Wall clock time and date at job start Mon Mar 30 2020 06:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35842 * 116.99693 * 2 1 4 4 C 1.38499 * 120.13859 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.09941 * 180.25649 * 4 3 2 6 6 C 1.38427 * 120.37049 * 359.43825 * 5 4 3 7 7 C 1.50701 * 119.86715 * 180.30513 * 6 5 4 8 8 C 1.37940 * 120.26766 * 0.56270 * 6 5 4 9 9 C 1.39634 * 119.89818 * 359.72107 * 8 6 5 10 10 C 1.47436 * 120.18352 * 179.97438 * 9 8 6 11 11 N 1.29756 * 120.00026 * 180.02562 * 10 9 8 12 12 N 1.40095 * 119.99993 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00013 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46703 * 329.99546 * 13 12 11 15 15 C 1.52993 * 109.47358 * 90.00067 * 13 12 11 16 16 C 1.50706 * 109.47019 * 209.99813 * 13 12 11 17 17 H 1.08000 * 119.99631 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99954 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99982 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99899 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47518 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47108 * 120.00458 * 20 18 16 23 23 H 1.48504 * 109.47328 * 240.00278 * 20 18 16 24 24 H 1.09006 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47541 * 300.00011 * 1 2 3 26 26 H 1.09005 * 109.47300 * 60.00170 * 1 2 3 27 27 H 1.08002 * 119.94672 * 359.97129 * 4 3 2 28 28 H 1.07996 * 119.81646 * 179.70638 * 5 4 3 29 29 H 1.09000 * 109.47073 * 270.25698 * 7 6 5 30 30 H 1.09003 * 109.46795 * 30.25266 * 7 6 5 31 31 H 1.08997 * 109.46937 * 150.25307 * 7 6 5 32 32 H 1.08005 * 120.04974 * 179.74981 * 8 6 5 33 33 H 1.08005 * 119.99812 * 0.02562 * 10 9 8 34 34 H 0.97002 * 120.00011 * 0.02562 * 12 11 10 35 35 H 1.09006 * 109.47087 * 180.02562 * 15 13 12 36 36 H 1.09004 * 109.47270 * 299.99959 * 15 13 12 37 37 H 1.08997 * 109.47639 * 60.00052 * 15 13 12 38 38 H 0.97001 * 119.99563 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2941 2.3737 0.0005 5 6 1.9224 3.6050 -0.0048 6 6 3.3043 3.6856 0.0010 7 6 3.9775 5.0339 0.0020 8 6 4.0678 2.5367 0.0004 9 6 3.4448 1.2870 -0.0001 10 6 4.2547 0.0550 -0.0012 11 7 3.6720 -1.1044 -0.0022 12 7 4.4416 -2.2750 -0.0038 13 6 3.7838 -3.5840 -0.0055 14 1 2.8255 -3.5097 0.5086 15 6 3.5546 -4.0379 -1.4484 16 6 4.6578 -4.5864 0.7035 17 1 5.6080 -4.2788 1.1146 18 6 4.2439 -5.8956 0.8283 19 7 3.0866 -6.2698 0.3281 20 14 5.3276 -7.1381 1.7064 21 1 6.5688 -6.4697 2.1734 22 1 4.5968 -7.6951 2.8731 23 1 5.6784 -8.2371 0.7714 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2155 2.3187 0.0005 28 1 1.3319 4.5092 -0.0092 29 1 4.1400 5.3596 -1.0254 30 1 3.3433 5.7562 0.5161 31 1 4.9359 4.9611 0.5161 32 1 5.1458 2.6037 0.0009 33 1 5.3329 0.1176 -0.0012 34 1 5.4100 -2.2189 -0.0038 35 1 3.0648 -5.0117 -1.4496 36 1 2.9225 -3.3130 -1.9613 37 1 4.5129 -4.1122 -1.9625 38 1 2.7956 -7.1910 0.4156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771887395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:41 Heat of formation + Delta-G solvation = 26.364515 kcal Electronic energy + Delta-G solvation = -19045.242724 eV Core-core repulsion = 16082.023915 eV Total energy + Delta-G solvation = -2963.218809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89221 -37.35881 -36.28008 -34.10132 -32.19361 -31.43269 -30.28103 -27.62310 -27.09092 -25.69099 -25.18685 -23.07287 -21.57953 -20.29953 -19.58715 -17.72455 -16.87519 -16.19013 -15.38222 -15.24239 -14.98361 -14.74884 -14.17508 -13.72666 -13.66165 -13.53999 -12.98564 -12.60023 -12.44401 -12.11949 -12.03377 -11.74827 -11.39959 -11.34026 -11.03808 -10.82145 -10.73971 -10.62291 -10.46845 -10.20876 -10.15857 -9.29993 -8.98787 -8.79702 -8.47285 -7.91024 -6.62407 -6.10551 -4.18378 1.27676 1.60676 3.15790 3.24955 3.32458 3.36042 3.63687 3.92732 4.14104 4.39656 4.90195 4.92633 5.04940 5.21543 5.22757 5.36254 5.37855 5.43769 5.58271 5.68592 5.75207 5.77528 5.93411 6.00653 6.22827 6.35563 6.60139 6.69478 6.81862 6.94977 7.06237 7.10621 7.21976 7.62555 7.76810 7.85097 7.92145 8.21224 8.37265 8.90554 9.45855 9.48900 10.95261 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032089 B = 0.004056 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.371606 B = 6900.986854 C = 7452.624026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.274 6.274 3 C 0.137 3.863 4 C -0.209 4.209 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.105 4.105 8 C -0.079 4.079 9 C -0.034 4.034 10 C -0.024 4.024 11 N -0.163 5.163 12 N -0.626 5.626 13 C 0.298 3.702 14 H 0.042 0.958 15 C -0.149 4.149 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.365 0.635 35 H 0.089 0.911 36 H 0.013 0.987 37 H 0.024 0.976 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 18.103 -1.301 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.184 6.184 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.162 4.162 8 C -0.099 4.099 9 C -0.037 4.037 10 C -0.231 4.231 11 N 0.023 4.977 12 N -0.362 5.362 13 C 0.196 3.804 14 H 0.060 0.940 15 C -0.208 4.208 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.430 17.015 -1.316 17.407 hybrid contribution 1.479 -0.335 0.416 1.573 sum -1.951 16.680 -0.900 16.817 Atomic orbital electron populations 1.23061 0.79814 1.03982 1.00271 1.86499 1.19731 1.25087 1.87100 1.19206 0.91696 0.84734 0.95523 1.21123 0.99781 0.92279 1.09637 1.20722 0.93835 0.96662 0.99828 1.19588 0.93532 0.95113 1.04721 1.20669 1.00188 0.93507 1.01806 1.20798 0.99425 0.89952 0.99767 1.17821 0.89212 0.92181 1.04450 1.23298 0.95966 0.90223 1.13634 1.74245 1.27021 0.94177 1.02217 1.49149 1.05190 1.01510 1.80354 1.18495 0.93884 0.75147 0.92872 0.93988 1.22189 0.98725 1.02088 0.97832 1.21304 1.05148 0.93778 1.36548 0.92213 1.24857 0.95271 0.98094 0.95463 1.69908 1.19752 1.17856 1.44908 0.86386 0.80404 0.80964 0.79302 1.19789 1.20860 1.20868 0.88208 0.93286 0.93328 0.85738 0.86431 0.91760 0.92053 0.91845 0.85499 0.88307 0.79896 0.89270 0.96831 0.95673 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.27 -4.92 8.37 -19.24 -0.16 -5.08 16 3 C 0.14 2.25 6.70 -38.78 -0.26 1.99 16 4 C -0.21 -2.77 9.03 -39.49 -0.36 -3.13 16 5 C -0.09 -1.07 9.68 -39.51 -0.38 -1.45 16 6 C -0.13 -1.52 5.88 -104.66 -0.61 -2.13 16 7 C -0.10 -0.89 10.00 36.01 0.36 -0.53 16 8 C -0.08 -1.04 9.43 -39.17 -0.37 -1.41 16 9 C -0.03 -0.56 5.88 -104.92 -0.62 -1.17 16 10 C -0.02 -0.44 10.75 -14.68 -0.16 -0.60 16 11 N -0.16 -3.58 9.35 32.15 0.30 -3.28 16 12 N -0.63 -14.57 6.10 -5.88 -0.04 -14.61 16 13 C 0.30 7.85 3.23 -69.08 -0.22 7.63 16 14 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.15 -3.79 9.29 37.15 0.35 -3.44 16 16 C -0.53 -14.52 8.74 -34.44 -0.30 -14.82 16 17 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 26 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 27 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.10 1.62 8.02 -52.48 -0.42 1.20 16 34 H 0.37 7.87 8.58 -182.60 -1.57 6.31 16 35 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -30.50 323.11 -7.87 -38.37 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.77 Total: 4.13 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.68 Total: -16.05 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.89 Total: -42.28 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.16 Total: -5.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.50 -7.87 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.738 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds