Wall clock time and date at job start Mon Mar 30 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35885 * 117.00091 * 2 1 4 4 C 1.38894 * 119.89753 * 0.02562 * 3 2 1 5 5 C 1.37809 * 120.09992 * 180.02562 * 4 3 2 6 6 C 1.39719 * 119.90204 * 359.97438 * 5 4 3 7 7 C 1.47486 * 120.10121 * 180.02562 * 6 5 4 8 8 N 1.29736 * 119.99968 * 359.97438 * 7 6 5 9 9 N 1.40105 * 119.99968 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00063 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.47058 * 330.00507 * 10 9 8 12 12 C 1.52999 * 109.47276 * 89.99692 * 10 9 8 13 13 C 1.50699 * 109.47248 * 209.99951 * 10 9 8 14 14 H 1.08000 * 120.00005 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99921 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99976 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99793 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47039 * 90.00039 * 17 15 13 19 19 H 1.48503 * 109.47257 * 209.99917 * 17 15 13 20 20 H 1.48498 * 109.47398 * 330.00272 * 17 15 13 21 21 C 1.39689 * 119.79837 * 0.27542 * 6 5 4 22 22 C 1.37850 * 119.89681 * 359.45270 * 21 6 5 23 23 C 1.50703 * 119.94865 * 180.24806 * 22 21 6 24 24 H 1.08996 * 109.46923 * 60.00113 * 1 2 3 25 25 H 1.08998 * 109.46587 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46868 * 299.99771 * 1 2 3 27 27 H 1.08000 * 119.94765 * 359.97438 * 4 3 2 28 28 H 1.08003 * 120.05154 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.99959 * 180.02562 * 7 6 5 30 30 H 0.96999 * 119.99953 * 0.02562 * 9 8 7 31 31 H 1.08998 * 109.47074 * 300.00425 * 12 10 9 32 32 H 1.09007 * 109.46853 * 59.99785 * 12 10 9 33 33 H 1.08996 * 109.47549 * 179.97438 * 12 10 9 34 34 H 0.97007 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.04826 * 179.69940 * 21 6 5 36 36 H 1.08996 * 109.47257 * 270.30105 * 23 22 21 37 37 H 1.08997 * 109.47100 * 30.30251 * 23 22 21 38 38 H 1.09005 * 109.47298 * 150.29691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2874 2.3743 0.0005 5 6 1.9087 3.6043 0.0000 6 6 3.3039 3.6800 -0.0005 7 6 3.9734 4.9941 -0.0005 8 7 3.2667 6.0821 -0.0005 9 7 3.9027 7.3305 -0.0011 10 6 3.1048 8.5591 -0.0005 11 1 2.1600 8.3790 -0.5136 12 6 2.8281 8.9869 1.4422 13 6 3.8626 9.6506 -0.7115 14 1 4.8405 9.4491 -1.1231 15 6 3.3069 10.9061 -0.8376 16 7 2.1158 11.1513 -0.3368 17 14 4.2465 12.2592 -1.7183 18 1 3.9084 12.2362 -3.1641 19 1 3.8726 13.5764 -1.1434 20 1 5.7053 12.0407 -1.5476 21 6 4.0626 2.5072 -0.0064 22 6 3.4326 1.2811 -0.0001 23 6 4.2501 0.0151 -0.0008 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2090 2.3148 0.0005 28 1 1.3181 4.5086 0.0000 29 1 5.0519 5.0507 -0.0014 30 1 4.8714 7.3813 -0.0018 31 1 2.2800 8.1974 1.9564 32 1 3.7728 9.1669 1.9553 33 1 2.2348 9.9012 1.4426 34 1 1.7247 12.0346 -0.4258 35 1 5.1413 2.5609 -0.0117 36 1 4.4468 -0.2899 -1.0285 37 1 5.1950 0.1925 0.5128 38 1 3.6997 -0.7731 0.5132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:13 Heat of formation + Delta-G solvation = 19.059499 kcal Electronic energy + Delta-G solvation = -18500.569211 eV Core-core repulsion = 15537.033633 eV Total energy + Delta-G solvation = -2963.535579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13114 -37.65715 -36.22113 -34.09735 -32.72034 -31.47281 -29.94850 -27.81338 -27.25361 -26.12864 -25.22605 -22.82223 -21.88148 -20.37018 -19.58457 -17.92290 -16.98947 -16.42057 -15.82129 -15.31310 -15.30755 -14.76101 -14.25915 -13.77763 -13.59917 -13.44796 -12.97204 -12.70931 -12.51943 -12.24446 -12.07772 -12.05321 -11.61358 -11.44932 -11.15907 -11.02843 -10.82298 -10.71429 -10.44586 -10.24503 -10.18029 -9.51273 -9.04513 -8.73538 -8.54708 -8.17119 -6.70739 -6.15265 -4.23651 1.28107 1.48553 3.03296 3.23382 3.25330 3.29742 3.32118 3.80443 4.11290 4.35416 4.83182 4.85026 5.01725 5.02940 5.15299 5.17709 5.30841 5.42439 5.44976 5.60645 5.66275 5.70267 5.91191 6.04798 6.20415 6.46831 6.49728 6.70806 6.77555 6.86379 6.98611 7.03083 7.14286 7.41879 7.56311 7.76319 7.84929 8.13761 8.29299 8.84102 9.32965 9.43326 10.90589 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.003219 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.836782 B = 8697.013331 C = 9073.825859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.112 3.888 4 C -0.202 4.202 5 C -0.066 4.066 6 C -0.037 4.037 7 C -0.010 4.010 8 N -0.197 5.197 9 N -0.624 5.624 10 C 0.297 3.703 11 H 0.041 0.959 12 C -0.150 4.150 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.101 4.101 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.369 0.631 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.090 0.910 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 -19.626 1.290 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.067 3.933 4 C -0.220 4.220 5 C -0.086 4.086 6 C -0.039 4.039 7 C -0.218 4.218 8 N -0.009 5.009 9 N -0.360 5.360 10 C 0.195 3.805 11 H 0.059 0.941 12 C -0.210 4.210 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.204 0.796 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.291 -19.063 1.313 19.152 hybrid contribution 1.401 0.910 -0.441 1.728 sum 0.111 -18.153 0.873 18.175 Atomic orbital electron populations 1.23012 0.78816 1.03487 1.01429 1.86008 1.20969 1.27197 1.89057 1.18853 0.91735 0.83965 0.98796 1.21144 0.99792 0.92204 1.08896 1.21178 0.94074 0.97236 0.96139 1.18338 0.92682 0.91018 1.01882 1.23406 0.96147 0.90368 1.11896 1.73887 1.30023 0.92936 1.04098 1.49057 1.06568 0.99805 1.80579 1.18533 0.91590 0.77440 0.92960 0.94077 1.22207 0.99609 1.01420 0.97736 1.21240 1.03988 0.95066 1.36726 0.92195 1.24861 0.95035 0.98350 0.95398 1.69890 1.15380 1.22473 1.44643 0.86419 0.79984 0.80845 0.79694 1.20516 1.21006 1.19870 1.20849 0.99490 0.90092 0.99459 1.19032 0.90458 0.95825 1.06563 1.20563 0.98681 0.94524 1.02004 0.92722 0.88605 0.92738 0.85652 0.84759 0.88208 0.79552 0.96860 0.95520 0.89153 0.92548 0.85324 0.91690 0.91834 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.69 9.52 -19.38 -0.18 -3.88 16 3 C 0.11 1.46 6.66 -39.12 -0.26 1.20 16 4 C -0.20 -2.66 9.02 -39.50 -0.36 -3.02 16 5 C -0.07 -1.01 9.57 -39.19 -0.38 -1.38 16 6 C -0.04 -0.57 5.87 -105.03 -0.62 -1.18 16 7 C -0.01 -0.17 10.75 -14.67 -0.16 -0.33 16 8 N -0.20 -4.07 10.61 32.16 0.34 -3.73 16 9 N -0.62 -13.97 6.10 -5.88 -0.04 -14.01 16 10 C 0.30 7.62 3.23 -69.08 -0.22 7.39 16 11 H 0.04 1.17 8.14 -51.92 -0.42 0.75 16 12 C -0.15 -3.73 9.29 37.16 0.35 -3.38 16 13 C -0.53 -14.33 8.74 -34.44 -0.30 -14.63 16 14 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.08 -1.02 9.43 -39.18 -0.37 -1.39 16 22 C -0.12 -1.49 5.89 -104.54 -0.62 -2.10 16 23 C -0.10 -1.00 9.78 36.01 0.35 -0.65 16 24 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.13 1.37 6.28 -52.49 -0.33 1.04 16 28 H 0.13 2.18 7.55 -52.48 -0.40 1.78 16 29 H 0.10 1.54 8.02 -52.49 -0.42 1.12 16 30 H 0.37 7.65 8.58 -182.59 -1.57 6.08 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -29.34 324.02 -7.78 -37.12 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.71 Total: 4.50 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.68 Total: -16.56 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.93 Total: -41.84 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.18 Total: -3.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.34 -7.78 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.182 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds