Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47264 * 269.99840 * 3 2 1 5 5 H 1.48504 * 109.47213 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47179 * 149.99981 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.48301 * 60.01255 * 9 7 2 11 11 C 1.53086 * 109.49263 * 180.02562 * 9 7 2 12 12 C 1.53181 * 109.16648 * 177.59383 * 11 9 7 13 13 C 1.53175 * 109.03363 * 303.01786 * 12 11 9 14 14 C 1.53094 * 109.16489 * 56.97988 * 13 12 11 15 15 H 1.09007 * 109.48981 * 62.37893 * 14 13 12 16 16 C 1.50702 * 109.47981 * 182.40595 * 14 13 12 17 17 C 1.34558 * 126.57810 * 84.97103 * 16 14 13 18 18 N 1.34014 * 108.02660 * 179.97438 * 17 16 14 19 19 C 1.30905 * 109.30086 * 0.08681 * 18 17 16 20 20 N 1.34814 * 108.61190 * 359.82532 * 19 18 17 21 21 C 1.47004 * 111.17949 * 180.25428 * 20 19 18 22 22 C 1.54385 * 105.53352 * 342.89389 * 21 20 19 23 23 C 1.51570 * 141.44119 * 179.79441 * 19 18 17 24 24 O 1.42906 * 109.47444 * 299.99344 * 9 7 2 25 25 H 0.96992 * 119.99827 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52480 * 297.49804 * 11 9 7 27 27 H 1.09000 * 109.52331 * 57.68367 * 11 9 7 28 28 H 1.09002 * 109.54136 * 62.88343 * 12 11 9 29 29 H 1.09003 * 109.54392 * 183.15104 * 12 11 9 30 30 H 1.08997 * 109.52543 * 297.07319 * 13 12 11 31 31 H 1.09001 * 109.52237 * 176.88470 * 13 12 11 32 32 H 1.07996 * 125.98770 * 0.25934 * 17 16 14 33 33 H 1.09003 * 110.23694 * 223.87848 * 21 20 19 34 34 H 1.09005 * 110.23816 * 101.90894 * 21 20 19 35 35 H 1.09001 * 110.96994 * 267.60046 * 22 21 20 36 36 H 1.08995 * 110.97409 * 143.83457 * 22 21 20 37 37 H 1.08997 * 110.47875 * 315.27106 * 23 19 18 38 38 H 1.09000 * 110.47625 * 77.76246 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5574 -0.8897 11 6 2.2455 -3.6631 0.0018 12 6 1.4731 -4.9844 0.0626 13 6 0.5781 -4.9832 1.3056 14 6 -0.3520 -3.7682 1.2541 15 1 -0.9997 -3.8429 0.3804 16 6 -1.1950 -3.7273 2.5026 17 6 -0.8496 -3.1882 3.6860 18 7 -1.8738 -3.3573 4.5336 19 6 -2.8446 -3.9849 3.9193 20 7 -2.4624 -4.2314 2.6502 21 6 -3.5177 -4.9322 1.9044 22 6 -4.4751 -5.4977 2.9754 23 6 -4.2419 -4.5238 4.1525 24 8 0.4292 -2.5748 1.1671 25 1 -0.4849 0.8400 0.0004 26 1 2.8435 -3.6323 -0.9090 27 1 2.8990 -3.5829 0.8705 28 1 0.8567 -5.0878 -0.8305 29 1 2.1761 -5.8155 0.1202 30 1 1.1978 -4.9297 2.2007 31 1 -0.0166 -5.8964 1.3273 32 1 0.0870 -2.7002 3.9119 33 1 -3.0886 -5.7434 1.3162 34 1 -4.0476 -4.2347 1.2555 35 1 -4.1962 -6.5150 3.2498 36 1 -5.5096 -5.4569 2.6345 37 1 -4.2921 -5.0553 5.1028 38 1 -4.9715 -3.7142 4.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719152012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = -5.366640 kcal Electronic energy + Delta-G solvation = -20222.191347 eV Core-core repulsion = 17257.596571 eV Total energy + Delta-G solvation = -2964.594776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41626 -39.90127 -37.22375 -35.05472 -34.20154 -33.35908 -31.77366 -29.34553 -28.36210 -27.24551 -25.04195 -23.64708 -23.01146 -21.65211 -20.72353 -20.61891 -18.72703 -17.73717 -17.03081 -16.68991 -16.49562 -16.06630 -15.54546 -15.28816 -14.81100 -14.73691 -14.64904 -14.24883 -14.15467 -13.90505 -13.30462 -13.09436 -12.86762 -12.74856 -12.56627 -12.45847 -12.16800 -11.93426 -11.88575 -11.84759 -11.57982 -11.00134 -10.82458 -10.60291 -10.47642 -9.86894 -9.15128 -8.17958 -6.38178 1.01511 1.38425 1.41316 1.51672 1.75951 2.11505 2.38822 2.95672 3.00416 3.39783 3.63319 3.84328 3.87773 3.99540 4.02777 4.07379 4.22571 4.38507 4.40371 4.42151 4.56809 4.62892 4.72882 4.81675 4.87606 4.95190 5.00610 5.01936 5.11686 5.15166 5.15956 5.23117 5.41967 5.56455 5.74840 5.84896 6.17055 6.17472 6.63705 7.06945 7.18774 7.38388 8.89574 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.006112 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.102416 B = 4580.306518 C = 5252.784711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.217 3.783 10 H -0.019 1.019 11 C -0.138 4.138 12 C -0.112 4.112 13 C -0.125 4.125 14 C 0.161 3.839 15 H 0.031 0.969 16 C 0.004 3.996 17 C -0.024 4.024 18 N -0.525 5.525 19 C 0.172 3.828 20 N -0.480 5.480 21 C 0.084 3.916 22 C -0.106 4.106 23 C -0.036 4.036 24 O -0.376 6.376 25 H 0.260 0.740 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 -14.437 2.660 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.086 0.914 9 C 0.161 3.839 10 H -0.002 1.002 11 C -0.175 4.175 12 C -0.149 4.149 13 C -0.163 4.163 14 C 0.101 3.899 15 H 0.048 0.952 16 C -0.110 4.110 17 C -0.171 4.171 18 N -0.246 5.246 19 C -0.091 4.091 20 N -0.166 5.166 21 C -0.036 4.036 22 C -0.144 4.144 23 C -0.075 4.075 24 O -0.295 6.295 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.133 0.867 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.493 -14.002 3.349 17.245 hybrid contribution 0.750 1.096 -1.080 1.712 sum -8.743 -12.905 2.269 15.753 Atomic orbital electron populations 1.70180 1.07774 1.27276 1.48213 1.25962 0.95579 1.03149 0.93147 0.85522 0.78725 0.78538 0.78633 1.19114 1.21236 1.18827 1.21446 0.93177 0.91124 1.52862 0.91375 1.19642 0.87323 0.93640 0.83278 1.00179 1.22127 0.98756 0.95166 1.01499 1.21604 0.98614 0.97651 0.97075 1.22035 0.98130 0.96852 0.99296 1.19921 0.91030 0.88498 0.90428 0.95153 1.20603 0.86213 1.06008 0.98173 1.21883 0.99422 1.05636 0.90181 1.69769 1.01096 1.19887 1.33800 1.25419 0.99152 1.01220 0.83298 1.46470 1.11522 1.44229 1.14333 1.22848 0.86890 0.97183 0.96639 1.22805 1.01070 0.99311 0.91204 1.20943 0.84879 0.99604 1.02059 1.88302 1.58245 1.37055 1.45919 0.93167 0.91324 0.92774 0.92053 0.89215 0.91938 0.90110 0.82768 0.88037 0.89150 0.87870 0.84404 0.86742 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.79 12.84 21.45 0.28 -55.52 16 2 C 0.02 1.41 5.40 84.66 0.46 1.87 16 3 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.55 -31.80 8.79 25.60 0.23 -31.58 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.22 11.57 2.50 29.88 0.07 11.64 16 10 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 11 C -0.14 -5.77 5.36 30.68 0.16 -5.61 16 12 C -0.11 -3.74 6.03 30.71 0.19 -3.55 16 13 C -0.13 -4.39 5.40 30.68 0.17 -4.23 16 14 C 0.16 7.05 3.17 29.88 0.09 7.15 16 15 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 16 C 0.00 0.17 6.31 40.88 0.26 0.43 16 17 C -0.02 -1.11 11.44 83.52 0.96 -0.15 16 18 N -0.53 -22.26 11.26 -187.33 -2.11 -24.36 16 19 C 0.17 5.75 8.58 138.36 1.19 6.93 16 20 N -0.48 -16.15 3.61 -494.78 -1.79 -17.94 16 21 C 0.08 1.72 7.78 86.75 0.67 2.40 16 22 C -0.11 -1.19 7.17 31.59 0.23 -0.97 16 23 C -0.04 -0.65 6.86 30.65 0.21 -0.44 16 24 O -0.38 -20.52 9.14 -148.98 -1.36 -21.88 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.15 7.39 8.06 -2.91 -0.02 7.36 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.66 310.59 2.96 -75.71 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.03 Total: 12.75 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.88 Total: -16.10 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.62 Total: -97.82 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.36 Total: -21.88 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.66 2.96 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719152012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.341 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds