Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47376 * 270.00326 * 3 2 1 5 5 H 1.48506 * 109.47230 * 30.00715 * 3 2 1 6 6 H 1.48501 * 109.46837 * 150.00251 * 3 2 1 7 7 C 1.37881 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99804 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.48641 * 299.96639 * 9 7 2 11 11 C 1.53097 * 109.47887 * 179.97438 * 9 7 2 12 12 C 1.53180 * 109.21119 * 182.44084 * 11 9 7 13 13 C 1.53177 * 109.03525 * 56.88485 * 12 11 9 14 14 C 1.53098 * 109.21356 * 303.11207 * 13 12 11 15 15 H 1.08999 * 109.48099 * 297.59428 * 14 13 12 16 16 C 1.50700 * 109.47718 * 177.56941 * 14 13 12 17 17 N 1.30502 * 125.64926 * 284.69075 * 16 14 13 18 18 C 1.34127 * 109.25433 * 179.89531 * 17 16 14 19 19 C 1.34670 * 108.02064 * 0.37253 * 18 17 16 20 20 N 1.35042 * 125.64961 * 105.00501 * 16 14 13 21 21 C 1.46496 * 126.39571 * 359.93459 * 20 16 14 22 22 C 1.52997 * 117.49904 * 188.74939 * 21 20 16 23 23 C 1.53004 * 117.49798 * 120.09155 * 21 20 16 24 24 O 1.42898 * 109.48385 * 59.99897 * 9 7 2 25 25 H 0.96999 * 120.00521 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.52051 * 302.31298 * 11 9 7 27 27 H 1.09005 * 109.52063 * 62.43512 * 11 9 7 28 28 H 1.09005 * 109.49724 * 297.04659 * 12 11 9 29 29 H 1.09005 * 109.59319 * 176.78366 * 12 11 9 30 30 H 1.09002 * 109.52487 * 183.17418 * 13 12 11 31 31 H 1.09004 * 109.52023 * 63.05037 * 13 12 11 32 32 H 1.07998 * 125.99121 * 180.11028 * 18 17 16 33 33 H 1.08002 * 126.59305 * 179.74072 * 19 18 17 34 34 H 1.09004 * 115.55167 * 334.42154 * 21 20 16 35 35 H 1.09002 * 117.50259 * 0.02562 * 22 21 20 36 36 H 1.09004 * 117.50302 * 145.02392 * 22 21 20 37 37 H 1.09004 * 117.50005 * 214.97915 * 23 21 20 38 38 H 1.09003 * 117.49580 * 359.97398 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8748 -0.6806 -0.8913 11 6 4.0221 -2.6373 -0.0010 12 6 5.5527 -2.6305 0.0600 13 6 5.9997 -1.8543 1.3026 14 6 5.4127 -0.4412 1.2520 15 1 5.8009 0.0826 0.3785 16 6 5.7996 0.3086 2.5007 17 7 5.2786 0.1345 3.6845 18 6 5.8662 0.9703 4.5536 19 6 6.7805 1.6953 3.8812 20 7 6.7386 1.2759 2.5789 21 6 7.5595 1.7816 1.4759 22 6 8.7035 2.7352 1.8263 23 6 7.4462 3.2689 1.1351 24 8 3.9886 -0.5207 1.1655 25 1 -0.4851 0.8400 0.0004 26 1 3.6262 -3.1636 0.8675 27 1 3.6950 -3.1395 -0.9115 28 1 5.9503 -2.1489 -0.8334 29 1 5.9208 -3.6549 0.1180 30 1 7.0880 -1.7961 1.3238 31 1 5.6447 -2.3645 2.1980 32 1 5.6422 1.0510 5.6070 33 1 7.4228 2.4609 4.2906 34 1 7.7182 1.0869 0.6511 35 1 8.8456 2.9861 2.8775 36 1 9.6146 2.6683 1.2317 37 1 7.5307 3.5527 0.0861 38 1 6.7605 3.8710 1.7313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711755230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = 47.065191 kcal Electronic energy + Delta-G solvation = -20428.150516 eV Core-core repulsion = 17465.829355 eV Total energy + Delta-G solvation = -2962.321161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.94807 -38.38595 -37.38891 -33.03177 -32.70689 -31.71039 -31.22509 -28.61767 -25.90590 -23.98266 -23.31204 -22.84282 -21.71452 -20.76927 -19.45987 -19.22917 -17.54393 -16.73745 -15.64039 -15.27150 -15.12775 -14.89131 -14.34951 -14.07793 -13.76989 -13.53248 -13.27545 -12.84305 -12.73443 -12.29332 -12.11194 -11.93724 -11.37418 -11.12905 -11.06845 -10.97820 -10.61549 -10.51794 -10.12631 -9.97613 -9.60968 -9.52993 -9.20379 -9.09316 -8.53202 -8.29814 -7.95688 -6.08032 -4.15221 2.12046 2.70845 3.38801 3.40885 3.45546 3.51604 3.71244 4.21597 4.44094 4.46225 4.56602 4.59679 4.84726 5.02940 5.20911 5.30392 5.35124 5.39607 5.47487 5.51809 5.59536 5.67634 5.69742 5.79909 5.90157 5.94978 6.15699 6.31426 6.49189 6.50604 6.59393 6.67150 6.74935 7.00440 7.23135 7.36717 7.66112 8.41309 8.47167 8.58931 8.95617 9.56469 11.02275 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.007877 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.597473 B = 3553.623669 C = 4049.489889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.086 3.914 3 Si 0.874 3.126 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.227 1.227 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.183 3.817 10 H 0.012 0.988 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.135 4.135 14 C 0.170 3.830 15 H 0.051 0.949 16 C 0.236 3.764 17 N -0.462 5.462 18 C -0.028 4.028 19 C -0.072 4.072 20 N -0.430 5.430 21 C 0.054 3.946 22 C -0.171 4.171 23 C -0.178 4.178 24 O -0.353 6.353 25 H 0.265 0.735 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.413 4.498 2.319 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.701 3.299 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.150 1.150 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.128 3.872 10 H 0.029 0.971 11 C -0.173 4.173 12 C -0.158 4.158 13 C -0.174 4.174 14 C 0.109 3.891 15 H 0.069 0.931 16 C -0.026 4.026 17 N -0.180 5.180 18 C -0.177 4.177 19 C -0.204 4.204 20 N -0.113 5.113 21 C -0.050 4.050 22 C -0.209 4.209 23 C -0.216 4.216 24 O -0.272 6.272 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.185 0.815 33 H 0.186 0.814 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.570 4.147 2.562 19.199 hybrid contribution 1.091 1.548 -0.216 1.907 sum 19.661 5.695 2.346 20.603 Atomic orbital electron populations 1.69920 1.06668 1.27443 1.48561 1.25035 0.94642 0.99831 0.92409 0.86992 0.83035 0.82322 0.77550 1.21521 1.22007 1.14986 1.20912 0.87219 0.94882 1.51735 0.90077 1.20250 0.95181 0.87865 0.83918 0.97068 1.22077 0.92880 1.00175 1.02143 1.21651 0.97987 0.99388 0.96800 1.22092 0.99103 0.96081 1.00143 1.19833 0.88034 0.92552 0.88697 0.93101 1.23107 0.90716 0.92483 0.96317 1.70368 1.24497 1.24008 0.99079 1.22340 0.97715 0.97757 0.99863 1.22436 1.07385 1.06518 0.84032 1.44784 1.29793 1.29284 1.07421 1.21986 0.97567 0.93443 0.92047 1.23371 0.93189 1.01693 1.02635 1.23492 1.00193 0.95164 1.02772 1.88611 1.13826 1.77489 1.47280 0.92519 0.91553 0.91733 0.92617 0.92232 0.92610 0.90349 0.81500 0.81436 0.84074 0.87868 0.87123 0.87091 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 3 Si 0.87 22.85 26.99 -169.99 -4.59 18.26 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.23 -5.84 5.16 56.52 0.29 -5.55 16 7 C -0.51 -14.87 9.38 -34.44 -0.32 -15.20 16 8 H 0.08 2.51 7.99 -52.48 -0.42 2.09 16 9 C 0.18 4.46 1.99 -27.83 -0.06 4.41 16 10 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 11 C -0.13 -2.74 5.36 -26.59 -0.14 -2.88 16 12 C -0.12 -1.96 6.03 -26.55 -0.16 -2.12 16 13 C -0.14 -2.30 5.40 -26.59 -0.14 -2.45 16 14 C 0.17 3.35 2.82 -27.83 -0.08 3.27 16 15 H 0.05 0.93 7.11 -51.93 -0.37 0.56 16 16 C 0.24 4.60 6.79 -155.41 -1.06 3.54 16 17 N -0.46 -9.70 11.25 -10.82 -0.12 -9.82 16 18 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 19 C -0.07 -1.02 10.87 -16.56 -0.18 -1.20 16 20 N -0.43 -6.69 3.08 -106.83 -0.33 -7.02 16 21 C 0.05 0.63 6.35 -67.93 -0.43 0.20 16 22 C -0.17 -1.39 9.99 -26.70 -0.27 -1.65 16 23 C -0.18 -1.76 10.41 -26.69 -0.28 -2.04 16 24 O -0.35 -8.72 6.92 -35.23 -0.24 -8.97 16 25 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.17 1.71 7.13 -52.49 -0.37 1.33 16 34 H 0.14 1.48 7.52 -51.93 -0.39 1.09 16 35 H 0.10 0.78 6.90 -51.93 -0.36 0.43 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -34.93 308.14 -9.07 -44.00 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.78 Total: 0.40 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.42 Total: -14.33 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.32 Total: -44.00 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.24 Total: -8.97 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.59 Total: 18.26 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.93 -9.07 -44.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711755230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.065 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds