Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29763 * 120.00026 * 2 1 4 4 N 1.40098 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99659 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47637 * 330.00145 * 5 4 3 7 7 C 1.53004 * 109.46706 * 90.00576 * 5 4 3 8 8 C 1.50697 * 109.47125 * 209.99864 * 5 4 3 9 9 H 1.08004 * 119.99813 * 0.02562 * 8 5 4 10 10 C 1.37880 * 120.00116 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00085 * 359.97438 * 10 8 5 12 12 Si 1.86809 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47043 * 59.99884 * 12 10 8 14 14 H 1.48496 * 109.46652 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46848 * 299.99604 * 12 10 8 16 16 C 1.47439 * 120.00133 * 180.02562 * 2 1 3 17 17 C 1.39638 * 120.17934 * 359.97438 * 16 2 1 18 18 C 1.37931 * 119.89110 * 180.26259 * 17 16 2 19 19 C 1.38428 * 120.27204 * 359.41689 * 18 17 16 20 20 C 1.50699 * 119.81262 * 180.32575 * 19 18 17 21 21 C 1.38239 * 120.37007 * 0.61004 * 19 18 17 22 22 C 1.38489 * 120.09779 * 359.67354 * 21 19 18 23 23 O 1.35852 * 120.13584 * 180.02562 * 22 21 19 24 24 H 1.09001 * 109.47367 * 269.99951 * 1 2 3 25 25 H 1.09008 * 109.46828 * 29.99974 * 1 2 3 26 26 H 1.08998 * 109.47531 * 149.99439 * 1 2 3 27 27 H 0.96996 * 119.99900 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47563 * 59.99971 * 7 5 4 29 29 H 1.09003 * 109.46986 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.46828 * 299.99648 * 7 5 4 31 31 H 0.97003 * 120.00440 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.05068 * 359.97438 * 17 16 2 33 33 H 1.08001 * 119.86219 * 179.70174 * 18 17 16 34 34 H 1.08996 * 109.47672 * 270.28045 * 20 19 18 35 35 H 1.09005 * 109.47103 * 30.28399 * 20 19 18 36 36 H 1.09008 * 109.46774 * 150.27777 * 20 19 18 37 37 H 1.07995 * 119.94972 * 179.69864 * 21 19 18 38 38 H 0.96705 * 113.99497 * 269.97944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 -0.0005 5 6 2.1878 3.6057 0.0000 6 1 3.1398 3.4754 0.5145 7 6 2.4438 4.0474 -1.4423 8 6 1.3729 4.6560 0.7098 9 1 0.4062 4.4036 1.1198 10 6 1.8615 5.9392 0.8357 11 7 3.0388 6.2465 0.3368 12 14 0.8515 7.2410 1.7161 13 1 0.6040 6.8123 3.1162 14 1 1.5941 8.5270 1.7165 15 1 -0.4460 7.4182 1.0159 16 6 2.2442 -1.2768 -0.0006 17 6 1.5498 -2.4883 -0.0006 18 6 2.2455 -3.6793 0.0044 19 6 3.6297 -3.6790 -0.0028 20 6 4.3793 -4.9863 -0.0048 21 6 4.3283 -2.4861 -0.0023 22 6 3.6454 -1.2813 -0.0014 23 8 4.3312 -0.1086 -0.0015 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.4853 2.3370 -0.0005 28 1 1.4918 4.1778 -1.9569 29 1 2.9885 4.9916 -1.4420 30 1 3.0332 3.2877 -1.9557 31 1 3.3824 7.1493 0.4250 32 1 0.4698 -2.4927 0.0003 33 1 1.7079 -4.6161 0.0092 34 1 4.5611 -5.3026 1.0224 35 1 3.7875 -5.7437 -0.5188 36 1 5.3317 -4.8583 -0.5195 37 1 5.4083 -2.4937 -0.0031 38 1 4.5300 0.2307 0.8820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771889935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = -1.030257 kcal Electronic energy + Delta-G solvation = -19162.963662 eV Core-core repulsion = 16198.556926 eV Total energy + Delta-G solvation = -2964.406736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76733 -38.35427 -37.59934 -36.25476 -34.10451 -32.63684 -30.79108 -30.22072 -28.55500 -27.43984 -27.09087 -23.36434 -23.08724 -22.09874 -20.47426 -19.07079 -18.43138 -17.45810 -17.07919 -16.65510 -15.99864 -15.73455 -15.43814 -15.04648 -14.71287 -14.53396 -14.30798 -14.24960 -13.79249 -13.25105 -13.19189 -12.95666 -12.89875 -12.78222 -12.66920 -12.50949 -12.31762 -12.17258 -12.12026 -11.85028 -11.51282 -11.10522 -10.59641 -10.51908 -9.80638 -9.54136 -8.27991 -8.14018 -6.35393 0.07072 0.45101 1.41930 1.44115 1.52071 1.74999 2.23388 2.49889 2.86789 3.10776 3.47037 3.73516 3.98961 4.10020 4.29806 4.41231 4.50916 4.60537 4.67827 4.73687 4.76404 4.91333 4.93841 4.96594 5.10335 5.12322 5.13345 5.28407 5.34454 5.47973 5.61065 5.61604 5.69175 5.80877 5.91119 6.02625 6.21501 6.43534 6.85653 6.95072 7.36454 7.85958 8.87165 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.004016 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.879156 B = 6970.229671 C = 7362.231501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 N -0.220 5.220 4 N -0.642 5.642 5 C 0.311 3.689 6 H 0.001 0.999 7 C -0.135 4.135 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.971 3.029 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.072 4.072 17 C -0.089 4.089 18 C -0.128 4.128 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.160 4.160 22 C 0.105 3.895 23 O -0.497 6.497 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.371 0.629 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -21.118 0.765 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 N -0.031 5.031 4 N -0.379 5.379 5 C 0.207 3.793 6 H 0.019 0.981 7 C -0.194 4.194 8 C -0.588 4.588 9 H 0.078 0.922 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.795 3.205 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.075 4.075 17 C -0.109 4.109 18 C -0.146 4.146 19 C -0.075 4.075 20 C -0.167 4.167 21 C -0.179 4.179 22 C 0.058 3.942 23 O -0.308 6.308 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.209 0.791 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.120 -20.363 0.136 20.394 hybrid contribution -1.215 1.230 0.753 1.886 sum -2.335 -19.133 0.889 19.296 Atomic orbital electron populations 1.21053 0.91194 1.03578 1.03233 1.22998 0.94500 0.90880 1.07567 1.74403 1.27882 0.92985 1.07848 1.48639 1.05855 1.00514 1.82939 1.18038 0.91163 0.77959 0.92142 0.98099 1.22018 0.98783 1.00562 0.98076 1.21502 1.04755 0.95269 1.37323 0.92154 1.25724 0.96142 1.00265 0.95990 1.70017 1.18816 1.20892 1.45547 0.85424 0.78588 0.77581 0.78888 1.19680 1.20607 1.19277 1.18924 0.92203 0.91653 1.04687 1.21400 1.01071 0.90085 0.98336 1.21284 0.93458 0.98592 1.01281 1.20228 0.94400 0.95379 0.97491 1.20855 0.99990 0.92531 1.03367 1.21401 1.00803 0.91221 1.04428 1.18966 0.89572 0.86060 0.99644 1.84813 1.75349 1.36920 1.33725 0.90243 0.92936 0.88174 0.79063 0.95363 0.91236 0.96928 0.92390 0.83062 0.82397 0.89919 0.89689 0.91252 0.84844 0.75037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.03 71.23 0.64 -3.00 16 2 C 0.03 1.04 7.10 45.29 0.32 1.36 16 3 N -0.22 -9.61 9.35 -42.85 -0.40 -10.01 16 4 N -0.64 -30.27 5.95 -172.53 -1.03 -31.30 16 5 C 0.31 16.93 3.23 44.25 0.14 17.07 16 6 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 7 C -0.13 -7.19 9.29 71.98 0.67 -6.52 16 8 C -0.55 -30.65 8.74 25.60 0.22 -30.42 16 9 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 10 C 0.02 1.05 5.30 84.66 0.45 1.50 16 11 N -0.91 -52.86 11.32 21.45 0.24 -52.62 16 12 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 C -0.07 -2.21 5.88 -20.06 -0.12 -2.33 16 17 C -0.09 -1.97 9.36 22.54 0.21 -1.76 16 18 C -0.13 -2.32 9.67 22.24 0.22 -2.11 16 19 C -0.07 -1.44 5.88 -19.82 -0.12 -1.55 16 20 C -0.11 -1.36 10.00 71.24 0.71 -0.64 16 21 C -0.16 -4.02 9.62 22.33 0.21 -3.81 16 22 C 0.10 3.33 6.71 22.79 0.15 3.49 16 23 O -0.50 -18.16 11.38 -91.89 -1.05 -19.20 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.58 6.35 -2.38 -0.02 1.57 16 26 H 0.10 2.09 6.48 -2.39 -0.02 2.07 16 27 H 0.37 16.21 6.36 -213.33 -1.36 14.85 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.15 2.54 6.36 -2.91 -0.02 2.52 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.75 8.08 -2.38 -0.02 0.73 16 36 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 37 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.39 12.48 9.06 -74.05 -0.67 11.81 16 Total: -1.00 -67.76 318.45 2.57 -65.19 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.95 Total: 31.56 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.72 Total: -28.72 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -1.18 Total: -93.93 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.05 Total: -19.20 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -67.76 2.57 -65.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.156 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds