Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47376 * 270.00326 * 3 2 1 5 5 H 1.48506 * 109.47230 * 30.00715 * 3 2 1 6 6 H 1.48501 * 109.46837 * 150.00251 * 3 2 1 7 7 C 1.37881 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99804 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.48641 * 299.96639 * 9 7 2 11 11 C 1.53097 * 109.47887 * 179.97438 * 9 7 2 12 12 C 1.53180 * 109.21119 * 182.44084 * 11 9 7 13 13 C 1.53177 * 109.03525 * 56.88485 * 12 11 9 14 14 C 1.53098 * 109.21356 * 303.11207 * 13 12 11 15 15 H 1.08999 * 109.48099 * 297.59428 * 14 13 12 16 16 C 1.50700 * 109.47718 * 177.56941 * 14 13 12 17 17 N 1.30502 * 125.64926 * 284.69075 * 16 14 13 18 18 C 1.34127 * 109.25433 * 179.89531 * 17 16 14 19 19 C 1.34670 * 108.02064 * 0.37253 * 18 17 16 20 20 N 1.35042 * 125.64961 * 105.00501 * 16 14 13 21 21 C 1.46496 * 126.39571 * 359.93459 * 20 16 14 22 22 C 1.52997 * 117.49904 * 188.74939 * 21 20 16 23 23 C 1.53004 * 117.49798 * 120.09155 * 21 20 16 24 24 O 1.42898 * 109.48385 * 59.99897 * 9 7 2 25 25 H 0.96999 * 120.00521 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.52051 * 302.31298 * 11 9 7 27 27 H 1.09005 * 109.52063 * 62.43512 * 11 9 7 28 28 H 1.09005 * 109.49724 * 297.04659 * 12 11 9 29 29 H 1.09005 * 109.59319 * 176.78366 * 12 11 9 30 30 H 1.09002 * 109.52487 * 183.17418 * 13 12 11 31 31 H 1.09004 * 109.52023 * 63.05037 * 13 12 11 32 32 H 1.07998 * 125.99121 * 180.11028 * 18 17 16 33 33 H 1.08002 * 126.59305 * 179.74072 * 19 18 17 34 34 H 1.09004 * 115.55167 * 334.42154 * 21 20 16 35 35 H 1.09002 * 117.50259 * 0.02562 * 22 21 20 36 36 H 1.09004 * 117.50302 * 145.02392 * 22 21 20 37 37 H 1.09004 * 117.50005 * 214.97915 * 23 21 20 38 38 H 1.09003 * 117.49580 * 359.97398 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8748 -0.6806 -0.8913 11 6 4.0221 -2.6373 -0.0010 12 6 5.5527 -2.6305 0.0600 13 6 5.9997 -1.8543 1.3026 14 6 5.4127 -0.4412 1.2520 15 1 5.8009 0.0826 0.3785 16 6 5.7996 0.3086 2.5007 17 7 5.2786 0.1345 3.6845 18 6 5.8662 0.9703 4.5536 19 6 6.7805 1.6953 3.8812 20 7 6.7386 1.2759 2.5789 21 6 7.5595 1.7816 1.4759 22 6 8.7035 2.7352 1.8263 23 6 7.4462 3.2689 1.1351 24 8 3.9886 -0.5207 1.1655 25 1 -0.4851 0.8400 0.0004 26 1 3.6262 -3.1636 0.8675 27 1 3.6950 -3.1395 -0.9115 28 1 5.9503 -2.1489 -0.8334 29 1 5.9208 -3.6549 0.1180 30 1 7.0880 -1.7961 1.3238 31 1 5.6447 -2.3645 2.1980 32 1 5.6422 1.0510 5.6070 33 1 7.4228 2.4609 4.2906 34 1 7.7182 1.0869 0.6511 35 1 8.8456 2.9861 2.8775 36 1 9.6146 2.6683 1.2317 37 1 7.5307 3.5527 0.0861 38 1 6.7605 3.8710 1.7313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711755230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = 24.498250 kcal Electronic energy + Delta-G solvation = -20429.129092 eV Core-core repulsion = 17465.829355 eV Total energy + Delta-G solvation = -2963.299737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.14620 -40.03992 -38.21313 -35.03605 -34.35717 -33.07280 -32.74084 -30.09952 -27.72900 -25.46423 -24.34078 -23.54673 -23.41360 -22.00777 -20.90761 -20.51359 -19.04861 -18.48752 -17.04486 -16.96998 -16.34474 -16.06458 -15.89747 -15.45198 -15.31204 -14.79348 -14.72118 -14.50311 -14.14337 -13.68705 -13.59514 -12.96320 -12.83240 -12.55209 -12.44804 -12.29886 -12.08582 -11.91547 -11.75257 -11.68535 -11.51930 -11.02080 -10.80671 -10.75096 -10.29790 -9.95386 -9.28845 -8.38225 -6.49421 0.95218 1.28467 1.35306 1.61350 1.66510 2.16631 2.38946 2.69884 2.85473 3.28414 3.49725 3.58726 3.76405 3.84396 3.92499 4.00706 4.04163 4.17493 4.31138 4.36192 4.52233 4.56024 4.66358 4.69606 4.75420 4.88822 4.91318 4.95527 5.06351 5.07122 5.17908 5.23488 5.34940 5.54597 5.57477 5.84576 6.19810 6.22001 6.53633 6.84677 7.23373 7.27594 8.76029 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.007877 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.597473 B = 3553.623669 C = 4049.489889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.221 1.221 7 C -0.523 4.523 8 H 0.042 0.958 9 C 0.186 3.814 10 H 0.022 0.978 11 C -0.133 4.133 12 C -0.110 4.110 13 C -0.127 4.127 14 C 0.163 3.837 15 H 0.069 0.931 16 C 0.202 3.798 17 N -0.517 5.517 18 C -0.063 4.063 19 C -0.045 4.045 20 N -0.422 5.422 21 C 0.015 3.985 22 C -0.137 4.137 23 C -0.182 4.182 24 O -0.387 6.387 25 H 0.267 0.733 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.185 0.815 33 H 0.213 0.787 34 H 0.151 0.849 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.814 6.151 1.821 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.230 1.230 6 H -0.144 1.144 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.130 3.870 10 H 0.039 0.961 11 C -0.171 4.171 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.104 3.896 15 H 0.087 0.913 16 C -0.061 4.061 17 N -0.236 5.236 18 C -0.210 4.210 19 C -0.178 4.178 20 N -0.104 5.104 21 C -0.088 4.088 22 C -0.174 4.174 23 C -0.220 4.220 24 O -0.307 6.307 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.202 0.798 33 H 0.230 0.770 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 23.005 5.791 2.034 23.810 hybrid contribution -0.230 1.027 0.017 1.053 sum 22.775 6.818 2.050 23.862 Atomic orbital electron populations 1.70055 1.08355 1.28325 1.50986 1.25921 0.95372 1.03590 0.92318 0.85951 0.81534 0.77569 0.78398 1.19310 1.22986 1.14390 1.21254 0.90394 0.93366 1.51001 0.93929 1.20046 0.92258 0.90502 0.84166 0.96059 1.21993 0.96368 0.97293 1.01446 1.21618 0.94252 1.01424 0.97451 1.22026 1.00924 0.94249 0.99369 1.20098 0.85083 0.94537 0.89932 0.91293 1.22892 0.92822 0.94618 0.95741 1.70240 1.26470 1.26168 1.00701 1.22804 0.99008 0.98445 1.00770 1.23075 1.05977 1.05469 0.83244 1.44958 1.28907 1.27836 1.08727 1.22471 0.99766 0.94634 0.91966 1.23535 0.92909 0.97460 1.03481 1.23571 1.01274 0.93283 1.03892 1.88440 1.17640 1.77723 1.46853 0.92431 0.93848 0.91090 0.90208 0.89332 0.89146 0.92775 0.79766 0.77031 0.83152 0.86926 0.84307 0.85521 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.47 13.96 21.45 0.30 -61.17 16 2 C 0.03 1.71 5.47 84.66 0.46 2.17 16 3 Si 0.94 48.31 26.99 68.60 1.85 50.16 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 6 H -0.22 -11.09 5.16 99.48 0.51 -10.58 16 7 C -0.52 -31.72 9.38 25.60 0.24 -31.48 16 8 H 0.04 2.81 7.99 -2.91 -0.02 2.79 16 9 C 0.19 9.10 1.99 29.88 0.06 9.16 16 10 H 0.02 1.01 7.57 -2.39 -0.02 1.00 16 11 C -0.13 -5.38 5.36 30.69 0.16 -5.22 16 12 C -0.11 -3.27 6.03 30.71 0.19 -3.08 16 13 C -0.13 -4.05 5.40 30.69 0.17 -3.89 16 14 C 0.16 6.21 2.82 29.88 0.08 6.30 16 15 H 0.07 2.32 7.11 -2.39 -0.02 2.31 16 16 C 0.20 7.61 6.79 138.13 0.94 8.54 16 17 N -0.52 -21.75 11.25 -188.13 -2.12 -23.86 16 18 C -0.06 -2.02 11.87 83.52 0.99 -1.03 16 19 C -0.04 -1.14 10.87 83.09 0.90 -0.23 16 20 N -0.42 -11.98 3.08 -491.90 -1.52 -13.49 16 21 C 0.01 0.29 6.35 44.99 0.29 0.57 16 22 C -0.14 -1.48 9.99 30.62 0.31 -1.18 16 23 C -0.18 -2.87 10.41 30.62 0.32 -2.55 16 24 O -0.39 -19.17 6.92 -148.98 -1.03 -20.20 16 25 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.21 3.25 7.13 -2.91 -0.02 3.23 16 34 H 0.15 2.55 7.52 -2.39 -0.02 2.53 16 35 H 0.11 1.05 6.90 -2.39 -0.02 1.03 16 36 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -81.31 308.14 3.44 -77.87 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.85 Total: 12.60 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.10 Total: -21.91 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -3.33 Total: -98.53 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.03 Total: -20.20 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.85 Total: 50.16 kcal Total: -81.31 3.44 -77.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711755230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.372 kcal (2) G-P(sol) polarization free energy of solvation -81.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds