Wall clock time and date at job start Mon Mar 30 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35881 * 116.99873 * 2 1 4 4 C 1.38884 * 119.90127 * 359.97438 * 3 2 1 5 5 C 1.37814 * 120.10124 * 180.02562 * 4 3 2 6 6 C 1.39720 * 119.89946 * 359.97438 * 5 4 3 7 7 C 1.47480 * 120.09739 * 179.97438 * 6 5 4 8 8 N 1.29747 * 120.00334 * 0.02562 * 7 6 5 9 9 N 1.40100 * 120.00093 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99934 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47197 * 29.98909 * 10 9 8 12 12 C 1.53005 * 109.46437 * 269.99419 * 10 9 8 13 13 C 1.50701 * 109.47260 * 149.99904 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.39683 * 119.80128 * 0.25578 * 6 5 4 22 22 C 1.37855 * 119.89802 * 359.51267 * 21 6 5 23 23 C 1.50705 * 119.95109 * 180.23446 * 22 21 6 24 24 H 1.08993 * 109.47137 * 299.99714 * 1 2 3 25 25 H 1.09007 * 109.47099 * 60.00420 * 1 2 3 26 26 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.94789 * 0.02579 * 4 3 2 28 28 H 1.08008 * 120.04951 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.99610 * 180.02562 * 7 6 5 30 30 H 0.96999 * 119.99970 * 359.97438 * 9 8 7 31 31 H 1.08996 * 109.47069 * 60.00420 * 12 10 9 32 32 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 33 33 H 1.08995 * 109.47438 * 299.99560 * 12 10 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.05128 * 179.74251 * 21 6 5 36 36 H 1.09004 * 109.46572 * 270.25462 * 23 22 21 37 37 H 1.08998 * 109.47280 * 30.25330 * 23 22 21 38 38 H 1.09001 * 109.47288 * 150.25466 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2874 2.3742 -0.0005 5 6 1.9088 3.6043 -0.0011 6 6 3.3039 3.6799 -0.0005 7 6 3.9734 4.9940 -0.0017 8 7 3.2667 6.0821 -0.0027 9 7 3.9027 7.3304 -0.0043 10 6 3.1048 8.5591 -0.0049 11 1 2.1608 8.3795 0.5096 12 6 2.8262 8.9854 -1.4477 13 6 3.8636 9.6512 0.7040 14 1 4.8422 9.4501 1.1143 15 6 3.3059 10.9054 0.8341 16 7 2.1142 11.1502 0.3348 17 14 4.2432 12.2570 1.7196 18 1 5.0783 13.0017 0.7432 19 1 3.2807 13.1891 2.3600 20 1 5.1158 11.6549 2.7594 21 6 4.0627 2.5071 -0.0049 22 6 3.4326 1.2810 0.0005 23 6 4.2501 0.0149 0.0012 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2090 2.3148 -0.0005 28 1 1.3181 4.5086 -0.0019 29 1 5.0519 5.0505 -0.0017 30 1 4.8714 7.3812 -0.0043 31 1 2.2774 8.1955 -1.9604 32 1 2.2321 9.8993 -1.4481 33 1 3.7701 9.1650 -1.9622 34 1 1.7217 12.0324 0.4267 35 1 5.1413 2.5608 -0.0087 36 1 4.4475 -0.2905 -1.0264 37 1 5.1946 0.1926 0.5153 38 1 3.6993 -0.7730 0.5150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:11 Heat of formation + Delta-G solvation = 19.017354 kcal Electronic energy + Delta-G solvation = -18500.582799 eV Core-core repulsion = 15537.045393 eV Total energy + Delta-G solvation = -2963.537406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13119 -37.65702 -36.22070 -34.09581 -32.71940 -31.47300 -29.94922 -27.81344 -27.25384 -26.12838 -25.22679 -22.82245 -21.88097 -20.37001 -19.58476 -17.92284 -16.98990 -16.42045 -15.82114 -15.31320 -15.30703 -14.76076 -14.25896 -13.77706 -13.60833 -13.43649 -12.97228 -12.71242 -12.52351 -12.24625 -12.10089 -12.01313 -11.63857 -11.43312 -11.15904 -11.04112 -10.80311 -10.70885 -10.44725 -10.24598 -10.19383 -9.51312 -9.03816 -8.73601 -8.55233 -8.17003 -6.70696 -6.15218 -4.23682 1.28140 1.48548 3.03284 3.23142 3.25361 3.29728 3.32443 3.80507 4.11300 4.35435 4.83207 4.85015 5.01759 5.02915 5.15349 5.17706 5.30852 5.42477 5.44989 5.60636 5.66239 5.70240 5.91199 6.04814 6.20418 6.46830 6.49741 6.70822 6.77578 6.86406 6.98574 7.03090 7.14172 7.41907 7.56362 7.76267 7.84854 8.13731 8.29246 8.84099 9.32964 9.43345 10.90651 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038783 B = 0.003219 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.799416 B = 8695.312661 C = 9071.178724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.112 3.888 4 C -0.202 4.202 5 C -0.066 4.066 6 C -0.037 4.037 7 C -0.010 4.010 8 N -0.197 5.197 9 N -0.624 5.624 10 C 0.297 3.703 11 H 0.041 0.959 12 C -0.150 4.150 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.101 4.101 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.368 0.632 31 H 0.012 0.988 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 -19.628 -1.287 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.066 3.934 4 C -0.220 4.220 5 C -0.086 4.086 6 C -0.039 4.039 7 C -0.218 4.218 8 N -0.009 5.009 9 N -0.360 5.360 10 C 0.195 3.805 11 H 0.059 0.941 12 C -0.210 4.210 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.204 0.796 31 H 0.031 0.969 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.296 -19.068 -1.300 19.156 hybrid contribution 1.406 0.914 0.414 1.728 sum 0.110 -18.154 -0.886 18.175 Atomic orbital electron populations 1.23011 0.78818 1.03488 1.01429 1.86007 1.20968 1.27196 1.89056 1.18852 0.91735 0.83966 0.98797 1.21144 0.99792 0.92205 1.08896 1.21180 0.94074 0.97235 0.96139 1.18335 0.92682 0.91019 1.01881 1.23408 0.96146 0.90368 1.11901 1.73890 1.30021 0.92935 1.04098 1.49056 1.06567 0.99809 1.80572 1.18535 0.91590 0.77437 0.92960 0.94067 1.22207 0.99598 1.01404 0.97748 1.21239 1.03850 0.95110 1.36816 0.92194 1.24859 0.95000 0.98354 0.95424 1.69888 1.15261 1.22468 1.44777 0.86422 0.79498 0.81322 0.79722 1.20516 1.20998 1.19865 1.20849 0.99489 0.90092 0.99460 1.19036 0.90457 0.95824 1.06562 1.20564 0.98692 0.94526 1.01988 0.92727 0.92734 0.88605 0.85651 0.84758 0.88208 0.79554 0.96866 0.89176 0.95512 0.92545 0.85324 0.91702 0.91827 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.69 9.52 -19.37 -0.18 -3.88 16 3 C 0.11 1.46 6.66 -39.12 -0.26 1.20 16 4 C -0.20 -2.66 9.02 -39.50 -0.36 -3.02 16 5 C -0.07 -1.01 9.57 -39.18 -0.38 -1.38 16 6 C -0.04 -0.57 5.87 -105.04 -0.62 -1.18 16 7 C -0.01 -0.17 10.75 -14.67 -0.16 -0.33 16 8 N -0.20 -4.07 10.61 32.16 0.34 -3.73 16 9 N -0.62 -13.97 6.10 -5.88 -0.04 -14.01 16 10 C 0.30 7.62 3.23 -69.08 -0.22 7.39 16 11 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 12 C -0.15 -3.72 9.30 37.16 0.35 -3.38 16 13 C -0.53 -14.32 8.73 -34.44 -0.30 -14.63 16 14 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 15 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 16 N -0.89 -24.73 11.33 55.43 0.63 -24.10 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C -0.08 -1.02 9.43 -39.18 -0.37 -1.39 16 22 C -0.12 -1.49 5.89 -104.53 -0.62 -2.10 16 23 C -0.10 -1.00 9.78 36.01 0.35 -0.65 16 24 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 25 H 0.05 0.40 7.65 -51.92 -0.40 0.00 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.13 1.37 6.28 -52.48 -0.33 1.04 16 28 H 0.13 2.18 7.55 -52.48 -0.40 1.78 16 29 H 0.10 1.54 8.02 -52.48 -0.42 1.12 16 30 H 0.37 7.64 8.58 -182.60 -1.57 6.08 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -29.35 324.04 -7.78 -37.13 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.71 Total: 4.49 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.68 Total: -16.56 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.93 Total: -41.84 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.18 Total: -3.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.35 -7.78 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.151 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds