Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.87443 * 2 1 4 4 H 1.08004 * 120.00546 * 120.72188 * 3 2 1 5 5 C 1.37885 * 119.99721 * 300.44439 * 3 2 1 6 6 N 1.31514 * 120.00035 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 119.99853 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.46986 * 90.00256 * 7 5 3 9 9 H 1.48496 * 109.47029 * 210.00273 * 7 5 3 10 10 H 1.48499 * 109.47352 * 330.00102 * 7 5 3 11 11 C 1.54104 * 110.00296 * 121.08381 * 2 1 3 12 12 C 1.54815 * 104.18881 * 117.46017 * 11 2 1 13 13 C 1.54997 * 102.09040 * 339.12339 * 12 11 2 14 14 H 1.08997 * 110.75215 * 278.45285 * 13 12 11 15 15 C 1.50702 * 110.61717 * 155.52085 * 13 12 11 16 16 C 1.34564 * 126.57821 * 89.15857 * 15 13 12 17 17 N 1.34016 * 108.02544 * 179.86466 * 16 15 13 18 18 C 1.30904 * 109.30391 * 0.31907 * 17 16 15 19 19 N 1.34816 * 108.60959 * 359.89737 * 18 17 16 20 20 C 1.47008 * 111.18008 * 179.78789 * 19 18 17 21 21 C 1.54393 * 105.52925 * 17.10372 * 20 19 18 22 22 C 1.51562 * 141.44604 * 179.97438 * 18 17 16 23 23 O 1.43743 * 109.88046 * 238.98690 * 2 1 3 24 24 H 1.09002 * 109.47217 * 59.29941 * 1 2 3 25 25 H 1.08998 * 109.47297 * 179.30210 * 1 2 3 26 26 H 1.08999 * 109.47167 * 299.30507 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 6 5 3 28 28 H 1.08995 * 110.49062 * 236.14311 * 11 2 1 29 29 H 1.08997 * 110.48524 * 358.78907 * 11 2 1 30 30 H 1.08990 * 110.91027 * 220.92116 * 12 11 2 31 31 H 1.09003 * 110.93447 * 97.33035 * 12 11 2 32 32 H 1.07992 * 125.98603 * 0.02562 * 16 15 13 33 33 H 1.08998 * 110.23546 * 136.11931 * 20 19 18 34 34 H 1.09000 * 110.23340 * 258.09365 * 20 19 18 35 35 H 1.08994 * 110.96466 * 92.40487 * 21 20 19 36 36 H 1.09000 * 110.96758 * 216.16403 * 21 20 19 37 37 H 1.08999 * 110.47682 * 44.66495 * 22 18 17 38 38 H 1.09007 * 110.48224 * 282.04698 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0422 1.4172 0.0000 4 1 2.6752 1.7627 0.8040 5 6 1.7076 2.2712 -1.0295 6 7 0.9409 1.8491 -2.0111 7 14 2.3420 4.0282 -1.0292 8 1 3.6456 4.0839 -1.7383 9 1 1.3648 4.9074 -1.7199 10 1 2.5200 4.4900 0.3709 11 6 2.0571 -0.7476 1.2402 12 6 2.8373 -1.9501 0.6552 13 6 2.2313 -2.0696 -0.7664 14 1 1.2861 -2.6117 -0.7390 15 6 3.2013 -2.7445 -1.7017 16 6 3.3091 -4.0665 -1.9281 17 7 4.2860 -4.2553 -2.8259 18 6 4.7951 -3.0969 -3.1614 19 7 4.1481 -2.1293 -2.4812 20 6 4.6806 -0.7998 -2.8130 21 6 5.4715 -0.9872 -4.1256 22 6 5.8573 -2.4818 -4.0506 23 8 2.0188 -0.6965 -1.1585 24 1 -0.3634 0.5247 -0.8836 25 1 -0.3634 -1.0276 -0.0125 26 1 -0.3633 0.5030 0.8961 27 1 0.7051 2.4500 -2.7352 28 1 2.7221 -0.1062 1.8183 29 1 1.2283 -1.0945 1.8573 30 1 2.6506 -2.8540 1.2348 31 1 3.9047 -1.7351 0.6062 32 1 2.7111 -4.8398 -1.4690 33 1 3.8642 -0.0933 -2.9624 34 1 5.3425 -0.4503 -2.0207 35 1 4.8409 -0.7900 -4.9925 36 1 6.3597 -0.3554 -4.1394 37 1 5.8318 -2.9325 -5.0427 38 1 6.8442 -2.5989 -3.6028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719149730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = 22.048459 kcal Electronic energy + Delta-G solvation = -20703.013446 eV Core-core repulsion = 17739.607479 eV Total energy + Delta-G solvation = -2963.405968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.00564 -38.40486 -36.00908 -33.20574 -31.55410 -31.05144 -29.99286 -28.07200 -27.00170 -25.43311 -24.12411 -21.85840 -21.30816 -20.02930 -19.51661 -18.94958 -16.85006 -16.32677 -15.42890 -15.12091 -14.62261 -14.18766 -13.69119 -13.59955 -13.40491 -13.16474 -12.96644 -12.78771 -12.43286 -11.97710 -11.84353 -11.34353 -11.30822 -11.02256 -10.96938 -10.82435 -10.73912 -10.53547 -10.30831 -9.96932 -9.69673 -9.51644 -9.14739 -9.01994 -8.61389 -8.16200 -7.68295 -6.05862 -4.22308 2.49049 3.20620 3.26787 3.29022 3.31664 3.49201 4.17223 4.32080 4.63679 4.85133 4.93887 5.02123 5.28762 5.43371 5.54718 5.63721 5.67926 5.71628 5.76259 5.89326 5.94012 6.03462 6.10860 6.16307 6.30284 6.45058 6.52063 6.68631 6.73990 6.83981 6.90232 7.11160 7.22263 7.27741 7.52729 7.68509 8.03769 8.25623 8.45552 8.53296 8.90597 9.48057 10.95806 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.008035 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.720368 B = 3483.998781 C = 4435.882440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.226 3.774 3 C -0.522 4.522 4 H 0.061 0.939 5 C 0.080 3.920 6 N -0.859 5.859 7 Si 0.887 3.113 8 H -0.280 1.280 9 H -0.285 1.285 10 H -0.273 1.273 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.133 3.867 14 H 0.072 0.928 15 C 0.032 3.968 16 C -0.037 4.037 17 N -0.485 5.485 18 C 0.161 3.839 19 N -0.446 5.446 20 C 0.105 3.895 21 C -0.131 4.131 22 C -0.035 4.035 23 O -0.340 6.340 24 H 0.089 0.911 25 H 0.011 0.989 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.169 0.831 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -5.174 -1.136 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.188 3.812 3 C -0.560 4.560 4 H 0.079 0.921 5 C -0.125 4.125 6 N -0.495 5.495 7 Si 0.714 3.286 8 H -0.206 1.206 9 H -0.211 1.211 10 H -0.198 1.198 11 C -0.179 4.179 12 C -0.176 4.176 13 C 0.073 3.927 14 H 0.090 0.910 15 C -0.084 4.084 16 C -0.185 4.185 17 N -0.205 5.205 18 C -0.101 4.101 19 N -0.128 5.128 20 C -0.016 4.016 21 C -0.169 4.169 22 C -0.074 4.074 23 O -0.259 6.259 24 H 0.108 0.892 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.187 0.813 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.628 -5.544 -1.727 8.812 hybrid contribution -0.107 1.604 0.604 1.718 sum 6.521 -3.940 -1.123 7.701 Atomic orbital electron populations 1.22155 0.98078 0.97636 1.02785 1.19675 0.90662 0.90855 0.79959 1.21074 1.32709 0.93785 1.08424 0.92109 1.25025 0.94205 0.98099 0.95203 1.69973 1.34288 1.35189 1.10033 0.86700 0.78781 0.84833 0.78291 1.20589 1.21102 1.19820 1.23087 0.98897 0.95993 0.99953 1.23039 1.00144 0.98522 0.95897 1.21304 0.93127 0.88355 0.89884 0.91020 1.21028 0.95281 0.92372 0.99731 1.21847 1.01401 0.93214 1.02079 1.69768 1.11417 1.24084 1.15188 1.24174 0.99814 0.85336 1.00770 1.46050 1.25855 1.09148 1.31731 1.22375 0.99450 0.83019 0.96763 1.22756 1.00908 0.95612 0.97643 1.20556 0.94903 0.93583 0.98331 1.89273 1.85968 1.14870 1.35838 0.89198 0.97011 0.94529 0.93018 0.91559 0.92649 0.91788 0.91928 0.81346 0.87203 0.89767 0.89677 0.88561 0.89111 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.40 37.15 0.31 -3.22 16 2 C 0.23 5.44 0.74 -91.20 -0.07 5.37 16 3 C -0.52 -13.74 8.25 -34.44 -0.28 -14.02 16 4 H 0.06 1.58 7.33 -52.48 -0.38 1.20 16 5 C 0.08 2.11 5.26 -17.82 -0.09 2.02 16 6 N -0.86 -23.55 10.94 55.43 0.61 -22.95 16 7 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 8 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C -0.14 -2.88 6.27 -25.20 -0.16 -3.04 16 12 C -0.14 -2.56 6.58 -24.72 -0.16 -2.73 16 13 C 0.13 2.73 3.79 -26.83 -0.10 2.62 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.03 0.63 6.26 -81.49 -0.51 0.12 16 16 C -0.04 -0.69 11.78 -17.90 -0.21 -0.90 16 17 N -0.48 -9.36 11.26 -10.56 -0.12 -9.48 16 18 C 0.16 2.85 8.58 -154.86 -1.33 1.52 16 19 N -0.45 -8.44 3.55 -107.74 -0.38 -8.82 16 20 C 0.11 1.75 7.42 -3.03 -0.02 1.73 16 21 C -0.13 -1.56 7.17 -25.19 -0.18 -1.74 16 22 C -0.03 -0.43 6.86 -26.65 -0.18 -0.61 16 23 O -0.34 -8.34 9.36 -35.23 -0.33 -8.67 16 24 H 0.09 2.38 6.05 -51.93 -0.31 2.06 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.07 1.35 7.40 -51.93 -0.38 0.97 16 29 H 0.05 1.03 7.70 -51.93 -0.40 0.63 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 33 H 0.11 2.18 7.87 -51.93 -0.41 1.78 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -30.55 307.36 -9.28 -39.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.67 Total: 3.12 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.99 Total: -12.87 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.11 Total: -41.25 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.33 Total: -8.67 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.55 -9.28 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719149730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.879 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds