Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47644 * 2 1 4 4 C 1.50713 * 109.46715 * 240.00823 * 2 1 3 5 5 N 1.27949 * 119.99762 * 120.00014 * 4 2 1 6 6 O 1.41606 * 119.99470 * 180.02562 * 5 4 2 7 7 N 1.46890 * 109.47392 * 120.00921 * 2 1 3 8 8 C 1.46902 * 111.00096 * 176.04131 * 7 2 1 9 9 C 1.46902 * 111.00038 * 299.99251 * 7 2 1 10 10 C 1.50700 * 109.47077 * 170.00019 * 9 7 2 11 11 C 1.38635 * 119.75016 * 90.00831 * 10 9 7 12 12 C 1.37614 * 120.25051 * 179.69933 * 11 10 9 13 13 C 1.40719 * 119.74235 * 0.27218 * 12 11 10 14 14 C 1.41399 * 120.24181 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00238 * 335.28948 * 14 13 12 16 16 C 1.39942 * 119.99857 * 155.28388 * 14 13 12 17 17 N 1.30828 * 120.00153 * 342.23392 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 162.23135 * 16 14 13 19 19 H 1.48497 * 109.47389 * 94.66616 * 18 16 14 20 20 H 1.48504 * 109.47380 * 214.66797 * 18 16 14 21 21 H 1.48503 * 109.47148 * 334.66387 * 18 16 14 22 22 C 1.40710 * 119.51464 * 0.02562 * 13 12 11 23 23 C 1.37618 * 119.74455 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46370 * 299.99494 * 1 2 3 25 25 H 1.08997 * 109.47500 * 59.99157 * 1 2 3 26 26 H 1.08992 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99466 * 299.99903 * 4 2 1 28 28 H 0.96705 * 113.99993 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47101 * 183.94699 * 8 7 2 30 30 H 1.08994 * 109.47405 * 303.95219 * 8 7 2 31 31 H 1.09005 * 109.47047 * 63.95709 * 8 7 2 32 32 H 1.09005 * 109.46885 * 50.00381 * 9 7 2 33 33 H 1.08991 * 109.47363 * 290.00462 * 9 7 2 34 34 H 1.08000 * 119.86943 * 359.97276 * 11 10 9 35 35 H 1.07991 * 120.13000 * 180.29057 * 12 11 10 36 36 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.13173 * 180.02562 * 22 13 12 38 38 H 1.08001 * 119.87978 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2307 5 7 2.7678 -0.0884 -2.0728 6 8 3.2393 -0.7556 -3.2294 7 7 2.0197 -0.6926 1.1992 8 6 3.4851 -0.7947 1.1867 9 6 1.5489 -0.0266 2.4210 10 6 1.8582 -0.8915 3.6157 11 6 3.0676 -0.7439 4.2772 12 6 3.3582 -1.5240 5.3730 13 6 2.4246 -2.4783 5.8179 14 6 2.7120 -3.2850 6.9430 15 1 3.7376 -3.4769 7.2222 16 6 1.6676 -3.8349 7.6949 17 7 0.4589 -3.3452 7.5916 18 14 1.9994 -5.2681 8.8460 19 1 2.2516 -4.7544 10.2163 20 1 0.8205 -6.1710 8.8650 21 1 3.1899 -6.0186 8.3718 22 6 1.2030 -2.6237 5.1350 23 6 0.9336 -1.8328 4.0415 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7713 -1.7442 -1.4016 28 1 3.7866 -0.2047 -3.8058 29 1 3.8165 -1.3724 2.0496 30 1 3.8069 -1.2916 0.2716 31 1 3.9193 0.2042 1.2299 32 1 0.4724 0.1322 2.3564 33 1 2.0521 0.9343 2.5280 34 1 3.7825 -0.0108 3.9338 35 1 4.2989 -1.4041 5.8896 36 1 -0.2651 -3.7266 8.1124 37 1 0.4791 -3.3527 5.4681 38 1 -0.0035 -1.9423 3.5160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714459564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = 11.934949 kcal Electronic energy + Delta-G solvation = -19058.976742 eV Core-core repulsion = 16095.132219 eV Total energy + Delta-G solvation = -2963.844522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11109 -38.88776 -37.60021 -35.65637 -34.23889 -32.10075 -31.50397 -30.90588 -28.83013 -26.40924 -25.30754 -23.40802 -22.79000 -21.37972 -20.64864 -19.17426 -18.92209 -17.19778 -16.91286 -16.79628 -16.09487 -15.89076 -15.66303 -15.08448 -14.88585 -14.56898 -14.26570 -14.15886 -13.74172 -13.40952 -13.20610 -13.13261 -12.79536 -12.76020 -12.64036 -12.41052 -12.33944 -12.05358 -11.88394 -11.38474 -11.18867 -11.02401 -10.96639 -10.85256 -9.32486 -9.27556 -9.07807 -8.60343 -6.28910 0.86275 1.04157 1.21477 1.39142 1.49775 1.55217 1.98428 2.22779 2.72412 3.18250 3.74925 3.87002 4.09069 4.18294 4.22769 4.37097 4.54927 4.55687 4.63870 4.68689 4.74728 4.81741 4.92675 5.06390 5.07789 5.12595 5.20065 5.36871 5.44323 5.52228 5.69415 5.76856 5.98895 6.05459 6.16077 6.22076 6.34955 6.45154 6.76425 6.76864 6.99350 7.09987 8.36691 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.003745 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.461016 B = 7474.173129 C = 7628.016491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.132 3.868 3 H 0.058 0.942 4 C 0.128 3.872 5 N -0.353 5.353 6 O -0.429 6.429 7 N -0.535 5.535 8 C 0.032 3.968 9 C 0.123 3.877 10 C -0.192 4.192 11 C -0.082 4.082 12 C -0.246 4.246 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.036 3.964 17 N -0.825 5.825 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.261 1.261 22 C -0.192 4.192 23 C -0.082 4.082 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.420 0.580 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.287 0.713 37 H 0.097 0.903 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 5.419 -13.189 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.076 0.924 4 C -0.087 4.087 5 N -0.094 5.094 6 O -0.339 6.339 7 N -0.261 5.261 8 C -0.117 4.117 9 C -0.003 4.003 10 C -0.194 4.194 11 C -0.100 4.100 12 C -0.265 4.265 13 C 0.078 3.922 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.185 1.185 22 C -0.211 4.211 23 C -0.100 4.100 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.271 0.729 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.401 5.293 -13.145 14.176 hybrid contribution 0.692 -0.426 0.412 0.912 sum 0.292 4.866 -12.733 13.634 Atomic orbital electron populations 1.21876 0.90914 1.03748 1.03350 1.20470 0.97167 0.94906 0.85112 0.92367 1.26007 0.90839 0.99063 0.92762 1.75903 1.11533 1.25593 0.96377 1.88460 1.71653 1.40959 1.32818 1.62076 1.10558 1.52332 1.01118 1.22300 0.87466 0.99999 1.01906 1.20796 1.00851 0.92989 0.85692 1.19240 0.96010 1.03656 1.00472 1.20649 0.96081 0.98210 0.95097 1.21128 1.01200 1.01791 1.02400 1.17945 0.92156 0.90264 0.91851 1.19823 0.94241 1.28666 1.10778 0.91116 1.26698 0.94017 0.98740 0.98371 1.69877 1.02416 1.36851 1.35972 0.85253 0.79206 0.77640 0.77960 1.18778 1.18958 1.18512 1.21260 0.99289 1.03078 0.97493 1.20744 0.98274 0.95503 0.95526 0.90471 0.90486 0.91220 0.86559 0.72906 0.91910 0.92299 0.95246 0.88944 0.94367 0.87252 0.89098 0.90226 0.88488 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.97 71.98 0.65 -1.95 16 2 C 0.13 2.99 2.56 44.18 0.11 3.10 16 3 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 4 C 0.13 3.01 8.34 88.68 0.74 3.75 16 5 N -0.35 -8.55 12.02 -50.49 -0.61 -9.16 16 6 O -0.43 -9.30 14.94 -38.80 -0.58 -9.88 16 7 N -0.53 -15.07 4.61 -906.04 -4.18 -19.25 16 8 C 0.03 0.91 8.86 127.69 1.13 2.05 16 9 C 0.12 3.72 4.92 85.56 0.42 4.14 16 10 C -0.19 -7.69 4.91 -19.67 -0.10 -7.79 16 11 C -0.08 -3.46 7.92 22.22 0.18 -3.28 16 12 C -0.25 -12.11 9.80 22.73 0.22 -11.88 16 13 C 0.08 4.37 5.57 -21.29 -0.12 4.26 16 14 C -0.51 -27.84 9.05 23.46 0.21 -27.63 16 15 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 16 C 0.04 1.86 5.14 85.26 0.44 2.30 16 17 N -0.82 -43.55 10.97 21.83 0.24 -43.31 16 18 Si 0.98 38.80 29.59 68.60 2.03 40.83 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.19 -10.08 8.70 22.73 0.20 -9.88 16 23 C -0.08 -3.66 9.67 22.22 0.21 -3.45 16 24 H 0.08 1.37 6.20 -2.39 -0.01 1.36 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 28 H 0.42 4.86 9.28 -74.05 -0.69 4.17 16 29 H 0.06 2.10 6.16 -2.39 -0.01 2.09 16 30 H 0.06 1.64 6.83 -2.39 -0.02 1.62 16 31 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 2.50 5.77 -2.38 -0.01 2.49 16 33 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.11 4.00 8.02 -2.91 -0.02 3.97 16 35 H 0.09 4.31 8.06 -2.92 -0.02 4.28 16 36 H 0.29 13.66 8.30 -92.71 -0.77 12.90 16 37 H 0.10 5.38 6.18 -2.91 -0.02 5.36 16 38 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -62.10 317.27 1.57 -60.52 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.37 Total: 26.52 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 4.30 Total: -46.27 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -4.55 Total: -71.72 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.58 Total: -9.88 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -62.10 1.57 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714459564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.458 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds