Wall clock time and date at job start Mon Mar 30 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47644 * 2 1 4 4 C 1.50713 * 109.46715 * 240.00823 * 2 1 3 5 5 N 1.27949 * 119.99762 * 120.00014 * 4 2 1 6 6 O 1.41606 * 119.99470 * 180.02562 * 5 4 2 7 7 N 1.46890 * 109.47392 * 120.00921 * 2 1 3 8 8 C 1.46902 * 111.00096 * 176.04131 * 7 2 1 9 9 C 1.46902 * 111.00038 * 299.99251 * 7 2 1 10 10 C 1.50700 * 109.47077 * 170.00019 * 9 7 2 11 11 C 1.38635 * 119.75016 * 90.00831 * 10 9 7 12 12 C 1.37614 * 120.25051 * 179.69933 * 11 10 9 13 13 C 1.40719 * 119.74235 * 0.27218 * 12 11 10 14 14 C 1.41399 * 120.24181 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00238 * 335.28948 * 14 13 12 16 16 C 1.39942 * 119.99857 * 155.28388 * 14 13 12 17 17 N 1.30828 * 120.00153 * 342.23392 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 162.23135 * 16 14 13 19 19 H 1.48497 * 109.47389 * 94.66616 * 18 16 14 20 20 H 1.48504 * 109.47380 * 214.66797 * 18 16 14 21 21 H 1.48503 * 109.47148 * 334.66387 * 18 16 14 22 22 C 1.40710 * 119.51464 * 0.02562 * 13 12 11 23 23 C 1.37618 * 119.74455 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46370 * 299.99494 * 1 2 3 25 25 H 1.08997 * 109.47500 * 59.99157 * 1 2 3 26 26 H 1.08992 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99466 * 299.99903 * 4 2 1 28 28 H 0.96705 * 113.99993 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47101 * 183.94699 * 8 7 2 30 30 H 1.08994 * 109.47405 * 303.95219 * 8 7 2 31 31 H 1.09005 * 109.47047 * 63.95709 * 8 7 2 32 32 H 1.09005 * 109.46885 * 50.00381 * 9 7 2 33 33 H 1.08991 * 109.47363 * 290.00462 * 9 7 2 34 34 H 1.08000 * 119.86943 * 359.97276 * 11 10 9 35 35 H 1.07991 * 120.13000 * 180.29057 * 12 11 10 36 36 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.13173 * 180.02562 * 22 13 12 38 38 H 1.08001 * 119.87978 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2307 5 7 2.7678 -0.0884 -2.0728 6 8 3.2393 -0.7556 -3.2294 7 7 2.0197 -0.6926 1.1992 8 6 3.4851 -0.7947 1.1867 9 6 1.5489 -0.0266 2.4210 10 6 1.8582 -0.8915 3.6157 11 6 3.0676 -0.7439 4.2772 12 6 3.3582 -1.5240 5.3730 13 6 2.4246 -2.4783 5.8179 14 6 2.7120 -3.2850 6.9430 15 1 3.7376 -3.4769 7.2222 16 6 1.6676 -3.8349 7.6949 17 7 0.4589 -3.3452 7.5916 18 14 1.9994 -5.2681 8.8460 19 1 2.2516 -4.7544 10.2163 20 1 0.8205 -6.1710 8.8650 21 1 3.1899 -6.0186 8.3718 22 6 1.2030 -2.6237 5.1350 23 6 0.9336 -1.8328 4.0415 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7713 -1.7442 -1.4016 28 1 3.7866 -0.2047 -3.8058 29 1 3.8165 -1.3724 2.0496 30 1 3.8069 -1.2916 0.2716 31 1 3.9193 0.2042 1.2299 32 1 0.4724 0.1322 2.3564 33 1 2.0521 0.9343 2.5280 34 1 3.7825 -0.0108 3.9338 35 1 4.2989 -1.4041 5.8896 36 1 -0.2651 -3.7266 8.1124 37 1 0.4791 -3.3527 5.4681 38 1 -0.0035 -1.9423 3.5160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714459564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:14 Heat of formation + Delta-G solvation = 30.584720 kcal Electronic energy + Delta-G solvation = -19058.168027 eV Core-core repulsion = 16095.132219 eV Total energy + Delta-G solvation = -2963.035808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.76856 -37.41296 -36.47720 -33.99015 -32.97974 -30.72181 -30.11446 -29.16940 -27.24951 -24.93349 -24.11431 -22.03055 -20.95032 -19.75308 -19.58023 -17.94530 -17.28368 -15.91416 -15.66518 -15.29874 -14.84846 -14.50151 -13.97703 -13.66663 -13.51947 -13.37642 -13.05884 -12.47657 -12.17358 -12.10299 -11.93326 -11.60466 -11.50142 -11.28992 -11.10173 -11.00335 -10.95262 -10.48274 -10.32242 -10.04473 -9.90987 -9.58236 -9.35816 -9.11700 -8.06474 -7.42421 -7.28031 -6.75728 -4.33877 1.90126 2.71856 2.88749 3.07175 3.09471 3.11562 3.19961 3.93652 4.25255 4.65440 4.79761 5.05234 5.17273 5.43625 5.58597 5.69570 5.72847 5.78686 5.84295 5.89452 5.99917 6.14761 6.26240 6.34868 6.38518 6.45925 6.53371 6.97120 7.07599 7.23627 7.31369 7.33864 7.40806 7.59427 7.63259 7.88748 8.06969 8.15585 8.31675 8.66021 8.90864 8.99281 10.18868 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.003745 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.461016 B = 7474.173129 C = 7628.016491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.127 3.873 3 H 0.054 0.946 4 C 0.130 3.870 5 N -0.344 5.344 6 O -0.422 6.422 7 N -0.525 5.525 8 C 0.026 3.974 9 C 0.118 3.882 10 C -0.208 4.208 11 C -0.083 4.083 12 C -0.228 4.228 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.168 4.168 23 C -0.078 4.078 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.401 0.599 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.280 0.720 37 H 0.116 0.884 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 4.621 -11.776 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.072 0.928 4 C -0.084 4.084 5 N -0.086 5.086 6 O -0.328 6.328 7 N -0.251 5.251 8 C -0.122 4.122 9 C -0.008 4.008 10 C -0.210 4.210 11 C -0.102 4.102 12 C -0.247 4.247 13 C 0.111 3.889 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.187 4.187 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.248 0.752 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.154 4.467 -11.709 12.533 hybrid contribution 0.576 -0.306 0.188 0.679 sum 0.422 4.161 -11.520 12.256 Atomic orbital electron populations 1.21870 0.92489 1.03550 1.02260 1.20459 0.96046 0.95234 0.86526 0.92793 1.26014 0.90730 0.99052 0.92628 1.75986 1.11643 1.25053 0.95897 1.88482 1.71218 1.40101 1.32957 1.62229 1.10663 1.51641 1.00593 1.22398 0.87205 0.99862 1.02731 1.20863 0.99405 0.93634 0.86897 1.18793 0.97339 1.04951 0.99921 1.20358 0.95213 0.98500 0.96143 1.20932 1.01254 1.01373 1.01186 1.17617 0.91100 0.89132 0.91070 1.19598 0.93905 1.26392 1.09404 0.90552 1.25898 0.94530 0.96639 0.97047 1.69830 1.01557 1.35602 1.34791 0.86345 0.79295 0.81225 0.80125 1.19635 1.20035 1.18448 1.21295 0.99461 1.02020 0.95925 1.20480 0.97020 0.95806 0.96362 0.90866 0.92261 0.90960 0.86509 0.75176 0.89624 0.92767 0.96143 0.90778 0.95613 0.89933 0.89224 0.90919 0.86584 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.97 37.16 0.33 -1.22 16 2 C 0.13 1.62 2.56 -68.86 -0.18 1.45 16 3 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 4 C 0.13 1.69 8.34 -13.89 -0.12 1.58 16 5 N -0.34 -4.59 12.02 32.65 0.39 -4.20 16 6 O -0.42 -5.06 14.94 -11.47 -0.17 -5.23 16 7 N -0.53 -8.09 4.61 -237.73 -1.10 -9.19 16 8 C 0.03 0.41 8.86 60.07 0.53 0.94 16 9 C 0.12 1.96 4.92 -4.97 -0.02 1.94 16 10 C -0.21 -4.33 4.91 -104.33 -0.51 -4.84 16 11 C -0.08 -1.80 7.92 -39.66 -0.31 -2.12 16 12 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 13 C 0.11 2.99 5.57 -106.82 -0.60 2.39 16 14 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.31 10.97 55.55 0.61 -19.70 16 18 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 23 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 24 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.40 2.79 9.28 45.56 0.42 3.21 16 29 H 0.09 1.49 6.16 -51.93 -0.32 1.17 16 30 H 0.05 0.80 6.83 -51.93 -0.35 0.45 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 1.14 5.77 -51.93 -0.30 0.84 16 33 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.08 1.60 8.02 -52.49 -0.42 1.17 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.12 3.08 6.18 -52.49 -0.32 2.76 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -28.42 317.27 -7.47 -35.89 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.54 Total: 7.43 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.41 Total: -23.30 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: -0.10 Total: -33.09 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.17 Total: -5.23 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.42 -7.47 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714459564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.471 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds