Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47264 * 269.99840 * 3 2 1 5 5 H 1.48504 * 109.47213 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47179 * 149.99981 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.48301 * 60.01255 * 9 7 2 11 11 C 1.53086 * 109.49263 * 180.02562 * 9 7 2 12 12 C 1.53181 * 109.16648 * 177.59383 * 11 9 7 13 13 C 1.53175 * 109.03363 * 303.01786 * 12 11 9 14 14 C 1.53094 * 109.16489 * 56.97988 * 13 12 11 15 15 H 1.09007 * 109.48981 * 62.37893 * 14 13 12 16 16 C 1.50702 * 109.47981 * 182.40595 * 14 13 12 17 17 C 1.34558 * 126.57810 * 84.97103 * 16 14 13 18 18 N 1.34014 * 108.02660 * 179.97438 * 17 16 14 19 19 C 1.30905 * 109.30086 * 0.08681 * 18 17 16 20 20 N 1.34814 * 108.61190 * 359.82532 * 19 18 17 21 21 C 1.47004 * 111.17949 * 180.25428 * 20 19 18 22 22 C 1.54385 * 105.53352 * 342.89389 * 21 20 19 23 23 C 1.51570 * 141.44119 * 179.79441 * 19 18 17 24 24 O 1.42906 * 109.47444 * 299.99344 * 9 7 2 25 25 H 0.96992 * 119.99827 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52480 * 297.49804 * 11 9 7 27 27 H 1.09000 * 109.52331 * 57.68367 * 11 9 7 28 28 H 1.09002 * 109.54136 * 62.88343 * 12 11 9 29 29 H 1.09003 * 109.54392 * 183.15104 * 12 11 9 30 30 H 1.08997 * 109.52543 * 297.07319 * 13 12 11 31 31 H 1.09001 * 109.52237 * 176.88470 * 13 12 11 32 32 H 1.07996 * 125.98770 * 0.25934 * 17 16 14 33 33 H 1.09003 * 110.23694 * 223.87848 * 21 20 19 34 34 H 1.09005 * 110.23816 * 101.90894 * 21 20 19 35 35 H 1.09001 * 110.96994 * 267.60046 * 22 21 20 36 36 H 1.08995 * 110.97409 * 143.83457 * 22 21 20 37 37 H 1.08997 * 110.47875 * 315.27106 * 23 19 18 38 38 H 1.09000 * 110.47625 * 77.76246 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5574 -0.8897 11 6 2.2455 -3.6631 0.0018 12 6 1.4731 -4.9844 0.0626 13 6 0.5781 -4.9832 1.3056 14 6 -0.3520 -3.7682 1.2541 15 1 -0.9997 -3.8429 0.3804 16 6 -1.1950 -3.7273 2.5026 17 6 -0.8496 -3.1882 3.6860 18 7 -1.8738 -3.3573 4.5336 19 6 -2.8446 -3.9849 3.9193 20 7 -2.4624 -4.2314 2.6502 21 6 -3.5177 -4.9322 1.9044 22 6 -4.4751 -5.4977 2.9754 23 6 -4.2419 -4.5238 4.1525 24 8 0.4292 -2.5748 1.1671 25 1 -0.4849 0.8400 0.0004 26 1 2.8435 -3.6323 -0.9090 27 1 2.8990 -3.5829 0.8705 28 1 0.8567 -5.0878 -0.8305 29 1 2.1761 -5.8155 0.1202 30 1 1.1978 -4.9297 2.2007 31 1 -0.0166 -5.8964 1.3273 32 1 0.0870 -2.7002 3.9119 33 1 -3.0886 -5.7434 1.3162 34 1 -4.0476 -4.2347 1.2555 35 1 -4.1962 -6.5150 3.2498 36 1 -5.5096 -5.4569 2.6345 37 1 -4.2921 -5.0553 5.1028 38 1 -4.9715 -3.7142 4.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719152012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = 15.756212 kcal Electronic energy + Delta-G solvation = -20221.275391 eV Core-core repulsion = 17257.596571 eV Total energy + Delta-G solvation = -2963.678820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06062 -38.15048 -36.13102 -33.07512 -32.49824 -31.77555 -30.25742 -28.01038 -27.03071 -25.44851 -23.37637 -22.05965 -21.78655 -20.28703 -19.25570 -19.11824 -16.76307 -16.53964 -15.53735 -14.95081 -14.61357 -14.34205 -14.21255 -13.85599 -13.50684 -13.42305 -13.19511 -13.06829 -12.66180 -12.12473 -12.03900 -11.74314 -11.68809 -11.15446 -10.95905 -10.91811 -10.72247 -10.38460 -10.33524 -9.94017 -9.89735 -9.33287 -9.14522 -8.90251 -8.52078 -8.02002 -7.62111 -6.01597 -4.14222 2.44030 2.99187 3.32007 3.39465 3.42662 3.62491 4.00297 4.41319 4.43359 4.60906 4.72336 4.91065 5.24132 5.29745 5.37985 5.44630 5.46717 5.51798 5.63186 5.66837 5.80505 5.85596 5.92074 6.03232 6.15810 6.25434 6.33118 6.43347 6.63791 6.73261 6.81569 6.86220 7.00568 7.35497 7.47097 7.49024 7.89162 8.25582 8.55581 8.76234 9.09220 9.56499 11.05808 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.006112 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.102416 B = 4580.306518 C = 5252.784711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.220 3.780 10 H 0.013 0.987 11 C -0.145 4.145 12 C -0.120 4.120 13 C -0.136 4.136 14 C 0.162 3.838 15 H 0.041 0.959 16 C 0.024 3.976 17 C 0.004 3.996 18 N -0.484 5.484 19 C 0.165 3.835 20 N -0.477 5.477 21 C 0.102 3.898 22 C -0.128 4.128 23 C -0.035 4.035 24 O -0.342 6.342 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.177 0.823 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 -12.381 2.745 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.165 3.835 10 H 0.030 0.970 11 C -0.182 4.182 12 C -0.157 4.157 13 C -0.174 4.174 14 C 0.101 3.899 15 H 0.059 0.941 16 C -0.089 4.089 17 C -0.143 4.143 18 N -0.204 5.204 19 C -0.096 4.096 20 N -0.163 5.163 21 C -0.020 4.020 22 C -0.166 4.166 23 C -0.074 4.074 24 O -0.261 6.261 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.264 -11.918 3.457 14.909 hybrid contribution 0.468 0.501 -1.122 1.315 sum -7.796 -11.417 2.335 14.020 Atomic orbital electron populations 1.70033 1.06092 1.26597 1.46623 1.25080 0.94762 0.99351 0.93589 0.86602 0.80083 0.83291 0.78042 1.20586 1.21066 1.19623 1.20980 0.92699 0.89517 1.53152 0.91640 1.19750 0.86920 0.92315 0.84501 0.96968 1.22272 0.99653 0.95005 1.01316 1.21627 0.98323 0.98662 0.97109 1.22127 0.98536 0.97415 0.99321 1.19790 0.90849 0.88755 0.90461 0.94098 1.20759 0.84329 1.04781 0.99014 1.22033 0.99108 1.04311 0.88850 1.69840 1.00098 1.17531 1.32884 1.24114 0.97834 1.04046 0.83637 1.46120 1.12167 1.44596 1.13439 1.22291 0.87540 0.96898 0.95296 1.22706 0.99992 0.99626 0.94283 1.20540 0.88860 0.98384 0.99646 1.88418 1.57310 1.34073 1.46299 0.92954 0.92301 0.92219 0.92770 0.92850 0.91238 0.93107 0.80631 0.89588 0.89471 0.89693 0.88376 0.88954 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 12.84 55.43 0.71 -24.90 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.77 8.79 -34.44 -0.30 -15.07 16 8 H 0.07 1.78 7.74 -52.48 -0.41 1.37 16 9 C 0.22 5.67 2.50 -27.84 -0.07 5.60 16 10 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 11 C -0.14 -3.03 5.36 -26.59 -0.14 -3.17 16 12 C -0.12 -2.10 6.03 -26.55 -0.16 -2.26 16 13 C -0.14 -2.44 5.40 -26.59 -0.14 -2.59 16 14 C 0.16 3.45 3.17 -27.83 -0.09 3.36 16 15 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 16 C 0.02 0.49 6.31 -81.49 -0.51 -0.03 16 17 C 0.00 0.09 11.44 -17.90 -0.20 -0.12 16 18 N -0.48 -9.97 11.26 -10.56 -0.12 -10.09 16 19 C 0.17 2.83 8.58 -154.86 -1.33 1.50 16 20 N -0.48 -8.20 3.61 -107.74 -0.39 -8.59 16 21 C 0.10 1.18 7.78 -3.04 -0.02 1.16 16 22 C -0.13 -1.03 7.17 -25.19 -0.18 -1.21 16 23 C -0.04 -0.38 6.86 -26.64 -0.18 -0.56 16 24 O -0.34 -8.90 9.14 -35.23 -0.32 -9.22 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.18 3.81 8.06 -52.49 -0.42 3.39 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -33.70 310.59 -9.78 -43.48 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.88 Total: -0.66 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.44 Total: -11.23 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.20 Total: -43.58 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.32 Total: -9.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.70 -9.78 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719152012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.239 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds