Wall clock time and date at job start Mon Mar 30 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35842 * 116.99944 * 2 1 4 4 C 1.38491 * 120.13796 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.10046 * 180.02562 * 4 3 2 6 6 C 1.38419 * 120.36787 * 0.02562 * 5 4 3 7 7 C 1.37935 * 120.27342 * 359.97438 * 6 5 4 8 8 C 1.39633 * 119.89510 * 0.02562 * 7 6 5 9 9 C 1.47438 * 120.18332 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99572 * 0.02562 * 9 8 7 11 11 N 1.29752 * 120.00020 * 180.02562 * 9 8 7 12 12 N 1.40107 * 119.99867 * 180.02562 * 11 9 8 13 13 C 1.46494 * 119.99920 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47706 * 330.00658 * 13 12 11 15 15 C 1.53007 * 109.46837 * 90.00479 * 13 12 11 16 16 C 1.50695 * 109.47427 * 210.00202 * 13 12 11 17 17 H 1.08005 * 119.99770 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00488 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00234 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99672 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47429 * 90.00276 * 20 18 16 22 22 H 1.48505 * 109.47041 * 210.00367 * 20 18 16 23 23 H 1.48507 * 109.47076 * 329.99932 * 20 18 16 24 24 H 1.09003 * 109.46917 * 299.99709 * 1 2 3 25 25 H 1.08997 * 109.47167 * 60.00062 * 1 2 3 26 26 H 1.09005 * 109.47326 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.94630 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.81270 * 180.02562 * 5 4 3 29 29 H 1.08007 * 119.85782 * 180.27515 * 6 5 4 30 30 H 1.08003 * 120.05042 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47264 * 90.00155 * 10 9 8 32 32 H 1.09006 * 109.46817 * 209.99464 * 10 9 8 33 33 H 1.09000 * 109.47244 * 329.99447 * 10 9 8 34 34 H 0.97001 * 119.99675 * 0.02562 * 12 11 9 35 35 H 1.09001 * 109.46729 * 180.02562 * 15 13 12 36 36 H 1.09006 * 109.46811 * 300.00035 * 15 13 12 37 37 H 1.08992 * 109.47121 * 59.99902 * 15 13 12 38 38 H 0.97001 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2942 2.3737 -0.0005 5 6 1.9226 3.6050 -0.0011 6 6 3.3045 3.6854 -0.0016 7 6 4.0679 2.5366 -0.0011 8 6 3.4448 1.2870 -0.0005 9 6 4.2546 0.0549 0.0006 10 6 5.7591 0.1422 0.0018 11 7 3.6720 -1.1044 0.0006 12 7 4.4415 -2.2752 0.0022 13 6 3.7837 -3.5841 0.0028 14 1 2.8249 -3.5088 0.5156 15 6 3.5560 -4.0410 -1.4396 16 6 4.6569 -4.5849 0.7147 17 1 5.6067 -4.2766 1.1261 18 6 4.2432 -5.8941 0.8410 19 7 5.0055 -6.7676 1.4619 20 14 2.6001 -6.4272 0.1302 21 1 2.7910 -6.8833 -1.2701 22 1 2.0472 -7.5406 0.9424 23 1 1.6557 -5.2813 0.1531 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2156 2.3187 -0.0005 28 1 1.3320 4.5092 -0.0011 29 1 3.7868 4.6518 0.0025 30 1 5.1458 2.6035 -0.0011 31 1 6.1211 0.1636 1.0297 32 1 6.1738 -0.7256 -0.5114 33 1 6.0707 1.0515 -0.5123 34 1 5.4099 -2.2190 0.0037 35 1 3.0661 -5.0148 -1.4392 36 1 2.9244 -3.3171 -1.9546 37 1 4.5148 -4.1165 -1.9525 38 1 4.7143 -7.6886 1.5511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:09 Heat of formation + Delta-G solvation = 20.319607 kcal Electronic energy + Delta-G solvation = -19515.537715 eV Core-core repulsion = 16552.056779 eV Total energy + Delta-G solvation = -2963.480936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99318 -38.63957 -37.99156 -36.21891 -34.01536 -32.20715 -30.99056 -29.90126 -28.48336 -27.90099 -27.13583 -24.17215 -22.72952 -22.22596 -20.54530 -19.24244 -18.55449 -17.63210 -17.17604 -16.52961 -16.47100 -16.01314 -15.59513 -15.22021 -15.14014 -14.84877 -14.57772 -14.31485 -14.09527 -13.72160 -13.41946 -13.34944 -12.91961 -12.82327 -12.69587 -12.31189 -12.21204 -11.94214 -11.87686 -11.78515 -11.52189 -11.27521 -10.83617 -10.63055 -10.00301 -9.19949 -8.37940 -8.21458 -6.43879 0.15214 0.61264 1.28763 1.35105 1.46207 1.79145 2.24903 2.27701 2.58428 2.98087 3.04440 3.70654 3.98154 4.15941 4.31118 4.32935 4.41494 4.44158 4.46918 4.52483 4.59367 4.69242 4.72080 4.74388 4.76326 4.78556 4.96780 5.07012 5.22112 5.30082 5.45742 5.50848 5.55467 5.66224 5.84399 6.00356 6.13159 6.51617 6.64382 6.67849 7.23114 7.84109 8.78726 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.005120 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.011315 B = 5467.082711 C = 6205.460588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.314 6.314 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.078 4.078 6 C -0.158 4.158 7 C -0.070 4.070 8 C -0.081 4.081 9 C 0.042 3.958 10 C -0.133 4.133 11 N -0.220 5.220 12 N -0.642 5.642 13 C 0.284 3.716 14 H 0.021 0.979 15 C -0.154 4.154 16 C -0.535 4.535 17 H 0.040 0.960 18 C 0.025 3.975 19 N -0.940 5.940 20 Si 0.950 3.050 21 H -0.260 1.260 22 H -0.291 1.291 23 H -0.254 1.254 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.372 0.628 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 22.201 -5.135 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.226 6.226 3 C 0.073 3.927 4 C -0.238 4.238 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.091 4.091 8 C -0.084 4.084 9 C -0.147 4.147 10 C -0.192 4.192 11 N -0.031 5.031 12 N -0.380 5.380 13 C 0.178 3.822 14 H 0.039 0.961 15 C -0.212 4.212 16 C -0.574 4.574 17 H 0.058 0.942 18 C -0.174 4.174 19 N -0.579 5.579 20 Si 0.776 3.224 21 H -0.185 1.185 22 H -0.218 1.218 23 H -0.179 1.179 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.333 21.113 -5.076 23.259 hybrid contribution 0.563 -0.707 0.018 0.904 sum -7.770 20.406 -5.059 22.413 Atomic orbital electron populations 1.23247 0.78031 1.04372 1.02072 1.86424 1.21920 1.26705 1.87543 1.19563 0.92057 0.85316 0.95813 1.21432 1.00854 0.91956 1.09535 1.21399 0.95231 0.97207 0.95831 1.21315 0.93895 0.98886 1.03483 1.21353 1.01233 0.89591 0.96888 1.17962 0.89425 0.92042 1.08999 1.22987 0.94571 0.90738 1.06448 1.21070 0.91230 1.03820 1.03096 1.74440 1.26072 0.93850 1.08727 1.48254 1.05306 1.00692 1.83709 1.18404 0.92842 0.78786 0.92169 0.96092 1.22434 1.00655 0.99100 0.99052 1.21317 1.05467 0.94144 1.36520 0.94155 1.25658 1.00823 0.96067 0.94902 1.70003 1.39594 1.04387 1.43895 0.85838 0.80066 0.78091 0.78369 1.18542 1.21832 1.17864 0.91617 0.91338 0.88606 0.83821 0.82798 0.82591 0.83042 0.90707 0.92840 0.87824 0.78942 0.93891 0.93369 0.92927 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.31 -10.67 8.37 -91.78 -0.77 -11.44 16 3 C 0.12 3.62 6.70 22.79 0.15 3.77 16 4 C -0.22 -4.79 9.03 22.33 0.20 -4.59 16 5 C -0.08 -1.31 10.03 22.31 0.22 -1.09 16 6 C -0.16 -2.63 10.03 22.24 0.22 -2.41 16 7 C -0.07 -1.51 9.36 22.53 0.21 -1.29 16 8 C -0.08 -2.44 5.88 -20.06 -0.12 -2.56 16 9 C 0.04 1.47 7.10 45.29 0.32 1.79 16 10 C -0.13 -3.73 9.03 71.24 0.64 -3.09 16 11 N -0.22 -9.48 9.35 -42.85 -0.40 -9.88 16 12 N -0.64 -29.83 5.95 -172.53 -1.03 -30.85 16 13 C 0.28 14.50 2.82 44.25 0.12 14.63 16 14 H 0.02 1.15 7.20 -2.39 -0.02 1.14 16 15 C -0.15 -7.05 9.00 71.98 0.65 -6.40 16 16 C -0.54 -31.42 9.32 25.60 0.24 -31.19 16 17 H 0.04 2.59 8.03 -2.91 -0.02 2.56 16 18 C 0.02 1.44 5.45 84.66 0.46 1.90 16 19 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 20 Si 0.95 45.51 24.37 68.60 1.67 47.18 16 21 H -0.26 -11.67 6.87 99.48 0.68 -10.99 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.73 6.53 99.48 0.65 -11.09 16 24 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 25 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 26 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.14 2.47 6.30 -2.91 -0.02 2.45 16 28 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.15 2.46 6.36 -2.91 -0.02 2.44 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.62 6.35 -2.38 -0.02 1.61 16 33 H 0.10 2.12 6.47 -2.39 -0.02 2.11 16 34 H 0.37 16.54 6.36 -213.31 -1.36 15.19 16 35 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -72.68 308.73 3.86 -68.82 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.36 Total: 23.42 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.44 Total: -29.00 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -1.13 Total: -98.99 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.77 Total: -11.44 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -72.68 3.86 -68.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.142 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds