Wall clock time and date at job start Mon Mar 30 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.46916 * 2 1 4 4 C 1.35842 * 117.00386 * 179.97438 * 3 2 1 5 5 C 1.38498 * 120.13158 * 0.29812 * 4 3 2 6 6 C 1.38244 * 120.09410 * 180.28141 * 5 4 3 7 7 C 1.38424 * 120.37663 * 359.71104 * 6 5 4 8 8 C 1.37931 * 120.26390 * 359.97438 * 7 6 5 9 9 C 1.39639 * 119.90019 * 0.02562 * 8 7 6 10 10 C 1.47438 * 120.18214 * 180.02562 * 9 8 7 11 11 N 1.29758 * 119.99889 * 179.72177 * 10 9 8 12 12 N 1.40097 * 120.00066 * 180.27853 * 11 10 9 13 13 C 1.46499 * 119.99899 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47296 * 29.99906 * 13 12 11 15 15 C 1.53001 * 109.47147 * 269.99600 * 13 12 11 16 16 C 1.50708 * 109.47070 * 149.99638 * 13 12 11 17 17 H 1.08000 * 119.99863 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99841 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00222 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99769 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47227 * 120.00066 * 20 18 16 23 23 H 1.48503 * 109.46713 * 239.99717 * 20 18 16 24 24 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47736 * 300.00113 * 1 2 3 26 26 H 1.09006 * 109.47366 * 60.00591 * 1 2 3 27 27 H 1.08993 * 109.47317 * 240.00079 * 2 1 3 28 28 H 1.09001 * 109.46946 * 119.99215 * 2 1 3 29 29 H 1.07994 * 119.95435 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.81023 * 179.74554 * 6 5 4 31 31 H 1.07996 * 119.86956 * 179.97438 * 7 6 5 32 32 H 1.08007 * 120.05297 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.00443 * 0.02562 * 10 9 8 34 34 H 0.97000 * 120.00306 * 359.97438 * 12 11 10 35 35 H 1.09005 * 109.46870 * 180.02562 * 15 13 12 36 36 H 1.08991 * 109.47225 * 299.99637 * 15 13 12 37 37 H 1.08998 * 109.46831 * 60.00643 * 15 13 12 38 38 H 0.97000 * 120.00356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3529 1.5254 0.0005 5 6 4.1992 0.4291 -0.0052 6 6 5.5696 0.6113 0.0013 7 6 6.1061 1.8873 0.0074 8 6 5.2774 2.9898 0.0066 9 6 3.8915 2.8189 0.0002 10 6 2.9999 3.9931 -0.0013 11 7 1.7126 3.8302 -0.0127 12 7 0.8654 4.9460 -0.0200 13 6 -0.5880 4.7620 -0.0324 14 1 -0.8411 3.8334 0.4794 15 6 -1.0817 4.6980 -1.4791 16 6 -1.2469 5.9197 0.6725 17 1 -0.6434 6.7133 1.0878 18 6 -2.6201 5.9656 0.7873 19 7 -3.3550 4.9995 0.2812 20 14 -3.4369 7.4010 1.6604 21 1 -2.3966 8.3482 2.1355 22 1 -4.3494 8.0985 0.7191 23 1 -4.2140 6.8968 2.8211 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.7881 -0.5695 -0.0096 30 1 6.2253 -0.2470 0.0009 31 1 7.1779 2.0201 0.0128 32 1 5.6997 3.9839 0.0110 33 1 3.4181 4.9889 0.0023 34 1 1.2410 5.8403 -0.0161 35 1 -2.1631 4.5616 -1.4883 36 1 -0.8287 5.6265 -1.9907 37 1 -0.6052 3.8607 -1.9889 38 1 -4.3211 5.0320 0.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:04 Heat of formation + Delta-G solvation = 9.452820 kcal Electronic energy + Delta-G solvation = -19288.176671 eV Core-core repulsion = 16324.224515 eV Total energy + Delta-G solvation = -2963.952156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95659 -38.36869 -37.85418 -35.84662 -33.61898 -32.56377 -31.73219 -30.39384 -28.55336 -27.28916 -24.84489 -24.40131 -22.48768 -22.10848 -21.33642 -19.11417 -18.55686 -17.58092 -17.07356 -16.90721 -16.52896 -16.07118 -15.50441 -15.17651 -14.57608 -14.48642 -14.28665 -14.14527 -13.97510 -13.38730 -13.34122 -12.96503 -12.91547 -12.74303 -12.56490 -12.40552 -12.29790 -12.19054 -12.07071 -11.70639 -11.55864 -11.11183 -10.68445 -10.58961 -9.98824 -9.18342 -8.26577 -8.13227 -6.34468 0.17303 0.62837 1.41387 1.41894 1.54273 1.86710 2.23450 2.45464 2.53097 3.07370 3.11254 3.84298 3.97175 4.07687 4.18443 4.29884 4.36721 4.45324 4.51649 4.67195 4.70851 4.77895 4.92964 4.93713 4.98644 5.11892 5.15075 5.24300 5.27203 5.46899 5.54461 5.61296 5.68872 5.81680 5.90015 6.02873 6.21515 6.44623 6.71273 6.87175 7.37171 7.89114 8.87910 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.004652 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.727184 B = 6016.831124 C = 6754.386399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.312 6.312 4 C 0.122 3.878 5 C -0.221 4.221 6 C -0.078 4.078 7 C -0.159 4.159 8 C -0.068 4.068 9 C -0.088 4.088 10 C 0.012 3.988 11 N -0.215 5.215 12 N -0.647 5.647 13 C 0.313 3.687 14 H -0.003 1.003 15 C -0.132 4.132 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.279 1.279 24 H 0.106 0.894 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.118 0.882 34 H 0.368 0.632 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.013 0.987 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.633 -9.545 -0.906 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.224 6.224 4 C 0.073 3.927 5 C -0.239 4.239 6 C -0.097 4.097 7 C -0.177 4.177 8 C -0.089 4.089 9 C -0.091 4.091 10 C -0.198 4.198 11 N -0.025 5.025 12 N -0.384 5.384 13 C 0.209 3.791 14 H 0.015 0.985 15 C -0.191 4.191 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.205 1.205 24 H 0.125 0.875 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.135 0.865 34 H 0.205 0.795 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.276 -10.147 -0.938 18.363 hybrid contribution -0.268 1.577 0.338 1.635 sum 15.009 -8.570 -0.600 17.294 Atomic orbital electron populations 1.21727 0.93328 1.03403 1.01912 1.22950 0.95736 0.81877 1.02046 1.86459 1.18969 1.29549 1.87407 1.19558 0.83130 0.94226 0.95760 1.21430 0.95026 0.97770 1.09719 1.21389 0.93742 0.98626 0.95900 1.21295 1.01064 0.91663 1.03630 1.21294 0.89603 1.01089 0.96890 1.18131 0.93342 0.88749 1.08838 1.23997 0.90235 0.97494 1.08034 1.74353 1.05180 1.16532 1.06437 1.48643 1.04642 1.01624 1.83447 1.18020 0.73614 0.95212 0.92278 0.98497 1.21983 1.02205 0.97086 0.97862 1.21564 0.92418 1.07487 1.37202 0.92284 1.25710 0.97451 0.98974 0.95969 1.70027 1.05977 1.33683 1.45516 0.85323 0.78242 0.78766 0.78132 1.19210 1.20029 1.20474 0.87525 0.93882 0.93646 0.90742 0.90884 0.83980 0.82765 0.82591 0.83179 0.86478 0.79494 0.91257 0.95289 0.96828 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 10.28 71.98 0.74 -3.53 16 2 C 0.05 1.34 5.46 71.98 0.39 1.73 16 3 O -0.31 -11.53 8.01 -91.77 -0.74 -12.27 16 4 C 0.12 3.91 6.70 22.79 0.15 4.06 16 5 C -0.22 -5.25 9.03 22.33 0.20 -5.04 16 6 C -0.08 -1.43 10.03 22.32 0.22 -1.20 16 7 C -0.16 -2.86 10.03 22.24 0.22 -2.64 16 8 C -0.07 -1.56 9.79 22.54 0.22 -1.34 16 9 C -0.09 -2.79 5.88 -20.06 -0.12 -2.90 16 10 C 0.01 0.44 10.75 87.42 0.94 1.38 16 11 N -0.21 -9.83 9.35 -52.20 -0.49 -10.32 16 12 N -0.65 -31.51 6.10 -172.51 -1.05 -32.57 16 13 C 0.31 17.33 3.23 44.25 0.14 17.47 16 14 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C -0.13 -7.02 9.29 71.98 0.67 -6.35 16 16 C -0.55 -31.05 8.74 25.60 0.22 -30.82 16 17 H 0.06 3.26 7.78 -2.91 -0.02 3.24 16 18 C 0.02 1.07 5.30 84.66 0.45 1.51 16 19 N -0.91 -52.95 11.32 21.45 0.24 -52.71 16 20 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 1.69 7.65 -2.39 -0.02 1.67 16 28 H 0.07 1.68 7.67 -2.39 -0.02 1.66 16 29 H 0.14 2.73 6.30 -2.91 -0.02 2.71 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.12 3.76 8.02 -2.91 -0.02 3.73 16 34 H 0.37 16.54 8.58 -213.32 -1.83 14.71 16 35 H 0.07 3.93 6.07 -2.38 -0.01 3.91 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -68.99 323.57 3.67 -65.32 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.78 Total: 24.57 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.46 Total: -27.66 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -1.30 Total: -95.59 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.74 Total: -12.27 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.99 3.67 -65.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.771 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds