Wall clock time and date at job start Mon Mar 30 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35842 * 116.99944 * 2 1 4 4 C 1.38491 * 120.13796 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.10046 * 180.02562 * 4 3 2 6 6 C 1.38419 * 120.36787 * 0.02562 * 5 4 3 7 7 C 1.37935 * 120.27342 * 359.97438 * 6 5 4 8 8 C 1.39633 * 119.89510 * 0.02562 * 7 6 5 9 9 C 1.47438 * 120.18332 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99572 * 0.02562 * 9 8 7 11 11 N 1.29752 * 120.00020 * 180.02562 * 9 8 7 12 12 N 1.40107 * 119.99867 * 180.02562 * 11 9 8 13 13 C 1.46494 * 119.99920 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47706 * 330.00658 * 13 12 11 15 15 C 1.53007 * 109.46837 * 90.00479 * 13 12 11 16 16 C 1.50695 * 109.47427 * 210.00202 * 13 12 11 17 17 H 1.08005 * 119.99770 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00488 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00234 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99672 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47429 * 90.00276 * 20 18 16 22 22 H 1.48505 * 109.47041 * 210.00367 * 20 18 16 23 23 H 1.48507 * 109.47076 * 329.99932 * 20 18 16 24 24 H 1.09003 * 109.46917 * 299.99709 * 1 2 3 25 25 H 1.08997 * 109.47167 * 60.00062 * 1 2 3 26 26 H 1.09005 * 109.47326 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.94630 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.81270 * 180.02562 * 5 4 3 29 29 H 1.08007 * 119.85782 * 180.27515 * 6 5 4 30 30 H 1.08003 * 120.05042 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47264 * 90.00155 * 10 9 8 32 32 H 1.09006 * 109.46817 * 209.99464 * 10 9 8 33 33 H 1.09000 * 109.47244 * 329.99447 * 10 9 8 34 34 H 0.97001 * 119.99675 * 0.02562 * 12 11 9 35 35 H 1.09001 * 109.46729 * 180.02562 * 15 13 12 36 36 H 1.09006 * 109.46811 * 300.00035 * 15 13 12 37 37 H 1.08992 * 109.47121 * 59.99902 * 15 13 12 38 38 H 0.97001 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2942 2.3737 -0.0005 5 6 1.9226 3.6050 -0.0011 6 6 3.3045 3.6854 -0.0016 7 6 4.0679 2.5366 -0.0011 8 6 3.4448 1.2870 -0.0005 9 6 4.2546 0.0549 0.0006 10 6 5.7591 0.1422 0.0018 11 7 3.6720 -1.1044 0.0006 12 7 4.4415 -2.2752 0.0022 13 6 3.7837 -3.5841 0.0028 14 1 2.8249 -3.5088 0.5156 15 6 3.5560 -4.0410 -1.4396 16 6 4.6569 -4.5849 0.7147 17 1 5.6067 -4.2766 1.1261 18 6 4.2432 -5.8941 0.8410 19 7 5.0055 -6.7676 1.4619 20 14 2.6001 -6.4272 0.1302 21 1 2.7910 -6.8833 -1.2701 22 1 2.0472 -7.5406 0.9424 23 1 1.6557 -5.2813 0.1531 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2156 2.3187 -0.0005 28 1 1.3320 4.5092 -0.0011 29 1 3.7868 4.6518 0.0025 30 1 5.1458 2.6035 -0.0011 31 1 6.1211 0.1636 1.0297 32 1 6.1738 -0.7256 -0.5114 33 1 6.0707 1.0515 -0.5123 34 1 5.4099 -2.2190 0.0037 35 1 3.0661 -5.0148 -1.4392 36 1 2.9244 -3.3171 -1.9546 37 1 4.5148 -4.1165 -1.9525 38 1 4.7143 -7.6886 1.5511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:10 Heat of formation + Delta-G solvation = 41.664219 kcal Electronic energy + Delta-G solvation = -19514.612143 eV Core-core repulsion = 16552.056779 eV Total energy + Delta-G solvation = -2962.555364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96574 -37.37935 -36.72595 -34.48547 -32.14537 -30.78462 -30.00265 -28.66131 -27.07634 -26.87660 -25.05646 -23.00395 -21.76699 -20.45909 -19.16439 -17.95650 -16.98259 -16.12209 -15.70093 -15.49773 -15.09700 -14.81531 -14.26822 -14.04196 -13.73207 -13.32105 -13.16323 -12.97640 -12.47930 -12.18246 -12.05010 -11.90719 -11.79045 -11.47549 -11.33026 -10.94232 -10.84690 -10.72461 -10.54748 -10.13859 -9.61434 -9.34684 -9.10495 -8.93239 -8.64734 -8.14512 -6.72659 -6.16994 -4.18402 1.18696 1.56024 3.02451 3.24301 3.34974 3.37921 3.51742 3.81957 4.05913 4.33379 4.77347 4.89242 5.10110 5.17513 5.18045 5.27088 5.32782 5.47831 5.57773 5.64306 5.68162 5.74337 5.87718 6.03692 6.24228 6.33485 6.37906 6.43464 6.54883 6.61842 6.66591 6.80754 6.89640 7.09406 7.43520 7.58794 7.66283 8.08456 8.46963 8.84088 9.31826 9.44893 10.95683 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.005120 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.011315 B = 5467.082711 C = 6205.460588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.275 6.275 3 C 0.142 3.858 4 C -0.213 4.213 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.079 4.079 8 C -0.033 4.033 9 C 0.013 3.987 10 C -0.131 4.131 11 N -0.169 5.169 12 N -0.620 5.620 13 C 0.272 3.728 14 H 0.042 0.958 15 C -0.163 4.163 16 C -0.531 4.531 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.263 1.263 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.374 0.626 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 18.833 -4.088 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.186 6.186 3 C 0.094 3.906 4 C -0.232 4.232 5 C -0.110 4.110 6 C -0.178 4.178 7 C -0.100 4.100 8 C -0.036 4.036 9 C -0.174 4.174 10 C -0.191 4.191 11 N 0.017 4.983 12 N -0.357 5.357 13 C 0.168 3.832 14 H 0.059 0.941 15 C -0.222 4.222 16 C -0.570 4.570 17 H 0.095 0.905 18 C -0.126 4.126 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.188 1.188 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.212 0.788 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.976 17.719 -4.021 19.462 hybrid contribution 0.112 -0.048 -0.374 0.393 sum -6.863 17.671 -4.395 19.460 Atomic orbital electron populations 1.23063 0.79799 1.03896 1.00437 1.86486 1.19748 1.25201 1.87118 1.19195 0.91630 0.84733 0.95090 1.21143 0.99829 0.92338 1.09895 1.20882 0.94668 0.96645 0.98798 1.20858 0.93765 0.98037 1.05131 1.21027 0.99900 0.90381 0.98677 1.17672 0.88977 0.91826 1.05107 1.22169 0.92643 0.90687 1.11898 1.20975 0.93223 1.02547 1.02312 1.74366 1.26049 0.93583 1.04311 1.48655 1.05624 1.00722 1.80710 1.18811 0.94625 0.77970 0.91788 0.94058 1.22575 1.00326 0.99042 1.00261 1.21091 1.06361 0.92958 1.36558 0.90455 1.24820 0.97074 0.96113 0.94603 1.69873 1.37400 1.03798 1.42148 0.86828 0.84596 0.78309 0.78360 1.20387 1.22257 1.18836 0.93159 0.93230 0.88340 0.85734 0.86326 0.86126 0.85154 0.91399 0.91842 0.91320 0.78791 0.93713 0.94730 0.93079 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.28 -4.65 8.37 -19.24 -0.16 -4.81 16 3 C 0.14 2.21 6.70 -38.78 -0.26 1.95 16 4 C -0.21 -2.64 9.03 -39.49 -0.36 -3.00 16 5 C -0.09 -0.98 10.03 -39.51 -0.40 -1.37 16 6 C -0.16 -1.71 10.03 -39.63 -0.40 -2.11 16 7 C -0.08 -0.98 9.36 -39.17 -0.37 -1.35 16 8 C -0.03 -0.52 5.88 -104.92 -0.62 -1.13 16 9 C 0.01 0.24 7.10 -79.72 -0.57 -0.33 16 10 C -0.13 -1.89 9.03 36.01 0.33 -1.57 16 11 N -0.17 -3.55 9.35 35.10 0.33 -3.22 16 12 N -0.62 -13.80 5.95 -5.88 -0.04 -13.84 16 13 C 0.27 6.74 2.82 -69.08 -0.20 6.55 16 14 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16 15 C -0.16 -3.73 9.00 37.16 0.33 -3.40 16 16 C -0.53 -14.89 9.32 -34.44 -0.32 -15.21 16 17 H 0.08 2.32 8.03 -52.48 -0.42 1.90 16 18 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 19 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 20 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16 21 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 22 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.12 1.27 6.30 -52.48 -0.33 0.94 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.13 1.33 6.36 -52.48 -0.33 0.99 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 33 H 0.07 0.79 6.47 -51.93 -0.34 0.46 16 34 H 0.37 7.86 6.36 -182.59 -1.16 6.69 16 35 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -31.87 308.73 -6.48 -38.34 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.97 Total: 4.99 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.92 Total: -17.59 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.07 Total: -43.27 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.16 Total: -4.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.87 -6.48 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.009 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds