Wall clock time and date at job start Mon Mar 30 2020 07:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46898 * 2 1 4 4 C 1.35882 * 117.00229 * 179.97438 * 3 2 1 5 5 C 1.38870 * 119.90312 * 180.02562 * 4 3 2 6 6 C 1.37834 * 120.10509 * 180.02562 * 5 4 3 7 7 C 1.39705 * 119.89496 * 0.02562 * 6 5 4 8 8 C 1.47477 * 120.09904 * 180.02562 * 7 6 5 9 9 N 1.29746 * 119.99917 * 180.02562 * 8 7 6 10 10 N 1.40104 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.39711 * 119.80057 * 0.27060 * 7 6 5 23 23 C 1.37838 * 119.89857 * 359.45591 * 22 7 6 24 24 H 1.08994 * 109.47518 * 300.00197 * 1 2 3 25 25 H 1.08999 * 109.47164 * 60.00638 * 1 2 3 26 26 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47615 * 240.00191 * 2 1 3 28 28 H 1.08999 * 109.47164 * 119.99361 * 2 1 3 29 29 H 1.08007 * 119.94627 * 359.97438 * 5 4 3 30 30 H 1.07994 * 120.05274 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.00144 * 359.97438 * 8 7 6 32 32 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 33 33 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 34 34 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 35 35 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.04853 * 179.72203 * 22 7 6 38 38 H 1.07998 * 119.94905 * 180.24653 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3534 1.5254 0.0005 5 6 3.8819 2.8096 0.0011 6 6 5.2477 2.9951 0.0011 7 6 6.1007 1.8887 0.0000 8 6 7.5627 2.0820 0.0006 9 7 8.3531 1.0531 -0.0009 10 7 9.7421 1.2367 -0.0009 11 6 10.6345 0.0749 -0.0021 12 1 10.1501 -0.7558 0.5111 13 6 10.9450 -0.3282 -1.4450 14 6 11.9164 0.4255 0.7085 15 1 12.0529 1.4149 1.1195 16 6 12.9155 -0.5165 0.8330 17 7 12.7495 -1.7212 0.3321 18 14 14.5047 -0.0816 1.7131 19 1 15.4803 0.4612 0.7340 20 1 14.2297 0.9392 2.7559 21 1 15.0675 -1.2998 2.3492 22 6 5.5645 0.5986 -0.0068 23 6 4.1974 0.4227 -0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.2216 3.6644 0.0007 30 1 5.6578 3.9942 0.0012 31 1 7.9755 3.0799 0.0015 32 1 10.1128 2.1331 -0.0001 33 1 11.6087 -1.1929 -1.4459 34 1 10.0178 -0.5818 -1.9590 35 1 11.4294 0.5025 -1.9581 36 1 13.4526 -2.3838 0.4194 37 1 6.2202 -0.2596 -0.0122 38 1 3.7820 -0.5742 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:03 Heat of formation + Delta-G solvation = 18.843041 kcal Electronic energy + Delta-G solvation = -18267.988720 eV Core-core repulsion = 15304.443755 eV Total energy + Delta-G solvation = -2963.544965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03599 -37.73215 -36.19298 -34.00616 -32.22492 -31.35153 -30.86444 -29.44924 -26.82678 -25.23714 -24.09442 -23.15467 -21.64904 -20.42058 -19.92823 -18.25525 -16.99788 -16.22308 -16.21598 -15.49446 -15.16049 -14.81412 -14.25194 -13.60735 -13.53293 -13.44420 -13.21644 -12.78298 -12.72918 -12.49501 -12.06202 -11.83435 -11.70856 -11.43299 -11.06817 -10.99104 -10.78613 -10.69553 -10.44697 -10.24592 -10.19949 -9.51627 -9.04012 -8.89917 -8.56404 -8.24241 -6.71281 -6.15334 -4.23684 1.27685 1.50986 3.04636 3.13260 3.23082 3.29640 3.32351 3.80776 4.13873 4.35433 4.69764 4.72236 4.92519 5.02289 5.03578 5.16891 5.24452 5.26278 5.48798 5.53083 5.53662 5.76026 5.80838 5.95142 6.17626 6.39330 6.46236 6.69984 6.77290 6.85335 6.98438 7.02997 7.14101 7.44020 7.56255 7.76180 7.84813 8.13634 8.29159 8.84029 9.32734 9.43230 10.90509 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040915 B = 0.002977 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.185979 B = 9402.288534 C = 9728.720621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.116 3.884 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.042 4.042 8 C -0.010 4.010 9 N -0.197 5.197 10 N -0.624 5.624 11 C 0.297 3.703 12 H 0.041 0.959 13 C -0.150 4.150 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.284 1.284 22 C -0.061 4.061 23 C -0.206 4.206 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.369 0.631 33 H 0.090 0.910 34 H 0.012 0.988 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.336 4.996 -1.294 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.070 3.930 5 C -0.170 4.170 6 C -0.096 4.096 7 C -0.044 4.044 8 C -0.218 4.218 9 N -0.010 5.010 10 N -0.360 5.360 11 C 0.195 3.805 12 H 0.059 0.941 13 C -0.210 4.210 14 C -0.570 4.570 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.210 1.210 22 C -0.081 4.081 23 C -0.225 4.225 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.205 0.795 33 H 0.108 0.892 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.177 3.768 -1.309 19.587 hybrid contribution 1.325 1.151 0.414 1.804 sum -17.852 4.919 -0.895 18.539 Atomic orbital electron populations 1.21769 0.92985 1.02725 1.03362 1.22746 0.95598 0.82293 1.01512 1.86017 1.19459 1.29010 1.88998 1.19028 0.81897 0.94234 0.97874 1.20214 0.94922 0.94514 1.07335 1.20940 0.91786 0.98349 0.98546 1.18370 0.90877 0.92954 1.02226 1.23414 0.91790 0.94753 1.11875 1.73889 0.93588 1.29383 1.04135 1.49059 0.97066 1.09320 1.80588 1.18533 0.86100 0.82940 0.92954 0.94069 1.22210 0.98969 1.02061 0.97740 1.21235 0.99938 0.99029 1.36760 0.92201 1.24868 0.98618 0.94769 0.95426 1.69891 1.33912 1.03811 1.44778 0.86418 0.82851 0.77972 0.79698 1.20515 1.19875 1.20999 1.21205 0.93882 0.97461 0.95559 1.21164 0.94313 0.97778 1.09209 0.91618 0.91632 0.90495 0.92057 0.92044 0.85471 0.85269 0.88187 0.79549 0.89151 0.96867 0.95521 0.92548 0.84736 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.82 10.13 -19.37 -0.20 -4.01 16 4 C 0.12 1.50 6.69 -39.12 -0.26 1.24 16 5 C -0.15 -1.86 9.97 -39.50 -0.39 -2.26 16 6 C -0.08 -0.96 9.78 -39.18 -0.38 -1.34 16 7 C -0.04 -0.64 5.87 -105.04 -0.62 -1.25 16 8 C -0.01 -0.17 10.75 -14.67 -0.16 -0.33 16 9 N -0.20 -4.07 10.61 32.16 0.34 -3.73 16 10 N -0.62 -13.96 6.10 -5.88 -0.04 -14.00 16 11 C 0.30 7.61 3.23 -69.09 -0.22 7.38 16 12 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.15 -3.73 9.29 37.16 0.35 -3.38 16 14 C -0.53 -14.29 8.74 -34.44 -0.30 -14.59 16 15 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 18 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.06 -0.92 9.57 -39.18 -0.37 -1.30 16 23 C -0.21 -2.71 9.02 -39.50 -0.36 -3.07 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.10 1.53 8.02 -52.49 -0.42 1.11 16 32 H 0.37 7.63 8.58 -182.59 -1.57 6.06 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.13 2.17 7.55 -52.48 -0.40 1.77 16 38 H 0.12 1.37 6.27 -52.49 -0.33 1.04 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -29.18 325.83 -8.36 -37.54 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.75 Total: 4.76 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.23 Total: -17.14 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.93 Total: -41.82 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.18 -8.36 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.381 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds