Wall clock time and date at job start Mon Mar 30 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.50694 * 109.46988 * 239.99751 * 2 1 3 5 5 H 1.08005 * 120.00161 * 239.99739 * 4 2 1 6 6 C 1.37880 * 120.00233 * 60.00147 * 4 2 1 7 7 N 1.31511 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47151 * 89.99970 * 8 6 4 10 10 H 1.48503 * 109.46735 * 209.99865 * 8 6 4 11 11 H 1.48499 * 109.47065 * 329.99602 * 8 6 4 12 12 N 1.46502 * 109.47264 * 119.99671 * 2 1 3 13 13 N 1.40100 * 120.00136 * 269.99997 * 12 2 1 14 14 C 1.30008 * 120.00189 * 180.02562 * 13 12 2 15 15 C 1.46706 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.36417 * 125.97617 * 359.97438 * 15 14 13 17 17 C 1.40800 * 106.71339 * 179.78533 * 16 15 14 18 18 C 1.34802 * 107.09299 * 0.34909 * 17 16 15 19 19 C 1.50693 * 125.62618 * 179.90806 * 18 17 16 20 20 H 1.08997 * 115.56818 * 334.03172 * 19 18 17 21 21 C 1.52999 * 117.50007 * 188.33804 * 19 18 17 22 22 C 1.52994 * 60.00325 * 252.51094 * 21 19 18 23 23 H 1.08994 * 117.52046 * 252.51838 * 22 21 19 24 24 C 1.53006 * 117.50121 * 107.48712 * 22 21 19 25 25 O 1.34363 * 108.74358 * 359.64397 * 18 17 16 26 26 H 1.09000 * 109.47463 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46915 * 300.00369 * 1 2 3 28 28 H 1.08995 * 109.47226 * 60.00101 * 1 2 3 29 29 H 0.96999 * 120.00056 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00185 * 89.99765 * 12 2 1 31 31 H 1.07999 * 119.99872 * 359.97438 * 14 13 12 32 32 H 1.07996 * 126.64079 * 0.02562 * 16 15 14 33 33 H 1.07998 * 126.45657 * 180.24786 * 17 16 15 34 34 H 1.09000 * 117.50261 * 145.02026 * 21 19 18 35 35 H 1.09002 * 117.49742 * 0.02562 * 21 19 18 36 36 H 1.09001 * 109.47002 * 351.37657 * 24 22 21 37 37 H 1.08993 * 109.46955 * 111.38094 * 24 22 21 38 38 H 1.09000 * 109.47050 * 231.37923 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.3426 -2.1619 -4.4117 10 1 2.4865 -0.1416 -5.1122 11 1 3.6292 -1.7585 -3.7121 12 7 2.0183 -0.6905 1.1962 13 7 2.2519 0.0300 2.3748 14 6 2.6857 -0.5827 3.4362 15 6 2.9297 0.1718 4.6705 16 6 2.7440 1.5126 4.8401 17 6 3.0945 1.8047 6.1721 18 6 3.4800 0.6461 6.7435 19 6 3.9441 0.4816 8.1677 20 1 4.3788 1.3697 8.6264 21 6 4.5231 -0.8764 8.5696 22 6 3.1392 -0.4568 9.0691 23 1 3.0441 -0.1858 10.1205 24 6 1.9246 -1.1563 8.4555 25 8 3.3765 -0.3386 5.8352 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7087 1.1611 -3.4844 30 1 2.1800 -1.6467 1.1723 31 1 2.8657 -1.6472 3.4095 32 1 2.3923 2.2136 4.0976 33 1 3.0624 2.7744 6.6463 34 1 5.3389 -0.8817 9.2926 35 1 4.5687 -1.6506 7.8037 36 1 2.2456 -1.7703 7.6140 37 1 1.4514 -1.7883 9.2068 38 1 1.2116 -0.4084 8.1084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:41 Heat of formation + Delta-G solvation = 73.700875 kcal Electronic energy + Delta-G solvation = -18560.055990 eV Core-core repulsion = 15598.889839 eV Total energy + Delta-G solvation = -2961.166151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30349 -37.90366 -36.55120 -34.17953 -32.74559 -31.61409 -29.67371 -28.58827 -26.93239 -25.28135 -23.73609 -21.75245 -21.58510 -20.54030 -20.05621 -19.54885 -17.15843 -16.34576 -16.20432 -15.80543 -15.45640 -15.04103 -14.56040 -13.55569 -13.33522 -13.05392 -12.74756 -12.62191 -12.59621 -12.52154 -12.22413 -11.87140 -11.64020 -11.54441 -11.10418 -10.92814 -10.75377 -10.62520 -10.30114 -10.26277 -10.22981 -9.66534 -9.60302 -9.08520 -8.59823 -8.29788 -6.80571 -6.17933 -4.26697 1.47048 2.52390 2.73223 3.22099 3.28931 3.31806 3.47944 3.64656 3.92252 4.32416 4.40306 4.49264 4.69814 5.03906 5.10595 5.14844 5.24139 5.32471 5.49565 5.57633 5.65394 5.76775 5.84411 5.86938 6.08556 6.11517 6.22643 6.36389 6.53717 6.77225 6.85140 6.95098 7.08741 7.37119 7.53861 7.71987 7.79590 8.07151 8.22200 8.79656 9.17779 9.40212 10.88003 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045438 B = 0.003101 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.079107 B = 9028.245258 C = 9126.420980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.296 3.704 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.612 5.612 13 N -0.175 5.175 14 C 0.014 3.986 15 C 0.065 3.935 16 C -0.186 4.186 17 C -0.197 4.197 18 C 0.009 3.991 19 C -0.076 4.076 20 H 0.132 0.868 21 C -0.169 4.169 22 C -0.141 4.141 23 H 0.110 0.890 24 C -0.126 4.126 25 O -0.172 6.172 26 H 0.027 0.973 27 H 0.014 0.986 28 H 0.092 0.908 29 H 0.265 0.735 30 H 0.371 0.629 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -1.572 20.148 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.194 3.806 3 H 0.062 0.938 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.350 5.350 13 N 0.009 4.991 14 C -0.193 4.193 15 C 0.013 3.987 16 C -0.209 4.209 17 C -0.216 4.216 18 C -0.042 4.042 19 C -0.094 4.094 20 H 0.149 0.851 21 C -0.206 4.206 22 C -0.159 4.159 23 H 0.128 0.872 24 C -0.183 4.183 25 O -0.067 6.067 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.207 0.793 31 H 0.126 0.874 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.588 -0.798 19.488 19.831 hybrid contribution 0.538 -1.431 -0.740 1.698 sum 4.126 -2.229 18.748 19.325 Atomic orbital electron populations 1.22217 0.98782 0.99341 1.00716 1.18621 0.90290 0.93699 0.77964 0.93793 1.21218 1.32468 1.13400 0.90107 0.92094 1.24858 0.94776 0.94970 0.98980 1.69884 1.35903 1.22454 1.24032 0.86402 0.79208 0.79272 0.81980 1.20490 1.20966 1.19836 1.49149 1.71534 1.07970 1.06304 1.73901 1.03650 1.27816 0.93779 1.21776 1.11343 0.96385 0.89757 1.19605 1.02899 0.91624 0.84545 1.21854 1.06945 0.95058 0.97078 1.21368 1.06639 0.98498 0.95130 1.21153 1.06344 0.86330 0.90410 1.20543 1.05094 0.96080 0.87677 0.85056 1.23190 0.96639 0.97296 1.03486 1.22502 0.93107 1.01806 0.98496 0.87155 1.21380 0.96234 1.00126 1.00517 1.83935 1.66940 1.36958 1.18908 0.95414 0.96737 0.88999 0.92472 0.79251 0.87382 0.82972 0.83736 0.88193 0.88044 0.91944 0.92161 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 2 C 0.30 7.49 3.23 -69.09 -0.22 7.26 16 3 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.53 -14.19 8.74 -34.44 -0.30 -14.49 16 5 H 0.06 1.58 7.79 -52.48 -0.41 1.18 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.61 -13.50 6.10 -5.88 -0.04 -13.54 16 13 N -0.18 -3.64 11.21 32.01 0.36 -3.28 16 14 C 0.01 0.26 11.05 -14.91 -0.16 0.09 16 15 C 0.06 1.09 7.23 -36.82 -0.27 0.82 16 16 C -0.19 -2.98 10.59 -39.27 -0.42 -3.40 16 17 C -0.20 -2.66 10.77 -39.83 -0.43 -3.09 16 18 C 0.01 0.12 5.89 -35.53 -0.21 -0.09 16 19 C -0.08 -0.73 6.23 -91.77 -0.57 -1.30 16 20 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 21 C -0.17 -1.46 9.81 -26.73 -0.26 -1.72 16 22 C -0.14 -1.20 6.41 -90.62 -0.58 -1.78 16 23 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.13 -1.21 9.15 37.16 0.34 -0.87 16 25 O -0.17 -2.60 9.63 4.20 0.04 -2.56 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.37 7.52 8.58 -182.60 -1.57 5.95 16 31 H 0.11 1.73 8.03 -52.49 -0.42 1.31 16 32 H 0.15 2.46 8.06 -52.49 -0.42 2.04 16 33 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.00 7.86 -51.93 -0.41 0.59 16 36 H 0.06 0.68 7.26 -51.93 -0.38 0.31 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -28.28 327.97 -8.78 -37.06 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.86 Total: 5.84 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.83 Total: -20.21 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.95 Total: -40.66 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.28 -8.78 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.764 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds