Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.48452 * 60.01892 * 9 7 2 11 11 C 1.53091 * 109.48084 * 180.02562 * 9 7 2 12 12 C 1.53178 * 109.16124 * 62.37589 * 11 9 7 13 13 C 1.53172 * 109.03913 * 56.98187 * 12 11 9 14 14 C 1.53094 * 109.16321 * 303.01436 * 13 12 11 15 15 H 1.08994 * 109.48387 * 297.62958 * 14 13 12 16 16 C 1.50698 * 109.48130 * 177.59091 * 14 13 12 17 17 C 1.34564 * 126.58292 * 85.08813 * 16 14 13 18 18 N 1.33996 * 108.03277 * 180.02562 * 17 16 14 19 19 C 1.30903 * 109.30533 * 0.09496 * 18 17 16 20 20 N 1.34815 * 108.60931 * 359.53992 * 19 18 17 21 21 C 1.47008 * 111.18290 * 180.02562 * 20 19 18 22 22 C 1.54378 * 105.59656 * 343.29519 * 21 20 19 23 23 C 1.51564 * 141.44949 * 179.78283 * 19 18 17 24 24 O 1.42905 * 109.48022 * 300.00245 * 9 7 2 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52051 * 182.27767 * 11 9 7 27 27 H 1.08994 * 109.52318 * 302.46785 * 11 9 7 28 28 H 1.08992 * 109.54563 * 297.11082 * 12 11 9 29 29 H 1.09000 * 109.61332 * 176.89170 * 12 11 9 30 30 H 1.09005 * 109.52471 * 183.11272 * 13 12 11 31 31 H 1.09001 * 109.57991 * 62.95303 * 13 12 11 32 32 H 1.08005 * 125.98021 * 0.05144 * 17 16 14 33 33 H 1.09002 * 110.39581 * 224.14862 * 21 20 19 34 34 H 1.09001 * 110.00582 * 102.23095 * 21 20 19 35 35 H 1.08999 * 110.97031 * 267.37269 * 22 21 20 36 36 H 1.09003 * 110.97086 * 143.61291 * 22 21 20 37 37 H 1.08998 * 110.47866 * 315.24203 * 23 19 18 38 38 H 1.09000 * 110.48080 * 77.73158 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6241 -2.5571 -0.8904 11 6 2.2455 -3.6630 -0.0005 12 6 3.0822 -3.6093 1.2815 13 6 2.1444 -3.6461 2.4920 14 6 1.1537 -2.4829 2.3958 15 1 1.6975 -1.5388 2.4272 16 6 0.1899 -2.5467 3.5525 17 6 0.3824 -2.0435 4.7856 18 7 -0.7082 -2.3097 5.5172 19 6 -1.5729 -2.9631 4.7831 20 7 -1.0550 -3.1235 3.5487 21 6 -1.9839 -3.8533 2.6737 22 6 -3.0057 -4.5216 3.6184 23 6 -2.9504 -3.5916 4.8514 24 8 0.4296 -2.5753 1.1665 25 1 -0.4850 0.8401 0.0004 26 1 1.7017 -4.6068 -0.0414 27 1 2.9014 -3.5816 -0.8672 28 1 3.6640 -2.6879 1.2988 29 1 3.7551 -4.4662 1.3153 30 1 2.7280 -3.5526 3.4079 31 1 1.5985 -4.5895 2.5027 32 1 1.2619 -1.5169 5.1258 33 1 -1.4496 -4.6104 2.0997 34 1 -2.4889 -3.1578 2.0033 35 1 -2.6932 -5.5329 3.8784 36 1 -4.0020 -4.5244 3.1763 37 1 -3.0612 -4.1685 5.7695 38 1 -3.7228 -2.8251 4.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719152016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = 12.977182 kcal Electronic energy + Delta-G solvation = -20737.093181 eV Core-core repulsion = 17773.293853 eV Total energy + Delta-G solvation = -2963.799328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92855 -38.17320 -35.99892 -32.80668 -32.47509 -31.58360 -30.22184 -27.93516 -26.89545 -25.39029 -23.13625 -22.20964 -21.84410 -19.95617 -19.38873 -18.85406 -16.49032 -16.31408 -15.63206 -14.74778 -14.39144 -14.34625 -14.03761 -13.75241 -13.40249 -13.29152 -13.08176 -12.96837 -12.63496 -11.95101 -11.86542 -11.62540 -11.41794 -11.27524 -10.97387 -10.92603 -10.68359 -10.43790 -10.25540 -9.96385 -9.75399 -9.39674 -8.99442 -8.80711 -8.51541 -8.01308 -7.51569 -6.04873 -4.20371 2.60389 3.27331 3.30586 3.33710 3.34992 3.61156 4.18545 4.36720 4.62947 4.85533 4.94169 5.00586 5.31066 5.50750 5.63466 5.65096 5.71085 5.73666 5.76407 5.79957 5.90850 6.04671 6.08360 6.14448 6.29175 6.36660 6.43660 6.64693 6.78667 6.85612 6.96278 6.96885 7.10501 7.38844 7.57460 7.64240 7.81070 8.14068 8.62437 8.73431 8.97612 9.52563 10.99339 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.007415 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.637608 B = 3775.341987 C = 4133.713287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.214 3.786 10 H 0.061 0.939 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.134 4.134 14 C 0.174 3.826 15 H 0.084 0.916 16 C 0.042 3.958 17 C -0.039 4.039 18 N -0.483 5.483 19 C 0.156 3.844 20 N -0.451 5.451 21 C 0.112 3.888 22 C -0.131 4.131 23 C -0.034 4.034 24 O -0.371 6.371 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.169 0.831 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 -8.899 5.190 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.158 3.842 10 H 0.078 0.922 11 C -0.180 4.180 12 C -0.146 4.146 13 C -0.172 4.172 14 C 0.114 3.886 15 H 0.102 0.898 16 C -0.073 4.073 17 C -0.186 4.186 18 N -0.203 5.203 19 C -0.106 4.106 20 N -0.134 5.134 21 C -0.010 4.010 22 C -0.169 4.169 23 C -0.073 4.073 24 O -0.290 6.290 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.909 -8.643 5.744 11.090 hybrid contribution 1.016 0.913 -0.946 1.661 sum -2.894 -7.730 4.799 9.548 Atomic orbital electron populations 1.70029 1.05904 1.26563 1.46853 1.25022 0.94673 0.99011 0.93859 0.86802 0.79865 0.83447 0.78787 1.21230 1.20009 1.20139 1.21482 0.93143 0.91018 1.54262 0.92400 1.19705 0.88572 0.91095 0.84783 0.92167 1.22183 0.99296 0.99481 0.97010 1.21444 0.97320 1.01049 0.94772 1.22093 0.97979 0.98893 0.98251 1.19960 0.88488 0.97722 0.82388 0.89808 1.21253 0.85985 1.02071 0.98011 1.21835 0.98763 1.07704 0.90317 1.69745 1.01436 1.16484 1.32618 1.24102 0.97823 1.04708 0.83946 1.46021 1.13140 1.41649 1.12570 1.22222 0.89697 0.96235 0.92805 1.22754 0.99918 0.99201 0.95073 1.20518 0.89614 0.97843 0.99313 1.87901 1.35008 1.93612 1.12479 0.92968 0.94260 0.92410 0.91047 0.93872 0.92302 0.93163 0.81371 0.89349 0.88996 0.89973 0.88516 0.89235 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 12.84 55.43 0.71 -23.84 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 3 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.56 -14.70 6.59 -34.44 -0.23 -14.93 16 8 H 0.06 1.49 6.87 -52.49 -0.36 1.13 16 9 C 0.21 5.21 3.16 -27.84 -0.09 5.13 16 10 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 11 C -0.14 -2.87 5.59 -26.59 -0.15 -3.01 16 12 C -0.11 -2.02 5.78 -26.55 -0.15 -2.17 16 13 C -0.13 -2.51 5.40 -26.59 -0.14 -2.66 16 14 C 0.17 3.82 2.85 -27.84 -0.08 3.74 16 15 H 0.08 2.05 7.09 -51.93 -0.37 1.68 16 16 C 0.04 0.89 6.19 -81.49 -0.50 0.39 16 17 C -0.04 -0.78 11.78 -17.91 -0.21 -1.00 16 18 N -0.48 -9.83 11.26 -10.56 -0.12 -9.95 16 19 C 0.16 2.82 8.58 -154.86 -1.33 1.50 16 20 N -0.45 -8.58 3.53 -107.74 -0.38 -8.96 16 21 C 0.11 1.70 7.34 -3.04 -0.02 1.67 16 22 C -0.13 -1.36 7.17 -25.20 -0.18 -1.54 16 23 C -0.03 -0.41 6.86 -26.65 -0.18 -0.60 16 24 O -0.37 -9.03 9.12 -35.23 -0.32 -9.35 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.40 6.85 -51.93 -0.36 1.05 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.17 3.02 8.06 -52.48 -0.42 2.60 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -31.30 305.19 -9.61 -40.91 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.72 Total: 2.04 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.37 Total: -11.39 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.21 Total: -42.75 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.32 Total: -9.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.30 -9.61 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719152016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.889 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds