Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29763 * 120.00026 * 2 1 4 4 N 1.40098 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99659 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47637 * 330.00145 * 5 4 3 7 7 C 1.53004 * 109.46706 * 90.00576 * 5 4 3 8 8 C 1.50697 * 109.47125 * 209.99864 * 5 4 3 9 9 H 1.08004 * 119.99813 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00116 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00085 * 359.97438 * 10 8 5 12 12 Si 1.86809 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47043 * 59.99884 * 12 10 8 14 14 H 1.48496 * 109.46652 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46848 * 299.99604 * 12 10 8 16 16 C 1.47439 * 120.00133 * 180.02562 * 2 1 3 17 17 C 1.39638 * 120.17934 * 359.97438 * 16 2 1 18 18 C 1.37931 * 119.89110 * 180.26259 * 17 16 2 19 19 C 1.38428 * 120.27204 * 359.41689 * 18 17 16 20 20 C 1.50699 * 119.81262 * 180.32575 * 19 18 17 21 21 C 1.38239 * 120.37007 * 0.61004 * 19 18 17 22 22 C 1.38489 * 120.09779 * 359.67354 * 21 19 18 23 23 O 1.35852 * 120.13584 * 180.02562 * 22 21 19 24 24 H 1.09001 * 109.47367 * 269.99951 * 1 2 3 25 25 H 1.09008 * 109.46828 * 29.99974 * 1 2 3 26 26 H 1.08998 * 109.47531 * 149.99439 * 1 2 3 27 27 H 0.96996 * 119.99900 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47563 * 59.99971 * 7 5 4 29 29 H 1.09003 * 109.46986 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.46828 * 299.99648 * 7 5 4 31 31 H 0.97003 * 120.00440 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.05068 * 359.97438 * 17 16 2 33 33 H 1.08001 * 119.86219 * 179.70174 * 18 17 16 34 34 H 1.08996 * 109.47672 * 270.28045 * 20 19 18 35 35 H 1.09005 * 109.47103 * 30.28399 * 20 19 18 36 36 H 1.09008 * 109.46774 * 150.27777 * 20 19 18 37 37 H 1.07995 * 119.94972 * 179.69864 * 21 19 18 38 38 H 0.96705 * 113.99497 * 269.97944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 -0.0005 5 6 2.1878 3.6057 0.0000 6 1 3.1398 3.4754 0.5145 7 6 2.4438 4.0474 -1.4423 8 6 1.3729 4.6560 0.7098 9 1 0.4062 4.4036 1.1198 10 6 1.8615 5.9392 0.8357 11 7 3.0388 6.2465 0.3368 12 14 0.8515 7.2410 1.7161 13 1 0.6040 6.8123 3.1162 14 1 1.5941 8.5270 1.7165 15 1 -0.4460 7.4182 1.0159 16 6 2.2442 -1.2768 -0.0006 17 6 1.5498 -2.4883 -0.0006 18 6 2.2455 -3.6793 0.0044 19 6 3.6297 -3.6790 -0.0028 20 6 4.3793 -4.9863 -0.0048 21 6 4.3283 -2.4861 -0.0023 22 6 3.6454 -1.2813 -0.0014 23 8 4.3312 -0.1086 -0.0015 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.4853 2.3370 -0.0005 28 1 1.4918 4.1778 -1.9569 29 1 2.9885 4.9916 -1.4420 30 1 3.0332 3.2877 -1.9557 31 1 3.3824 7.1493 0.4250 32 1 0.4698 -2.4927 0.0003 33 1 1.7079 -4.6161 0.0092 34 1 4.5611 -5.3026 1.0224 35 1 3.7875 -5.7437 -0.5188 36 1 5.3317 -4.8583 -0.5195 37 1 5.4083 -2.4937 -0.0031 38 1 4.5300 0.2307 0.8820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771889935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = 18.321589 kcal Electronic energy + Delta-G solvation = -19162.124503 eV Core-core repulsion = 16198.556926 eV Total energy + Delta-G solvation = -2963.567577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66279 -36.86957 -36.41452 -34.48474 -32.64422 -31.09664 -29.73879 -28.77585 -27.25864 -26.04602 -25.15860 -22.27820 -21.85855 -20.37240 -19.06247 -17.66377 -16.95992 -15.94218 -15.68660 -14.94956 -14.86666 -14.46116 -13.93182 -13.85305 -13.53878 -13.44992 -13.02219 -12.57234 -12.44414 -12.03301 -11.87637 -11.66540 -11.57759 -11.28325 -11.22900 -11.02022 -10.79806 -10.43544 -10.28371 -10.22304 -10.12614 -9.26143 -8.98374 -8.71186 -8.53419 -8.38283 -6.67265 -6.13031 -4.21778 1.18713 1.47288 3.01525 3.25116 3.29964 3.31430 3.85285 3.96477 4.36752 4.55495 4.85265 4.95435 5.04733 5.18887 5.29255 5.37650 5.50658 5.54983 5.64725 5.71941 5.81207 5.86029 6.06034 6.14643 6.26388 6.43605 6.63492 6.73967 6.79798 6.96766 7.05667 7.11036 7.19192 7.59091 7.79859 7.88717 8.13008 8.17058 8.32481 8.86097 9.37810 9.45132 10.92520 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.004016 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.879156 B = 6970.229671 C = 7362.231501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.002 4.002 3 N -0.166 5.166 4 N -0.622 5.622 5 C 0.298 3.702 6 H 0.042 0.958 7 C -0.150 4.150 8 C -0.532 4.532 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.029 4.029 17 C -0.101 4.101 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.148 4.148 22 C 0.127 3.873 23 O -0.474 6.474 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.368 0.632 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -18.161 0.372 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.188 4.188 3 N 0.020 4.980 4 N -0.359 5.359 5 C 0.196 3.804 6 H 0.060 0.940 7 C -0.210 4.210 8 C -0.571 4.571 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.729 3.271 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.032 4.032 17 C -0.121 4.121 18 C -0.149 4.149 19 C -0.088 4.088 20 C -0.167 4.167 21 C -0.167 4.167 22 C 0.079 3.921 23 O -0.284 6.284 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.205 0.795 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.408 -17.383 -0.255 17.389 hybrid contribution -1.745 0.707 0.876 2.077 sum -1.337 -16.675 0.621 16.740 Atomic orbital electron populations 1.20948 0.93458 1.02462 1.02024 1.22189 0.92515 0.90906 1.13201 1.74343 1.27374 0.92798 1.03531 1.49206 1.06262 1.00718 1.79691 1.18509 0.92678 0.76258 0.92938 0.93994 1.22197 0.99140 1.01828 0.97785 1.21209 1.04517 0.94493 1.36930 0.92355 1.24852 0.95114 0.98190 0.95404 1.69882 1.17357 1.20389 1.44644 0.86499 0.80010 0.80471 0.80072 1.20189 1.21069 1.20186 1.18723 0.91994 0.91400 1.01045 1.21074 0.99784 0.90893 1.00395 1.20825 0.93435 0.97693 1.02925 1.19733 0.93768 0.94718 1.00544 1.20756 0.99833 0.94089 1.02059 1.21219 1.00089 0.91379 1.03966 1.18572 0.89044 0.85799 0.98664 1.84847 1.74900 1.35634 1.32973 0.91639 0.91994 0.91450 0.79452 0.95709 0.89219 0.96687 0.92506 0.85533 0.86169 0.91404 0.91709 0.91729 0.85753 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.03 36.00 0.33 -1.57 16 2 C 0.00 -0.03 7.10 -79.72 -0.57 -0.60 16 3 N -0.17 -3.47 9.35 35.10 0.33 -3.14 16 4 N -0.62 -14.01 5.95 -5.88 -0.04 -14.04 16 5 C 0.30 7.69 3.23 -69.08 -0.22 7.47 16 6 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -3.81 9.29 37.16 0.35 -3.46 16 8 C -0.53 -14.38 8.74 -34.44 -0.30 -14.68 16 9 H 0.06 1.54 7.79 -52.48 -0.41 1.13 16 10 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 11 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 12 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 C -0.03 -0.46 5.88 -104.92 -0.62 -1.07 16 17 C -0.10 -1.29 9.36 -39.17 -0.37 -1.66 16 18 C -0.13 -1.47 9.67 -39.62 -0.38 -1.85 16 19 C -0.09 -0.99 5.88 -104.55 -0.62 -1.60 16 20 C -0.11 -0.91 10.00 36.01 0.36 -0.55 16 21 C -0.15 -1.95 9.62 -39.49 -0.38 -2.33 16 22 C 0.13 2.01 6.71 -38.78 -0.26 1.75 16 23 O -0.47 -8.15 11.38 -19.28 -0.22 -8.37 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.95 6.35 -51.92 -0.33 0.62 16 26 H 0.07 0.81 6.48 -51.93 -0.34 0.48 16 27 H 0.37 7.75 6.36 -182.60 -1.16 6.59 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.13 1.36 6.36 -52.49 -0.33 1.02 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.45 8.08 -51.93 -0.42 0.04 16 36 H 0.06 0.50 8.08 -51.92 -0.42 0.08 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.39 5.58 9.06 45.56 0.41 5.99 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -29.97 318.45 -7.70 -37.67 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.41 Total: 9.89 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.78 Total: -18.44 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.92 Total: -41.34 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.22 Total: -8.37 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.97 -7.70 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.996 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds