Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.50694 * 109.46988 * 239.99751 * 2 1 3 5 5 H 1.08005 * 120.00161 * 239.99739 * 4 2 1 6 6 C 1.37880 * 120.00233 * 60.00147 * 4 2 1 7 7 N 1.31511 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47151 * 89.99970 * 8 6 4 10 10 H 1.48503 * 109.46735 * 209.99865 * 8 6 4 11 11 H 1.48499 * 109.47065 * 329.99602 * 8 6 4 12 12 N 1.46502 * 109.47264 * 119.99671 * 2 1 3 13 13 N 1.40100 * 120.00136 * 269.99997 * 12 2 1 14 14 C 1.30008 * 120.00189 * 180.02562 * 13 12 2 15 15 C 1.46706 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.36417 * 125.97617 * 359.97438 * 15 14 13 17 17 C 1.40800 * 106.71339 * 179.78533 * 16 15 14 18 18 C 1.34802 * 107.09299 * 0.34909 * 17 16 15 19 19 C 1.50693 * 125.62618 * 179.90806 * 18 17 16 20 20 H 1.08997 * 115.56818 * 334.03172 * 19 18 17 21 21 C 1.52999 * 117.50007 * 188.33804 * 19 18 17 22 22 C 1.52994 * 60.00325 * 252.51094 * 21 19 18 23 23 H 1.08994 * 117.52046 * 252.51838 * 22 21 19 24 24 C 1.53006 * 117.50121 * 107.48712 * 22 21 19 25 25 O 1.34363 * 108.74358 * 359.64397 * 18 17 16 26 26 H 1.09000 * 109.47463 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46915 * 300.00369 * 1 2 3 28 28 H 1.08995 * 109.47226 * 60.00101 * 1 2 3 29 29 H 0.96999 * 120.00056 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00185 * 89.99765 * 12 2 1 31 31 H 1.07999 * 119.99872 * 359.97438 * 14 13 12 32 32 H 1.07996 * 126.64079 * 0.02562 * 16 15 14 33 33 H 1.07998 * 126.45657 * 180.24786 * 17 16 15 34 34 H 1.09000 * 117.50261 * 145.02026 * 21 19 18 35 35 H 1.09002 * 117.49742 * 0.02562 * 21 19 18 36 36 H 1.09001 * 109.47002 * 351.37657 * 24 22 21 37 37 H 1.08993 * 109.46955 * 111.38094 * 24 22 21 38 38 H 1.09000 * 109.47050 * 231.37923 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.3426 -2.1619 -4.4117 10 1 2.4865 -0.1416 -5.1122 11 1 3.6292 -1.7585 -3.7121 12 7 2.0183 -0.6905 1.1962 13 7 2.2519 0.0300 2.3748 14 6 2.6857 -0.5827 3.4362 15 6 2.9297 0.1718 4.6705 16 6 2.7440 1.5126 4.8401 17 6 3.0945 1.8047 6.1721 18 6 3.4800 0.6461 6.7435 19 6 3.9441 0.4816 8.1677 20 1 4.3788 1.3697 8.6264 21 6 4.5231 -0.8764 8.5696 22 6 3.1392 -0.4568 9.0691 23 1 3.0441 -0.1858 10.1205 24 6 1.9246 -1.1563 8.4555 25 8 3.3765 -0.3386 5.8352 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7087 1.1611 -3.4844 30 1 2.1800 -1.6467 1.1723 31 1 2.8657 -1.6472 3.4095 32 1 2.3923 2.2136 4.0976 33 1 3.0624 2.7744 6.6463 34 1 5.3389 -0.8817 9.2926 35 1 4.5687 -1.6506 7.8037 36 1 2.2456 -1.7703 7.6140 37 1 1.4514 -1.7883 9.2068 38 1 1.2116 -0.4084 8.1084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = 58.635613 kcal Electronic energy + Delta-G solvation = -18560.709269 eV Core-core repulsion = 15598.889839 eV Total energy + Delta-G solvation = -2961.819430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.47378 -38.67935 -38.17565 -36.00317 -34.01734 -33.34707 -31.05887 -29.53645 -28.39795 -27.31044 -24.98567 -22.88102 -22.66593 -22.12175 -21.27726 -20.65804 -18.90205 -17.63962 -17.45510 -17.19506 -16.85601 -16.43079 -15.80731 -15.24073 -14.54221 -14.36246 -14.12286 -13.99570 -13.79997 -13.64587 -13.40257 -13.27740 -12.93687 -12.75966 -12.71874 -12.56611 -12.32754 -12.25795 -12.11933 -11.49520 -11.25176 -11.02222 -10.94769 -10.79822 -10.59272 -9.63670 -8.36172 -8.18558 -6.37015 0.18228 1.36600 1.40358 1.43413 1.46856 1.55407 2.10214 2.33902 2.56310 2.93629 3.09655 3.52501 3.75264 3.82861 3.99059 4.15181 4.28228 4.46691 4.53452 4.63939 4.76644 4.84241 4.88778 4.91027 4.96606 4.99543 5.08706 5.13413 5.17671 5.18754 5.20636 5.43702 5.48648 5.61628 5.70695 5.82359 6.08464 6.24169 6.34072 6.79548 7.34217 7.60989 8.85557 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045438 B = 0.003101 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.079107 B = 9028.245258 C = 9126.420980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.306 3.694 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.628 5.628 13 N -0.220 5.220 14 C 0.052 3.948 15 C 0.025 3.975 16 C -0.183 4.183 17 C -0.209 4.209 18 C 0.026 3.974 19 C -0.092 4.092 20 H 0.161 0.839 21 C -0.165 4.165 22 C -0.132 4.132 23 H 0.140 0.860 24 C -0.129 4.129 25 O -0.175 6.175 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.268 0.732 30 H 0.377 0.623 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -2.158 22.530 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.203 3.797 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.366 5.366 13 N -0.033 5.033 14 C -0.157 4.157 15 C -0.026 4.026 16 C -0.206 4.206 17 C -0.228 4.228 18 C -0.026 4.026 19 C -0.109 4.109 20 H 0.178 0.822 21 C -0.202 4.202 22 C -0.149 4.149 23 H 0.157 0.843 24 C -0.187 4.187 25 O -0.072 6.072 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.215 0.785 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.191 0.809 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.663 -1.392 21.874 22.409 hybrid contribution 0.269 -1.216 -1.157 1.699 sum 4.932 -2.608 20.718 21.456 Atomic orbital electron populations 1.22038 0.98539 0.99283 0.99847 1.18206 0.90432 0.91797 0.79260 0.97744 1.21512 1.32732 1.13637 0.91031 0.91902 1.25707 0.94828 0.95609 1.01916 1.70009 1.36735 1.23646 1.24790 0.85355 0.78773 0.78173 0.78092 1.19639 1.20663 1.19396 1.48609 1.73820 1.07923 1.06278 1.73909 1.06936 1.28262 0.94155 1.22152 1.06908 0.97357 0.89272 1.19473 1.06087 0.91967 0.85066 1.22047 1.05576 0.94780 0.98222 1.21670 1.07021 1.00102 0.94028 1.22001 1.03520 0.85693 0.91373 1.20895 1.06443 0.97947 0.85630 0.82194 1.23267 0.97646 0.95826 1.03464 1.22620 0.92345 1.00534 0.99441 0.84262 1.21408 0.96789 0.99957 1.00506 1.83946 1.66834 1.37692 1.18682 0.94898 0.96261 0.91032 0.92303 0.78518 0.85575 0.83828 0.80913 0.85542 0.89750 0.93874 0.90405 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.95 9.29 71.98 0.67 -6.28 16 2 C 0.31 16.12 3.23 44.24 0.14 16.26 16 3 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 4 C -0.55 -29.94 8.74 25.60 0.22 -29.72 16 5 H 0.06 3.31 7.79 -2.91 -0.02 3.29 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.67 11.32 21.45 0.24 -51.42 16 8 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.63 -28.61 6.10 -172.53 -1.05 -29.66 16 13 N -0.22 -9.38 11.21 -52.63 -0.59 -9.97 16 14 C 0.05 1.87 11.05 87.18 0.96 2.83 16 15 C 0.03 0.85 7.23 24.06 0.17 1.02 16 16 C -0.18 -5.82 10.59 22.47 0.24 -5.58 16 17 C -0.21 -5.28 10.77 22.11 0.24 -5.04 16 18 C 0.03 0.62 5.89 24.89 0.15 0.77 16 19 C -0.09 -1.45 6.23 -11.54 -0.07 -1.52 16 20 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 21 C -0.17 -2.31 9.81 30.59 0.30 -2.01 16 22 C -0.13 -1.78 6.41 -10.79 -0.07 -1.85 16 23 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 24 C -0.13 -2.24 9.15 71.98 0.66 -1.58 16 25 O -0.18 -5.16 9.63 -7.90 -0.08 -5.24 16 26 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.38 15.66 8.58 -213.32 -1.83 13.83 16 31 H 0.13 3.98 8.03 -2.91 -0.02 3.96 16 32 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 36 H 0.04 0.90 7.26 -2.39 -0.02 0.88 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.38 327.97 3.83 -58.55 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.78 Total: 24.43 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.06 Total: -31.17 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -1.40 Total: -91.06 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.08 Total: -5.24 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -62.38 3.83 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.183 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds