20 19 36 36 H 1.09004 * 117.49641 * 145.01536 * 21 20 19 37 37 H 1.08997 * 117.49655 * 214.97724 * 22 20 19 38 38 H 1.09001 * 117.50041 * 359.97289 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 1 2.6788 1.7614 -0.8016 5 6 1.6979 2.2747 1.0234 6 7 0.9223 1.8558 1.9993 7 14 2.3333 4.0313 1.0238 8 1 1.8637 4.7277 -0.2010 9 1 1.8236 4.7418 2.2240 10 1 3.8180 4.0208 1.0487 11 6 2.0540 -0.7465 -1.2421 12 6 2.9196 -1.8905 -0.6601 13 6 3.2379 -1.3651 0.7630 14 1 4.0703 -0.6619 0.7352 15 6 3.5429 -2.5092 1.6952 16 7 2.6705 -3.3534 2.1740 17 6 3.2981 -4.2386 2.9624 18 6 4.6078 -3.9260 2.9795 19 7 4.7642 -2.8311 2.1731 20 6 6.0217 -2.1378 1.8827 21 6 7.3174 -2.7927 2.3657 22 6 6.7870 -1.5381 3.0640 23 8 2.0209 -0.6970 1.1591 24 1 -0.3633 -1.0275 0.0180 25 1 -0.3633 0.5293 0.8808 26 1 -0.3634 0.4980 -0.8989 27 1 0.6804 2.4589 2.7195 28 1 2.6620 -0.0834 -1.8575 29 1 1.2260 -1.1524 -1.8233 30 1 3.8333 -2.0207 -1.2401 31 1 2.3546 -2.8214 -0.6137 32 1 2.8340 -5.0571 3.4926 33 1 5.3861 -4.4427 3.5215 34 1 6.0531 -1.5978 0.9363 35 1 7.2341 -3.7391 2.8998 36 1 8.2013 -2.6832 1.7373 37 1 7.3221 -0.6037 2.8948 38 1 6.3546 -1.6590 4.0573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711749813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:46 Heat of formation + Delta-G solvation = 31.638556 kcal Electronic energy + Delta-G solvation = -20347.878363 eV Core-core repulsion = 17384.888253 eV Total energy + Delta-G solvation = -2962.990110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.08285 -39.98329 -38.18967 -34.98483 -32.83756 -32.72287 -32.34493 -29.97644 -27.29413 -26.36897 -24.32743 -23.53313 -23.13501 -21.66786 -21.21243 -20.36933 -18.52231 -18.42086 -16.97692 -16.54299 -16.37687 -15.88785 -15.72215 -15.28953 -15.03230 -14.52938 -14.30287 -14.06564 -13.64358 -13.36542 -13.03212 -12.86650 -12.74839 -12.53764 -12.41883 -12.36716 -12.23531 -12.17755 -11.74359 -11.69565 -11.22957 -11.03370 -10.77926 -10.55768 -10.26173 -9.89251 -9.24935 -7.98793 -6.25161 1.00701 1.41608 1.42924 1.50589 1.72279 2.20418 2.43826 2.72486 3.13881 3.38064 3.53713 3.67587 3.79021 3.87402 3.89207 4.04856 4.20692 4.43344 4.53149 4.59173 4.65153 4.69350 4.73135 4.82318 4.91633 4.94057 5.03008 5.08056 5.10104 5.17160 5.31360 5.40083 5.53797 5.69249 5.89725 6.06263 6.24369 6.32625 6.68724 6.98820 7.27598 7.51553 9.00618 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.007018 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.992499 B = 3989.059534 C = 4640.558222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.208 3.792 3 C -0.556 4.556 4 H 0.061 0.939 5 C 0.030 3.970 6 N -0.892 5.892 7 Si 0.949 3.051 8 H -0.266 1.266 9 H -0.289 1.289 10 H -0.270 1.270 11 C -0.135 4.135 12 C -0.125 4.125 13 C 0.162 3.838 14 H 0.063 0.937 15 C 0.202 3.798 16 N -0.515 5.515 17 C -0.061 4.061 18 C -0.048 4.048 19 N -0.421 5.421 20 C 0.015 3.985 21 C -0.134 4.134 22 C -0.180 4.180 23 O -0.370 6.370 24 H 0.022 0.978 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.256 0.744 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.189 0.811 33 H 0.214 0.786 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 -9.477 -0.810 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.170 3.830 3 C -0.594 4.594 4 H 0.079 0.921 5 C -0.172 4.172 6 N -0.529 5.529 7 Si 0.774 3.226 8 H -0.191 1.191 9 H -0.215 1.215 10 H -0.195 1.195 11 C -0.172 4.172 12 C -0.163 4.163 13 C 0.102 3.898 14 H 0.081 0.919 15 C -0.060 4.060 16 N -0.234 5.234 17 C -0.209 4.209 18 C -0.181 4.181 19 N -0.103 5.103 20 C -0.089 4.089 21 C -0.172 4.172 22 C -0.218 4.218 23 O -0.289 6.289 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.206 0.794 33 H 0.230 0.770 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.322 -9.336 -0.638 16.281 hybrid contribution 0.599 1.080 0.416 1.303 sum 13.921 -8.256 -0.222 16.187 Atomic orbital electron populations 1.21680 0.96917 0.98009 1.01544 1.19833 0.91629 0.89970 0.81548 1.21784 1.32234 0.96680 1.08703 0.92133 1.25795 0.94485 1.01960 0.94933 1.70147 1.35438 1.36270 1.11064 0.85778 0.78902 0.80361 0.77512 1.19114 1.21506 1.19518 1.22978 0.99384 0.96408 0.98472 1.22965 1.00668 0.98349 0.94350 1.20873 0.91018 0.87574 0.90373 0.91887 1.22970 0.81054 0.99600 1.02374 1.70219 1.33072 1.06237 1.13890 1.22827 0.91964 1.02228 1.03878 1.23095 1.00074 0.93268 1.01687 1.44935 1.07144 1.23294 1.34896 1.22392 0.81292 1.03862 1.01311 1.23543 0.94245 0.97380 1.01996 1.23528 1.02259 0.99836 0.96153 1.89133 1.37032 1.66369 1.36337 0.95899 0.92361 0.93186 0.93476 0.90756 0.91208 0.88774 0.91752 0.79435 0.76978 0.83992 0.86606 0.84438 0.85963 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.47 8.45 71.98 0.61 -5.86 16 2 C 0.21 10.80 0.75 -11.17 -0.01 10.79 16 3 C -0.56 -30.62 8.19 25.60 0.21 -30.41 16 4 H 0.06 3.18 7.33 -2.91 -0.02 3.16 16 5 C 0.03 1.71 5.26 84.66 0.45 2.15 16 6 N -0.89 -53.94 10.92 21.45 0.23 -53.71 16 7 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 8 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C -0.13 -5.62 6.26 31.58 0.20 -5.42 16 12 C -0.12 -4.77 6.58 31.90 0.21 -4.56 16 13 C 0.16 7.20 3.60 30.53 0.11 7.31 16 14 H 0.06 2.77 7.21 -2.39 -0.02 2.75 16 15 C 0.20 8.39 6.88 138.13 0.95 9.34 16 16 N -0.52 -22.64 11.25 -188.13 -2.12 -24.76 16 17 C -0.06 -2.05 11.87 83.52 0.99 -1.06 16 18 C -0.05 -1.33 10.87 83.09 0.90 -0.42 16 19 N -0.42 -13.34 3.08 -491.91 -1.52 -14.86 16 20 C 0.01 0.35 6.38 44.99 0.29 0.64 16 21 C -0.13 -1.87 9.99 30.62 0.31 -1.57 16 22 C -0.18 -3.47 10.41 30.61 0.32 -3.16 16 23 O -0.37 -20.59 10.09 -148.98 -1.50 -22.10 16 24 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 3.41 6.00 -2.39 -0.01 3.40 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.07 2.92 7.39 -2.39 -0.02 2.90 16 29 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 30 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 32 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.21 3.61 7.13 -2.91 -0.02 3.59 16 34 H 0.14 3.28 7.56 -2.38 -0.02 3.26 16 35 H 0.12 1.33 6.89 -2.39 -0.02 1.32 16 36 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -74.33 312.16 3.70 -70.63 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.05 Total: 21.28 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 5.53 Total: -22.21 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.40 Total: -93.32 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.50 Total: -22.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.33 3.70 -70.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711749813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.268 kcal (2) G-P(sol) polarization free energy of solvation -74.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds