Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35899 * 116.99804 * 2 1 4 4 C 1.38877 * 119.98236 * 359.97438 * 3 2 1 5 5 C 1.38258 * 120.26249 * 180.02562 * 4 3 2 6 6 C 1.37985 * 120.21500 * 0.02562 * 5 4 3 7 7 C 1.39680 * 119.95197 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.12878 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.29745 * 120.00223 * 180.02562 * 8 7 6 11 11 N 1.40096 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.46497 * 120.00373 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.47369 * 29.99207 * 12 11 10 14 14 C 1.53008 * 109.46933 * 270.00061 * 12 11 10 15 15 C 1.50700 * 109.47872 * 149.99693 * 12 11 10 16 16 H 1.07995 * 119.99576 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00292 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99838 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99821 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47208 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47186 * 120.00015 * 19 17 15 22 22 H 1.48499 * 109.47442 * 239.99985 * 19 17 15 23 23 C 1.38425 * 119.97579 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47272 * 300.00160 * 1 2 3 26 26 H 1.08997 * 109.46758 * 60.00177 * 1 2 3 27 27 H 1.08004 * 119.86929 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.88930 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.02519 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47152 * 90.00157 * 9 8 7 31 31 H 1.08998 * 109.47019 * 209.99743 * 9 8 7 32 32 H 1.08995 * 109.47060 * 329.99586 * 9 8 7 33 33 H 0.97004 * 120.00105 * 359.97438 * 11 10 8 34 34 H 1.08992 * 109.47186 * 59.99272 * 14 12 11 35 35 H 1.09004 * 109.46759 * 180.02562 * 14 12 11 36 36 H 1.09007 * 109.46535 * 299.99208 * 14 12 11 37 37 H 0.97005 * 119.99383 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.10609 * 0.27633 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9109 3.6103 -0.0011 6 6 3.2881 3.6945 -0.0016 7 6 4.0580 2.5290 -0.0011 8 6 5.5305 2.6145 -0.0022 9 6 6.2072 3.9610 -0.0034 10 7 6.2433 1.5303 -0.0022 11 7 7.6419 1.6115 -0.0028 12 6 8.4467 0.3874 -0.0033 13 1 7.9024 -0.4052 -0.5170 14 6 8.7274 -0.0390 1.4391 15 6 9.7506 0.6436 -0.7142 16 1 9.9591 1.6207 -1.1242 17 6 10.6777 -0.3691 -0.8403 18 7 10.4244 -1.5586 -0.3396 19 14 12.2935 -0.0516 -1.7221 20 1 12.3341 1.3575 -2.1891 21 1 13.4229 -0.2962 -0.7894 22 1 12.4085 -0.9636 -2.8884 23 6 3.4284 1.2828 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2109 2.3160 -0.0005 28 1 1.3165 4.5120 -0.0019 29 1 3.7705 4.6608 -0.0025 30 1 6.3711 4.2862 1.0240 31 1 7.1651 3.8858 -0.5178 32 1 5.5747 4.6850 -0.5171 33 1 8.0774 2.4782 -0.0035 34 1 7.7845 -0.2243 1.9532 35 1 9.3267 -0.9496 1.4386 36 1 9.2718 0.7535 1.9527 37 1 11.0766 -2.2711 -0.4287 38 1 4.0179 0.3779 -0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771885381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = 25.622584 kcal Electronic energy + Delta-G solvation = -18846.620711 eV Core-core repulsion = 15883.369729 eV Total energy + Delta-G solvation = -2963.250982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96979 -37.87343 -36.46130 -34.31587 -31.99827 -30.71129 -30.01902 -28.22610 -27.44199 -26.53288 -25.19849 -22.81385 -22.06202 -20.43961 -19.20156 -17.79608 -16.53402 -16.16553 -15.83528 -15.71019 -15.25994 -15.01510 -14.25782 -13.84522 -13.57729 -13.40006 -13.09802 -12.58121 -12.49588 -12.24427 -12.10222 -11.65211 -11.47532 -11.35186 -11.12563 -11.05956 -10.82440 -10.69094 -10.40701 -10.23479 -10.17394 -9.47396 -9.03973 -8.81355 -8.50049 -8.12105 -6.76328 -6.14202 -4.22692 1.20341 1.61089 2.99084 3.23162 3.30401 3.31018 3.33948 3.80594 4.11377 4.36310 4.82865 4.92832 5.05436 5.05981 5.18203 5.20754 5.31234 5.37289 5.51313 5.55596 5.71259 5.83847 5.93112 6.16145 6.28345 6.45752 6.55757 6.60786 6.79213 6.92485 7.01078 7.07315 7.15721 7.50443 7.57688 7.77460 7.85771 8.14141 8.29238 8.84756 9.30989 9.44222 10.91654 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028429 B = 0.003888 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.679769 B = 7199.866372 C = 7839.302877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.126 3.874 4 C -0.221 4.221 5 C -0.081 4.081 6 C -0.154 4.154 7 C 0.043 3.957 8 C 0.003 3.997 9 C -0.130 4.130 10 N -0.185 5.185 11 N -0.617 5.617 12 C 0.294 3.706 13 H 0.043 0.957 14 C -0.150 4.150 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.134 4.134 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.371 0.629 34 H 0.013 0.987 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 8.542 1.301 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.241 4.241 5 C -0.100 4.100 6 C -0.175 4.175 7 C 0.041 3.959 8 C -0.184 4.184 9 C -0.189 4.189 10 N 0.001 4.999 11 N -0.354 5.354 12 C 0.192 3.808 13 H 0.060 0.940 14 C -0.209 4.209 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.154 4.154 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.209 0.791 34 H 0.032 0.968 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.575 6.968 1.317 18.028 hybrid contribution 0.986 1.395 -0.428 1.761 sum -15.589 8.362 0.889 17.712 Atomic orbital electron populations 1.23002 0.78909 1.03628 1.01061 1.86108 1.20930 1.27144 1.88891 1.18916 0.92180 0.83985 0.96839 1.21161 0.99543 0.92478 1.10915 1.20717 0.94319 0.96656 0.98277 1.21096 0.93383 0.97760 1.05218 1.18024 0.90018 0.92116 0.95770 1.22227 0.92052 0.91496 1.12587 1.20957 1.00551 0.95297 1.02133 1.74083 0.94836 1.26842 1.04150 1.49137 0.96919 1.09796 1.79530 1.18587 0.88056 0.81057 0.93083 0.93953 1.22201 0.98551 1.02534 0.97631 1.21259 1.01046 0.97915 1.36768 0.92176 1.24858 0.98530 0.94833 0.95397 1.69904 1.35635 1.02042 1.44672 0.86371 0.82911 0.78366 0.79327 1.19775 1.20834 1.20805 1.20625 0.90983 0.98905 1.04936 0.88508 0.92882 0.92866 0.86017 0.86044 0.85637 0.91554 0.91806 0.91158 0.79126 0.96782 0.89110 0.95539 0.92596 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.38 10.49 -19.42 -0.20 -4.59 16 3 C 0.13 1.83 6.68 -39.28 -0.26 1.56 16 4 C -0.22 -2.64 9.03 -39.34 -0.36 -3.00 16 5 C -0.08 -0.92 10.02 -39.67 -0.40 -1.32 16 6 C -0.15 -1.98 9.36 -39.14 -0.37 -2.35 16 7 C 0.04 0.69 5.87 -105.07 -0.62 0.07 16 8 C 0.00 0.05 7.10 -79.70 -0.57 -0.51 16 9 C -0.13 -1.86 9.03 36.01 0.33 -1.54 16 10 N -0.18 -3.90 10.61 35.12 0.37 -3.53 16 11 N -0.62 -13.85 5.95 -5.88 -0.03 -13.88 16 12 C 0.29 7.59 3.23 -69.08 -0.22 7.37 16 13 H 0.04 1.22 8.14 -51.93 -0.42 0.79 16 14 C -0.15 -3.74 9.29 37.16 0.35 -3.39 16 15 C -0.53 -14.33 8.74 -34.44 -0.30 -14.63 16 16 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -24.77 11.32 55.43 0.63 -24.15 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.13 -2.22 9.52 -38.99 -0.37 -2.60 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.12 1.12 6.28 -52.48 -0.33 0.79 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.34 6.35 -52.49 -0.33 1.01 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 32 H 0.07 0.83 6.47 -51.93 -0.34 0.49 16 33 H 0.37 7.70 6.36 -182.60 -1.16 6.54 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 2.43 6.07 -51.93 -0.31 2.11 16 36 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.14 2.57 7.55 -52.49 -0.40 2.18 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -29.68 317.82 -7.44 -37.12 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.08 Total: 5.80 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.89 Total: -17.37 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.96 Total: -41.56 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.68 -7.44 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.744 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds