Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35899 * 116.99804 * 2 1 4 4 C 1.38877 * 119.98236 * 359.97438 * 3 2 1 5 5 C 1.38258 * 120.26249 * 180.02562 * 4 3 2 6 6 C 1.37985 * 120.21500 * 0.02562 * 5 4 3 7 7 C 1.39680 * 119.95197 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.12878 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.29745 * 120.00223 * 180.02562 * 8 7 6 11 11 N 1.40096 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.46497 * 120.00373 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.47369 * 29.99207 * 12 11 10 14 14 C 1.53008 * 109.46933 * 270.00061 * 12 11 10 15 15 C 1.50700 * 109.47872 * 149.99693 * 12 11 10 16 16 H 1.07995 * 119.99576 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00292 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99838 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99821 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47208 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47186 * 120.00015 * 19 17 15 22 22 H 1.48499 * 109.47442 * 239.99985 * 19 17 15 23 23 C 1.38425 * 119.97579 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47272 * 300.00160 * 1 2 3 26 26 H 1.08997 * 109.46758 * 60.00177 * 1 2 3 27 27 H 1.08004 * 119.86929 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.88930 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.02519 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47152 * 90.00157 * 9 8 7 31 31 H 1.08998 * 109.47019 * 209.99743 * 9 8 7 32 32 H 1.08995 * 109.47060 * 329.99586 * 9 8 7 33 33 H 0.97004 * 120.00105 * 359.97438 * 11 10 8 34 34 H 1.08992 * 109.47186 * 59.99272 * 14 12 11 35 35 H 1.09004 * 109.46759 * 180.02562 * 14 12 11 36 36 H 1.09007 * 109.46535 * 299.99208 * 14 12 11 37 37 H 0.97005 * 119.99383 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.10609 * 0.27633 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9109 3.6103 -0.0011 6 6 3.2881 3.6945 -0.0016 7 6 4.0580 2.5290 -0.0011 8 6 5.5305 2.6145 -0.0022 9 6 6.2072 3.9610 -0.0034 10 7 6.2433 1.5303 -0.0022 11 7 7.6419 1.6115 -0.0028 12 6 8.4467 0.3874 -0.0033 13 1 7.9024 -0.4052 -0.5170 14 6 8.7274 -0.0390 1.4391 15 6 9.7506 0.6436 -0.7142 16 1 9.9591 1.6207 -1.1242 17 6 10.6777 -0.3691 -0.8403 18 7 10.4244 -1.5586 -0.3396 19 14 12.2935 -0.0516 -1.7221 20 1 12.3341 1.3575 -2.1891 21 1 13.4229 -0.2962 -0.7894 22 1 12.4085 -0.9636 -2.8884 23 6 3.4284 1.2828 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2109 2.3160 -0.0005 28 1 1.3165 4.5120 -0.0019 29 1 3.7705 4.6608 -0.0025 30 1 6.3711 4.2862 1.0240 31 1 7.1651 3.8858 -0.5178 32 1 5.5747 4.6850 -0.5171 33 1 8.0774 2.4782 -0.0035 34 1 7.7845 -0.2243 1.9532 35 1 9.3267 -0.9496 1.4386 36 1 9.2718 0.7535 1.9527 37 1 11.0766 -2.2711 -0.4287 38 1 4.0179 0.3779 -0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771885381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = 7.251907 kcal Electronic energy + Delta-G solvation = -18847.417324 eV Core-core repulsion = 15883.369729 eV Total energy + Delta-G solvation = -2964.047594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99591 -39.09810 -37.84747 -36.09408 -33.71908 -31.82480 -31.46978 -29.44940 -28.57397 -27.83191 -27.25826 -24.03004 -23.17276 -22.22037 -20.55521 -19.18207 -18.11210 -17.34615 -17.06820 -16.83383 -16.59263 -16.44814 -15.77745 -15.16755 -14.86895 -14.60196 -14.44377 -14.22375 -13.90517 -13.45279 -13.23154 -13.18952 -12.95029 -12.77521 -12.61819 -12.46809 -12.32758 -12.16810 -12.08494 -11.79057 -11.71495 -11.13313 -10.80584 -10.60519 -10.01531 -9.17749 -8.37481 -8.17737 -6.36796 0.04696 0.56624 1.41713 1.42134 1.54617 1.70959 2.18520 2.41987 2.47924 2.99883 3.09754 3.75479 3.96233 4.19337 4.21246 4.34948 4.38389 4.44337 4.48685 4.62347 4.69488 4.73740 4.75819 4.86619 4.94842 5.05476 5.09939 5.16059 5.30172 5.42660 5.49538 5.55797 5.64432 5.79903 5.87636 5.92560 6.18347 6.40524 6.54032 6.82998 7.34974 7.78854 8.86368 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028429 B = 0.003888 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.679769 B = 7199.866372 C = 7839.302877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.347 6.347 3 C 0.112 3.888 4 C -0.205 4.205 5 C -0.073 4.073 6 C -0.142 4.142 7 C 0.009 3.991 8 C 0.037 3.963 9 C -0.132 4.132 10 N -0.247 5.247 11 N -0.635 5.635 12 C 0.305 3.695 13 H -0.004 1.004 14 C -0.135 4.135 15 C -0.547 4.547 16 H 0.062 0.938 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.280 1.280 23 C -0.162 4.162 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.376 0.624 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 11.671 1.034 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.067 3.933 4 C -0.225 4.225 5 C -0.090 4.090 6 C -0.162 4.162 7 C 0.006 3.994 8 C -0.151 4.151 9 C -0.191 4.191 10 N -0.058 5.058 11 N -0.374 5.374 12 C 0.201 3.799 13 H 0.014 0.986 14 C -0.194 4.194 15 C -0.586 4.586 16 H 0.080 0.920 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.206 1.206 23 C -0.183 4.183 24 H 0.131 0.869 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.174 0.826 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.215 0.785 34 H 0.033 0.967 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.739 10.103 1.055 21.315 hybrid contribution 1.257 0.508 -0.334 1.396 sum -17.483 10.611 0.721 20.463 Atomic orbital electron populations 1.23350 0.76244 1.05384 1.02553 1.86076 1.23781 1.27378 1.88912 1.19029 0.91598 0.85389 0.97259 1.21604 1.01176 0.91585 1.08123 1.21255 0.93920 0.97982 0.95873 1.21442 0.94150 0.97448 1.03190 1.18184 0.89214 0.93215 0.98740 1.23069 0.93117 0.92383 1.06575 1.21080 1.00414 0.93994 1.03564 1.74139 0.94070 1.28899 1.08713 1.48528 0.97549 1.08450 1.82835 1.18135 0.87736 0.81448 0.92551 0.98567 1.22009 0.98121 1.01591 0.97676 1.21536 1.01734 0.98175 1.37185 0.91997 1.25748 1.02019 0.94476 0.95995 1.70038 1.36855 1.02886 1.45571 0.85285 0.78457 0.78445 0.78060 1.18963 1.20055 1.20561 1.20553 0.92360 0.98218 1.07219 0.86944 0.91230 0.91268 0.82588 0.81564 0.82768 0.89842 0.92753 0.87671 0.78531 0.96702 0.91206 0.94917 0.92385 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.35 -9.52 10.49 -92.41 -0.97 -10.49 16 3 C 0.11 3.18 6.68 22.47 0.15 3.33 16 4 C -0.21 -4.11 9.03 22.43 0.20 -3.91 16 5 C -0.07 -1.27 10.02 22.21 0.22 -1.05 16 6 C -0.14 -3.11 9.36 22.56 0.21 -2.90 16 7 C 0.01 0.28 5.87 -20.15 -0.12 0.16 16 8 C 0.04 1.33 7.10 45.31 0.32 1.65 16 9 C -0.13 -3.53 9.03 71.24 0.64 -2.88 16 10 N -0.25 -11.07 10.61 -42.82 -0.45 -11.53 16 11 N -0.64 -30.15 5.95 -172.51 -1.03 -31.18 16 12 C 0.31 16.77 3.23 44.25 0.14 16.91 16 13 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 14 C -0.13 -7.10 9.29 71.98 0.67 -6.43 16 15 C -0.55 -30.67 8.74 25.60 0.22 -30.45 16 16 H 0.06 3.35 7.78 -2.91 -0.02 3.33 16 17 C 0.02 0.99 5.30 84.65 0.45 1.43 16 18 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 19 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 C -0.16 -5.62 9.52 22.65 0.22 -5.41 16 24 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 26 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.16 2.03 6.28 -2.91 -0.02 2.02 16 28 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 29 H 0.15 2.45 6.35 -2.91 -0.02 2.43 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.60 6.35 -2.39 -0.02 1.58 16 32 H 0.10 2.06 6.47 -2.39 -0.02 2.05 16 33 H 0.38 16.25 6.36 -213.32 -1.36 14.89 16 34 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 36 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.10 4.21 7.55 -2.91 -0.02 4.19 16 Total: -1.00 -69.65 317.82 3.97 -65.67 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.29 Total: 23.25 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.45 Total: -28.15 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -1.24 Total: -95.62 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.97 Total: -10.49 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -69.65 3.97 -65.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.927 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds