Wall clock time and date at job start Mon Mar 30 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46898 * 2 1 4 4 C 1.35882 * 117.00229 * 179.97438 * 3 2 1 5 5 C 1.38870 * 119.90312 * 180.02562 * 4 3 2 6 6 C 1.37834 * 120.10509 * 180.02562 * 5 4 3 7 7 C 1.39705 * 119.89496 * 0.02562 * 6 5 4 8 8 C 1.47477 * 120.09904 * 180.02562 * 7 6 5 9 9 N 1.29746 * 119.99917 * 180.02562 * 8 7 6 10 10 N 1.40104 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.39711 * 119.80057 * 0.27060 * 7 6 5 23 23 C 1.37838 * 119.89857 * 359.45591 * 22 7 6 24 24 H 1.08994 * 109.47518 * 300.00197 * 1 2 3 25 25 H 1.08999 * 109.47164 * 60.00638 * 1 2 3 26 26 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47615 * 240.00191 * 2 1 3 28 28 H 1.08999 * 109.47164 * 119.99361 * 2 1 3 29 29 H 1.08007 * 119.94627 * 359.97438 * 5 4 3 30 30 H 1.07994 * 120.05274 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.00144 * 359.97438 * 8 7 6 32 32 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 33 33 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 34 34 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 35 35 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.04853 * 179.72203 * 22 7 6 38 38 H 1.07998 * 119.94905 * 180.24653 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3534 1.5254 0.0005 5 6 3.8819 2.8096 0.0011 6 6 5.2477 2.9951 0.0011 7 6 6.1007 1.8887 0.0000 8 6 7.5627 2.0820 0.0006 9 7 8.3531 1.0531 -0.0009 10 7 9.7421 1.2367 -0.0009 11 6 10.6345 0.0749 -0.0021 12 1 10.1501 -0.7558 0.5111 13 6 10.9450 -0.3282 -1.4450 14 6 11.9164 0.4255 0.7085 15 1 12.0529 1.4149 1.1195 16 6 12.9155 -0.5165 0.8330 17 7 12.7495 -1.7212 0.3321 18 14 14.5047 -0.0816 1.7131 19 1 15.4803 0.4612 0.7340 20 1 14.2297 0.9392 2.7559 21 1 15.0675 -1.2998 2.3492 22 6 5.5645 0.5986 -0.0068 23 6 4.1974 0.4227 -0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.2216 3.6644 0.0007 30 1 5.6578 3.9942 0.0012 31 1 7.9755 3.0799 0.0015 32 1 10.1128 2.1331 -0.0001 33 1 11.6087 -1.1929 -1.4459 34 1 10.0178 -0.5818 -1.9590 35 1 11.4294 0.5025 -1.9581 36 1 13.4526 -2.3838 0.4194 37 1 6.2202 -0.2596 -0.0122 38 1 3.7820 -0.5742 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:02 Heat of formation + Delta-G solvation = 2.074798 kcal Electronic energy + Delta-G solvation = -18268.715846 eV Core-core repulsion = 15304.443755 eV Total energy + Delta-G solvation = -2964.272091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01582 -38.83954 -37.75035 -35.77297 -33.51424 -32.61659 -31.89380 -30.79437 -28.39081 -27.28729 -24.91285 -24.40445 -22.73502 -22.08969 -21.29336 -19.21051 -18.77582 -17.60424 -17.12899 -16.99941 -16.59600 -16.17825 -15.47719 -15.08712 -14.59662 -14.45697 -14.40451 -14.23818 -14.12804 -13.52462 -13.38230 -13.07286 -12.99216 -12.80286 -12.61343 -12.55696 -12.35221 -12.20184 -12.08129 -11.68520 -11.55397 -11.14395 -10.85777 -10.59031 -9.93929 -9.50834 -8.27817 -8.14757 -6.35658 0.12293 0.46338 1.42529 1.43109 1.53758 1.76544 2.19143 2.29825 2.47706 3.00485 3.10346 3.85573 3.95692 4.01092 4.08579 4.19267 4.38354 4.43143 4.45828 4.61105 4.73035 4.74820 4.93099 4.97531 4.97712 5.09043 5.12390 5.21366 5.23158 5.38525 5.48371 5.53134 5.64717 5.80855 5.82430 5.90575 6.18678 6.41647 6.48614 6.84439 7.35966 7.80589 8.86597 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040915 B = 0.002977 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.185979 B = 9402.288534 C = 9728.720621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.121 3.879 5 C -0.155 4.155 6 C -0.057 4.057 7 C -0.077 4.077 8 C 0.031 3.969 9 N -0.250 5.250 10 N -0.643 5.643 11 C 0.308 3.692 12 H 0.000 1.000 13 C -0.136 4.136 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.972 3.028 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.281 1.281 22 C -0.071 4.071 23 C -0.212 4.212 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.373 0.627 33 H 0.069 0.931 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.114 0.886 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.935 6.706 -1.037 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.075 3.925 5 C -0.173 4.173 6 C -0.078 4.078 7 C -0.079 4.079 8 C -0.179 4.179 9 N -0.059 5.059 10 N -0.380 5.380 11 C 0.204 3.796 12 H 0.018 0.982 13 C -0.196 4.196 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.796 3.204 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.207 1.207 22 C -0.092 4.092 23 C -0.230 4.230 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.141 0.859 32 H 0.210 0.790 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.801 5.482 -1.057 21.537 hybrid contribution 1.443 0.684 0.327 1.630 sum -19.358 6.165 -0.730 20.329 Atomic orbital electron populations 1.21793 0.91204 1.04104 1.03338 1.23056 0.97061 0.80998 1.02083 1.86033 1.18613 1.30984 1.88523 1.19264 0.82505 0.94475 0.96291 1.20565 0.95127 0.95151 1.06465 1.21229 0.91653 0.98784 0.96093 1.18475 0.90061 0.93989 1.05404 1.24021 0.92534 0.95226 1.06082 1.73947 0.92762 1.30924 1.08304 1.48515 0.97723 1.08204 1.83571 1.18096 0.86065 0.82987 0.92472 0.98250 1.22025 0.98586 1.01193 0.97750 1.21525 1.00738 0.99230 1.37153 0.92069 1.25734 1.01901 0.94591 0.96045 1.70020 1.34970 1.04701 1.45653 0.85356 0.78694 0.77737 0.78602 1.19625 1.19408 1.20668 1.21179 0.94657 0.97129 0.96239 1.21286 0.93498 0.99048 1.09184 0.91649 0.91627 0.88449 0.91463 0.91512 0.82937 0.82280 0.85906 0.78960 0.91247 0.96446 0.95071 0.92382 0.86744 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.04 0.65 5.46 71.98 0.39 1.05 16 3 O -0.33 -6.98 10.13 -92.23 -0.93 -7.92 16 4 C 0.12 2.86 6.69 22.57 0.15 3.01 16 5 C -0.15 -3.31 9.97 22.33 0.22 -3.08 16 6 C -0.06 -1.28 9.78 22.53 0.22 -1.06 16 7 C -0.08 -2.25 5.87 -20.13 -0.12 -2.36 16 8 C 0.03 1.05 10.75 87.44 0.94 1.99 16 9 N -0.25 -10.56 10.61 -52.18 -0.55 -11.11 16 10 N -0.64 -29.60 6.10 -172.53 -1.05 -30.65 16 11 C 0.31 16.43 3.23 44.24 0.14 16.58 16 12 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 13 C -0.14 -6.99 9.29 71.98 0.67 -6.32 16 14 C -0.55 -30.18 8.74 25.60 0.22 -29.95 16 15 H 0.06 3.27 7.79 -2.91 -0.02 3.24 16 16 C 0.02 0.96 5.30 84.66 0.45 1.40 16 17 N -0.92 -52.33 11.32 21.45 0.24 -52.09 16 18 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.07 -2.16 9.57 22.53 0.22 -1.94 16 23 C -0.21 -5.32 9.02 22.32 0.20 -5.11 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 0.96 7.65 -2.39 -0.02 0.94 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.12 3.49 8.02 -2.91 -0.02 3.46 16 32 H 0.37 15.72 8.58 -213.31 -1.83 13.89 16 33 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 34 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.11 3.88 7.55 -2.91 -0.02 3.86 16 38 H 0.14 2.94 6.27 -2.91 -0.02 2.92 16 Total: -1.00 -64.18 325.83 3.40 -60.78 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.78 Total: 22.77 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.45 Total: -26.64 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -1.36 Total: -93.86 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.93 Total: -7.92 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.18 3.40 -60.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.855 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds