Wall clock time and date at job start Mon Mar 30 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.48452 * 60.01892 * 9 7 2 11 11 C 1.53091 * 109.48084 * 180.02562 * 9 7 2 12 12 C 1.53178 * 109.16124 * 62.37589 * 11 9 7 13 13 C 1.53172 * 109.03913 * 56.98187 * 12 11 9 14 14 C 1.53094 * 109.16321 * 303.01436 * 13 12 11 15 15 H 1.08994 * 109.48387 * 297.62958 * 14 13 12 16 16 C 1.50698 * 109.48130 * 177.59091 * 14 13 12 17 17 C 1.34564 * 126.58292 * 85.08813 * 16 14 13 18 18 N 1.33996 * 108.03277 * 180.02562 * 17 16 14 19 19 C 1.30903 * 109.30533 * 0.09496 * 18 17 16 20 20 N 1.34815 * 108.60931 * 359.53992 * 19 18 17 21 21 C 1.47008 * 111.18290 * 180.02562 * 20 19 18 22 22 C 1.54378 * 105.59656 * 343.29519 * 21 20 19 23 23 C 1.51564 * 141.44949 * 179.78283 * 19 18 17 24 24 O 1.42905 * 109.48022 * 300.00245 * 9 7 2 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52051 * 182.27767 * 11 9 7 27 27 H 1.08994 * 109.52318 * 302.46785 * 11 9 7 28 28 H 1.08992 * 109.54563 * 297.11082 * 12 11 9 29 29 H 1.09000 * 109.61332 * 176.89170 * 12 11 9 30 30 H 1.09005 * 109.52471 * 183.11272 * 13 12 11 31 31 H 1.09001 * 109.57991 * 62.95303 * 13 12 11 32 32 H 1.08005 * 125.98021 * 0.05144 * 17 16 14 33 33 H 1.09002 * 110.39581 * 224.14862 * 21 20 19 34 34 H 1.09001 * 110.00582 * 102.23095 * 21 20 19 35 35 H 1.08999 * 110.97031 * 267.37269 * 22 21 20 36 36 H 1.09003 * 110.97086 * 143.61291 * 22 21 20 37 37 H 1.08998 * 110.47866 * 315.24203 * 23 19 18 38 38 H 1.09000 * 110.48080 * 77.73158 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6241 -2.5571 -0.8904 11 6 2.2455 -3.6630 -0.0005 12 6 3.0822 -3.6093 1.2815 13 6 2.1444 -3.6461 2.4920 14 6 1.1537 -2.4829 2.3958 15 1 1.6975 -1.5388 2.4272 16 6 0.1899 -2.5467 3.5525 17 6 0.3824 -2.0435 4.7856 18 7 -0.7082 -2.3097 5.5172 19 6 -1.5729 -2.9631 4.7831 20 7 -1.0550 -3.1235 3.5487 21 6 -1.9839 -3.8533 2.6737 22 6 -3.0057 -4.5216 3.6184 23 6 -2.9504 -3.5916 4.8514 24 8 0.4296 -2.5753 1.1665 25 1 -0.4850 0.8401 0.0004 26 1 1.7017 -4.6068 -0.0414 27 1 2.9014 -3.5816 -0.8672 28 1 3.6640 -2.6879 1.2988 29 1 3.7551 -4.4662 1.3153 30 1 2.7280 -3.5526 3.4079 31 1 1.5985 -4.5895 2.5027 32 1 1.2619 -1.5169 5.1258 33 1 -1.4496 -4.6104 2.0997 34 1 -2.4889 -3.1578 2.0033 35 1 -2.6932 -5.5329 3.8784 36 1 -4.0020 -4.5244 3.1763 37 1 -3.0612 -4.1685 5.7695 38 1 -3.7228 -2.8251 4.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719152016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:10 Heat of formation + Delta-G solvation = -5.328848 kcal Electronic energy + Delta-G solvation = -20737.886990 eV Core-core repulsion = 17773.293853 eV Total energy + Delta-G solvation = -2964.593137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.34259 -39.92383 -37.20548 -34.75451 -34.15110 -33.22744 -31.68841 -29.37207 -28.30216 -27.21452 -24.77769 -23.94694 -22.97278 -21.32000 -20.98553 -20.47537 -18.34394 -17.67271 -17.14827 -16.67547 -16.11917 -15.90939 -15.48800 -15.30650 -14.83182 -14.77633 -14.55655 -14.19320 -14.09431 -13.66223 -13.25439 -13.06753 -13.03884 -12.80795 -12.54859 -12.40498 -12.31874 -11.93825 -11.82928 -11.60710 -11.54307 -10.93929 -10.76699 -10.53124 -10.41317 -9.79971 -9.05673 -8.13424 -6.33443 1.12637 1.37018 1.38198 1.44823 1.97437 2.12309 2.37304 2.99976 3.07841 3.41928 3.60361 3.86009 3.93885 4.07286 4.14834 4.19693 4.43305 4.48679 4.50782 4.60588 4.65533 4.66769 4.78739 4.89142 4.91699 5.00518 5.03858 5.14095 5.16529 5.22570 5.33007 5.43612 5.49199 5.65145 5.75438 5.91668 6.12415 6.23275 6.72402 7.04879 7.16150 7.43483 8.90152 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.007415 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.637608 B = 3775.341987 C = 4133.713287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.290 1.290 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.562 4.562 8 H 0.060 0.940 9 C 0.208 3.792 10 H 0.028 0.972 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.124 4.124 14 C 0.179 3.821 15 H 0.049 0.951 16 C 0.008 3.992 17 C -0.047 4.047 18 N -0.515 5.515 19 C 0.160 3.840 20 N -0.463 5.463 21 C 0.100 3.900 22 C -0.108 4.108 23 C -0.033 4.033 24 O -0.387 6.387 25 H 0.256 0.744 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.179 0.821 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -10.467 6.042 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.600 4.600 8 H 0.078 0.922 9 C 0.152 3.848 10 H 0.046 0.954 11 C -0.172 4.172 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.119 3.881 15 H 0.067 0.933 16 C -0.108 4.108 17 C -0.194 4.194 18 N -0.235 5.235 19 C -0.103 4.103 20 N -0.145 5.145 21 C -0.020 4.020 22 C -0.146 4.146 23 C -0.072 4.072 24 O -0.306 6.306 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.196 0.804 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.089 -10.224 6.582 12.829 hybrid contribution 1.029 1.378 -1.204 2.099 sum -3.060 -8.847 5.378 10.796 Atomic orbital electron populations 1.70168 1.07346 1.26851 1.48800 1.25742 0.95326 1.02224 0.93834 0.85883 0.78679 0.79644 0.79142 1.21546 1.19574 1.19005 1.21791 0.93323 0.91994 1.52869 0.92165 1.19628 0.88745 0.92364 0.84041 0.95416 1.22057 0.98650 0.98115 0.98381 1.21428 0.97261 1.01910 0.93540 1.22006 0.97392 0.97567 0.99255 1.19873 0.89089 0.97435 0.81696 0.93340 1.21213 0.87458 1.04182 0.97916 1.22114 0.99442 1.07479 0.90401 1.69753 1.02108 1.18196 1.33451 1.25318 0.99250 1.02605 0.83138 1.46346 1.12767 1.41687 1.13686 1.22530 0.90108 0.95726 0.93671 1.22815 1.00081 0.99056 0.92672 1.20866 0.86329 0.98581 1.01424 1.87834 1.35814 1.93739 1.13254 0.93480 0.92858 0.91698 0.92403 0.90337 0.90510 0.92587 0.80412 0.89661 0.90802 0.87946 0.84974 0.86496 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.99 12.84 21.45 0.28 -52.72 16 2 C 0.03 1.73 5.40 84.66 0.46 2.19 16 3 Si 0.94 43.76 29.54 68.60 2.03 45.78 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.56 -30.00 6.59 25.60 0.17 -29.83 16 8 H 0.06 3.12 6.87 -2.91 -0.02 3.10 16 9 C 0.21 10.38 3.16 29.88 0.09 10.47 16 10 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 11 C -0.13 -5.31 5.59 30.68 0.17 -5.14 16 12 C -0.10 -3.69 5.78 30.71 0.18 -3.52 16 13 C -0.12 -4.54 5.40 30.68 0.17 -4.37 16 14 C 0.18 7.99 2.85 29.88 0.09 8.08 16 15 H 0.05 2.48 7.09 -2.39 -0.02 2.46 16 16 C 0.01 0.34 6.19 40.88 0.25 0.60 16 17 C -0.05 -1.94 11.78 83.52 0.98 -0.96 16 18 N -0.52 -20.82 11.26 -187.33 -2.11 -22.93 16 19 C 0.16 5.59 8.58 138.36 1.19 6.77 16 20 N -0.46 -17.46 3.53 -494.79 -1.75 -19.21 16 21 C 0.10 2.94 7.34 86.75 0.64 3.58 16 22 C -0.11 -1.86 7.17 31.59 0.23 -1.63 16 23 C -0.03 -0.70 6.86 30.65 0.21 -0.49 16 24 O -0.39 -19.39 9.12 -148.98 -1.36 -20.75 16 25 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.21 6.85 -2.39 -0.02 2.19 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.18 6.57 8.06 -2.91 -0.02 6.55 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -70.18 305.19 2.94 -67.24 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.04 Total: 16.83 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.82 Total: -14.25 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.58 Total: -94.85 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.36 Total: -20.75 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.18 2.94 -67.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719152016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.911 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds