Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.46916 * 2 1 4 4 C 1.35842 * 117.00386 * 179.97438 * 3 2 1 5 5 C 1.38498 * 120.13158 * 0.29812 * 4 3 2 6 6 C 1.38244 * 120.09410 * 180.28141 * 5 4 3 7 7 C 1.38424 * 120.37663 * 359.71104 * 6 5 4 8 8 C 1.37931 * 120.26390 * 359.97438 * 7 6 5 9 9 C 1.39639 * 119.90019 * 0.02562 * 8 7 6 10 10 C 1.47438 * 120.18214 * 180.02562 * 9 8 7 11 11 N 1.29758 * 119.99889 * 179.72177 * 10 9 8 12 12 N 1.40097 * 120.00066 * 180.27853 * 11 10 9 13 13 C 1.46499 * 119.99899 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47296 * 29.99906 * 13 12 11 15 15 C 1.53001 * 109.47147 * 269.99600 * 13 12 11 16 16 C 1.50708 * 109.47070 * 149.99638 * 13 12 11 17 17 H 1.08000 * 119.99863 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99841 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00222 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99769 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47227 * 120.00066 * 20 18 16 23 23 H 1.48503 * 109.46713 * 239.99717 * 20 18 16 24 24 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47736 * 300.00113 * 1 2 3 26 26 H 1.09006 * 109.47366 * 60.00591 * 1 2 3 27 27 H 1.08993 * 109.47317 * 240.00079 * 2 1 3 28 28 H 1.09001 * 109.46946 * 119.99215 * 2 1 3 29 29 H 1.07994 * 119.95435 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.81023 * 179.74554 * 6 5 4 31 31 H 1.07996 * 119.86956 * 179.97438 * 7 6 5 32 32 H 1.08007 * 120.05297 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.00443 * 0.02562 * 10 9 8 34 34 H 0.97000 * 120.00306 * 359.97438 * 12 11 10 35 35 H 1.09005 * 109.46870 * 180.02562 * 15 13 12 36 36 H 1.08991 * 109.47225 * 299.99637 * 15 13 12 37 37 H 1.08998 * 109.46831 * 60.00643 * 15 13 12 38 38 H 0.97000 * 120.00356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3529 1.5254 0.0005 5 6 4.1992 0.4291 -0.0052 6 6 5.5696 0.6113 0.0013 7 6 6.1061 1.8873 0.0074 8 6 5.2774 2.9898 0.0066 9 6 3.8915 2.8189 0.0002 10 6 2.9999 3.9931 -0.0013 11 7 1.7126 3.8302 -0.0127 12 7 0.8654 4.9460 -0.0200 13 6 -0.5880 4.7620 -0.0324 14 1 -0.8411 3.8334 0.4794 15 6 -1.0817 4.6980 -1.4791 16 6 -1.2469 5.9197 0.6725 17 1 -0.6434 6.7133 1.0878 18 6 -2.6201 5.9656 0.7873 19 7 -3.3550 4.9995 0.2812 20 14 -3.4369 7.4010 1.6604 21 1 -2.3966 8.3482 2.1355 22 1 -4.3494 8.0985 0.7191 23 1 -4.2140 6.8968 2.8211 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.7881 -0.5695 -0.0096 30 1 6.2253 -0.2470 0.0009 31 1 7.1779 2.0201 0.0128 32 1 5.6997 3.9839 0.0110 33 1 3.4181 4.9889 0.0023 34 1 1.2410 5.8403 -0.0161 35 1 -2.1631 4.5616 -1.4883 36 1 -0.8287 5.6265 -1.9907 37 1 -0.6052 3.8607 -1.9889 38 1 -4.3211 5.0320 0.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = 27.230291 kcal Electronic energy + Delta-G solvation = -19287.405782 eV Core-core repulsion = 16324.224515 eV Total energy + Delta-G solvation = -2963.181267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.84654 -37.21736 -36.22053 -34.03316 -32.02985 -31.32674 -30.32793 -29.21636 -26.90590 -25.18862 -23.75594 -23.08224 -21.31451 -20.38394 -19.90915 -17.85632 -16.87012 -16.06358 -15.77681 -15.55926 -14.89165 -14.83874 -14.24619 -13.71700 -13.28365 -13.11384 -12.93712 -12.46333 -12.32394 -12.30242 -11.78973 -11.58153 -11.39297 -11.34211 -11.03228 -10.80748 -10.67724 -10.50514 -10.46905 -10.21164 -10.16415 -9.28928 -8.98652 -8.79703 -8.47749 -8.03381 -6.62427 -6.10705 -4.18452 1.27903 1.64930 3.18265 3.24719 3.32307 3.35837 3.52949 3.93159 4.18352 4.39719 4.93439 4.96538 5.15057 5.20814 5.21834 5.27764 5.43104 5.45814 5.60788 5.68225 5.94931 5.96917 6.11055 6.21455 6.41336 6.44440 6.62016 6.64133 6.81752 6.95359 7.05995 7.10766 7.21856 7.62329 7.79438 7.85433 7.92004 8.21266 8.37300 8.90505 9.46149 9.48959 10.95027 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.004652 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.727184 B = 6016.831124 C = 6754.386399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.272 6.272 4 C 0.144 3.856 5 C -0.214 4.214 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.079 4.079 9 C -0.039 4.039 10 C -0.025 4.025 11 N -0.162 5.162 12 N -0.626 5.626 13 C 0.299 3.701 14 H 0.042 0.958 15 C -0.149 4.149 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.365 0.635 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.012 0.988 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.741 -8.929 -1.183 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.183 6.183 4 C 0.095 3.905 5 C -0.233 4.233 6 C -0.112 4.112 7 C -0.179 4.179 8 C -0.100 4.100 9 C -0.042 4.042 10 C -0.232 4.232 11 N 0.024 4.976 12 N -0.362 5.362 13 C 0.197 3.803 14 H 0.060 0.940 15 C -0.208 4.208 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.367 -9.521 -1.209 15.654 hybrid contribution 0.304 1.578 0.427 1.663 sum 12.671 -7.942 -0.782 14.975 Atomic orbital electron populations 1.21717 0.92479 1.01937 1.04561 1.22765 0.96388 0.82863 1.00253 1.86498 1.17541 1.27353 1.86918 1.19176 0.83272 0.93080 0.94945 1.21148 0.94351 0.97823 1.10001 1.20860 0.94152 0.97097 0.99058 1.20824 0.99374 0.92365 1.05376 1.20937 0.91043 0.99055 0.98975 1.17862 0.92145 0.89364 1.04786 1.23310 0.90756 0.95469 1.13652 1.74256 1.03912 1.17189 1.02194 1.49151 1.05646 1.01077 1.80370 1.18484 0.71390 0.97621 0.92816 0.93997 1.22186 1.03713 0.97035 0.97872 1.21304 0.91757 1.07129 1.36586 0.92246 1.24846 0.96980 0.96363 0.95432 1.69900 1.05621 1.32059 1.44811 0.86398 0.79341 0.82096 0.79299 1.19802 1.20871 1.20866 0.91118 0.91121 0.91190 0.92799 0.92775 0.85848 0.86436 0.86260 0.85491 0.88331 0.79926 0.89289 0.95709 0.96850 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 16 2 C 0.05 0.73 5.46 37.16 0.20 0.93 16 3 O -0.27 -4.88 8.01 -19.24 -0.15 -5.03 16 4 C 0.14 2.36 6.70 -38.78 -0.26 2.10 16 5 C -0.21 -2.84 9.03 -39.48 -0.36 -3.19 16 6 C -0.09 -1.06 10.03 -39.51 -0.40 -1.46 16 7 C -0.16 -1.84 10.03 -39.63 -0.40 -2.23 16 8 C -0.08 -1.03 9.79 -39.17 -0.38 -1.41 16 9 C -0.04 -0.63 5.88 -104.92 -0.62 -1.25 16 10 C -0.02 -0.45 10.75 -14.68 -0.16 -0.61 16 11 N -0.16 -3.53 9.35 32.15 0.30 -3.23 16 12 N -0.63 -14.49 6.10 -5.88 -0.04 -14.53 16 13 C 0.30 7.81 3.23 -69.08 -0.22 7.59 16 14 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.15 -3.75 9.29 37.16 0.35 -3.41 16 16 C -0.53 -14.44 8.74 -34.44 -0.30 -14.75 16 17 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.10 1.61 8.02 -52.49 -0.42 1.19 16 34 H 0.36 7.84 8.58 -182.60 -1.57 6.27 16 35 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -30.01 323.57 -8.44 -38.45 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.78 Total: 5.39 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.26 Total: -17.67 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.89 Total: -41.97 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.15 Total: -5.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.01 -8.44 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.677 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds