Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.87443 * 2 1 4 4 H 1.08004 * 120.00546 * 120.72188 * 3 2 1 5 5 C 1.37885 * 119.99721 * 300.44439 * 3 2 1 6 6 N 1.31514 * 120.00035 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 119.99853 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.46986 * 90.00256 * 7 5 3 9 9 H 1.48496 * 109.47029 * 210.00273 * 7 5 3 10 10 H 1.48499 * 109.47352 * 330.00102 * 7 5 3 11 11 C 1.54104 * 110.00296 * 121.08381 * 2 1 3 12 12 C 1.54815 * 104.18881 * 117.46017 * 11 2 1 13 13 C 1.54997 * 102.09040 * 339.12339 * 12 11 2 14 14 H 1.08997 * 110.75215 * 278.45285 * 13 12 11 15 15 C 1.50702 * 110.61717 * 155.52085 * 13 12 11 16 16 C 1.34564 * 126.57821 * 89.15857 * 15 13 12 17 17 N 1.34016 * 108.02544 * 179.86466 * 16 15 13 18 18 C 1.30904 * 109.30391 * 0.31907 * 17 16 15 19 19 N 1.34816 * 108.60959 * 359.89737 * 18 17 16 20 20 C 1.47008 * 111.18008 * 179.78789 * 19 18 17 21 21 C 1.54393 * 105.52925 * 17.10372 * 20 19 18 22 22 C 1.51562 * 141.44604 * 179.97438 * 18 17 16 23 23 O 1.43743 * 109.88046 * 238.98690 * 2 1 3 24 24 H 1.09002 * 109.47217 * 59.29941 * 1 2 3 25 25 H 1.08998 * 109.47297 * 179.30210 * 1 2 3 26 26 H 1.08999 * 109.47167 * 299.30507 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 6 5 3 28 28 H 1.08995 * 110.49062 * 236.14311 * 11 2 1 29 29 H 1.08997 * 110.48524 * 358.78907 * 11 2 1 30 30 H 1.08990 * 110.91027 * 220.92116 * 12 11 2 31 31 H 1.09003 * 110.93447 * 97.33035 * 12 11 2 32 32 H 1.07992 * 125.98603 * 0.02562 * 16 15 13 33 33 H 1.08998 * 110.23546 * 136.11931 * 20 19 18 34 34 H 1.09000 * 110.23340 * 258.09365 * 20 19 18 35 35 H 1.08994 * 110.96466 * 92.40487 * 21 20 19 36 36 H 1.09000 * 110.96758 * 216.16403 * 21 20 19 37 37 H 1.08999 * 110.47682 * 44.66495 * 22 18 17 38 38 H 1.09007 * 110.48224 * 282.04698 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0422 1.4172 0.0000 4 1 2.6752 1.7627 0.8040 5 6 1.7076 2.2712 -1.0295 6 7 0.9409 1.8491 -2.0111 7 14 2.3420 4.0282 -1.0292 8 1 3.6456 4.0839 -1.7383 9 1 1.3648 4.9074 -1.7199 10 1 2.5200 4.4900 0.3709 11 6 2.0571 -0.7476 1.2402 12 6 2.8373 -1.9501 0.6552 13 6 2.2313 -2.0696 -0.7664 14 1 1.2861 -2.6117 -0.7390 15 6 3.2013 -2.7445 -1.7017 16 6 3.3091 -4.0665 -1.9281 17 7 4.2860 -4.2553 -2.8259 18 6 4.7951 -3.0969 -3.1614 19 7 4.1481 -2.1293 -2.4812 20 6 4.6806 -0.7998 -2.8130 21 6 5.4715 -0.9872 -4.1256 22 6 5.8573 -2.4818 -4.0506 23 8 2.0188 -0.6965 -1.1585 24 1 -0.3634 0.5247 -0.8836 25 1 -0.3634 -1.0276 -0.0125 26 1 -0.3633 0.5030 0.8961 27 1 0.7051 2.4500 -2.7352 28 1 2.7221 -0.1062 1.8183 29 1 1.2283 -1.0945 1.8573 30 1 2.6506 -2.8540 1.2348 31 1 3.9047 -1.7351 0.6062 32 1 2.7111 -4.8398 -1.4690 33 1 3.8642 -0.0933 -2.9624 34 1 5.3425 -0.4503 -2.0207 35 1 4.8409 -0.7900 -4.9925 36 1 6.3597 -0.3554 -4.1394 37 1 5.8318 -2.9325 -5.0427 38 1 6.8442 -2.5989 -3.6028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719149730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = 4.707776 kcal Electronic energy + Delta-G solvation = -20703.765395 eV Core-core repulsion = 17739.607479 eV Total energy + Delta-G solvation = -2964.157916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.36897 -40.11872 -37.23454 -35.09332 -33.05180 -32.75778 -31.55824 -29.52616 -28.33201 -27.37867 -25.76184 -23.02676 -22.85665 -21.41860 -21.23351 -20.41473 -18.71899 -17.61777 -16.94996 -16.74380 -16.45608 -15.65093 -15.26597 -14.91990 -14.82245 -14.65766 -14.38397 -14.13639 -14.12039 -13.58875 -13.19208 -13.10905 -12.82584 -12.57581 -12.46968 -12.40526 -12.28778 -12.07683 -11.90018 -11.82741 -11.38561 -11.08220 -10.86514 -10.61756 -10.43303 -9.97843 -9.10356 -8.05594 -6.28668 1.08427 1.38560 1.41344 1.50095 1.94285 2.10395 2.40671 2.97158 3.07080 3.48528 3.61162 3.80084 3.92466 3.95508 4.00788 4.16680 4.38867 4.48353 4.56109 4.62148 4.67831 4.72076 4.80362 4.87407 4.91568 4.97116 4.99409 5.03096 5.11870 5.18491 5.23116 5.37918 5.56250 5.65630 5.89462 6.09305 6.17816 6.32243 6.56524 7.00800 7.13894 7.45639 8.94893 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.008035 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.720368 B = 3483.998781 C = 4435.882440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 C -0.541 4.541 4 H 0.056 0.944 5 C 0.037 3.963 6 N -0.886 5.886 7 Si 0.945 3.055 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.269 1.269 11 C -0.137 4.137 12 C -0.124 4.124 13 C 0.130 3.870 14 H 0.076 0.924 15 C -0.002 4.002 16 C -0.035 4.035 17 N -0.513 5.513 18 C 0.162 3.838 19 N -0.461 5.461 20 C 0.101 3.899 21 C -0.114 4.114 22 C -0.030 4.030 23 O -0.369 6.369 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.257 0.743 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.192 0.808 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 -5.657 -1.213 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.175 3.825 3 C -0.578 4.578 4 H 0.074 0.926 5 C -0.166 4.166 6 N -0.523 5.523 7 Si 0.771 3.229 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.193 1.193 11 C -0.174 4.174 12 C -0.162 4.162 13 C 0.071 3.929 14 H 0.094 0.906 15 C -0.118 4.118 16 C -0.183 4.183 17 N -0.233 5.233 18 C -0.101 4.101 19 N -0.143 5.143 20 C -0.021 4.021 21 C -0.152 4.152 22 C -0.069 4.069 23 O -0.288 6.288 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.209 0.791 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.273 -6.028 -1.791 10.391 hybrid contribution -0.633 1.713 0.621 1.929 sum 7.640 -4.315 -1.170 8.852 Atomic orbital electron populations 1.22041 0.98314 0.98187 1.01433 1.19760 0.90633 0.90607 0.81509 1.21401 1.32598 0.95506 1.08328 0.92632 1.25691 0.94369 1.01622 0.94885 1.70119 1.35422 1.36247 1.10531 0.85772 0.78290 0.80492 0.78342 1.19966 1.21050 1.19343 1.22992 0.99588 0.96256 0.98594 1.22954 0.99067 0.99091 0.95060 1.21427 0.93817 0.86562 0.91129 0.90638 1.21111 0.96457 0.93029 1.01155 1.22268 1.01157 0.93330 1.01518 1.69804 1.12314 1.25018 1.16120 1.25254 0.99915 0.84704 1.00193 1.46332 1.26013 1.10095 1.31878 1.22474 0.98425 0.81632 0.99538 1.22802 1.01524 0.96190 0.94685 1.20839 0.94406 0.92972 0.98644 1.89213 1.86124 1.17072 1.36409 0.92353 0.95357 0.94000 0.93326 0.91997 0.90727 0.88489 0.92866 0.79127 0.91459 0.89585 0.89585 0.84795 0.86886 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.40 71.98 0.60 -6.20 16 2 C 0.21 10.33 0.74 -11.17 -0.01 10.32 16 3 C -0.54 -28.89 8.25 25.60 0.21 -28.68 16 4 H 0.06 2.93 7.33 -2.91 -0.02 2.91 16 5 C 0.04 1.98 5.26 84.66 0.45 2.43 16 6 N -0.89 -50.01 10.94 21.45 0.23 -49.77 16 7 Si 0.95 41.99 29.54 68.60 2.03 44.01 16 8 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 C -0.14 -5.45 6.27 31.59 0.20 -5.25 16 12 C -0.12 -4.46 6.58 31.90 0.21 -4.25 16 13 C 0.13 5.31 3.79 30.53 0.12 5.42 16 14 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 15 C 0.00 -0.08 6.26 40.88 0.26 0.18 16 16 C -0.03 -1.27 11.78 83.52 0.98 -0.28 16 17 N -0.51 -19.13 11.26 -187.33 -2.11 -21.24 16 18 C 0.16 5.47 8.58 138.36 1.19 6.65 16 19 N -0.46 -17.30 3.55 -494.77 -1.76 -19.05 16 20 C 0.10 3.34 7.42 86.76 0.64 3.98 16 21 C -0.11 -2.44 7.17 31.59 0.23 -2.21 16 22 C -0.03 -0.64 6.86 30.65 0.21 -0.43 16 23 O -0.37 -18.46 9.36 -148.98 -1.39 -19.86 16 24 H 0.06 3.17 6.05 -2.39 -0.01 3.15 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.06 2.49 7.40 -2.39 -0.02 2.47 16 29 H 0.07 2.65 7.70 -2.39 -0.02 2.63 16 30 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 32 H 0.19 5.69 8.06 -2.91 -0.02 5.67 16 33 H 0.07 2.80 7.87 -2.39 -0.02 2.78 16 34 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -67.55 307.36 3.33 -64.23 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.04 Total: 20.00 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.28 Total: -18.32 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -3.63 Total: -90.07 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.39 Total: -19.86 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.55 3.33 -64.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719149730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.933 kcal (2) G-P(sol) polarization free energy of solvation -67.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds