Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29761 * 119.99659 * 2 1 4 4 N 1.40095 * 120.00302 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00390 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46342 * 329.99546 * 5 4 3 7 7 C 1.52998 * 109.47185 * 89.99481 * 5 4 3 8 8 C 1.50701 * 109.47260 * 209.99968 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.47432 * 119.99792 * 180.02562 * 2 1 3 17 17 C 1.39628 * 120.18505 * 359.72440 * 16 2 1 18 18 C 1.37937 * 119.89819 * 179.76903 * 17 16 2 19 19 C 1.50695 * 119.87138 * 180.24878 * 18 17 16 20 20 C 1.38433 * 120.26549 * 0.50883 * 18 17 16 21 21 C 1.38248 * 120.37177 * 359.74597 * 20 18 17 22 22 C 1.38498 * 120.09385 * 359.97438 * 21 20 18 23 23 O 1.35849 * 120.12697 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47110 * 89.99847 * 1 2 3 25 25 H 1.09001 * 109.47281 * 209.99408 * 1 2 3 26 26 H 1.08999 * 109.47221 * 329.99835 * 1 2 3 27 27 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 28 28 H 1.09005 * 109.46870 * 300.00240 * 7 5 4 29 29 H 1.08998 * 109.47156 * 60.00179 * 7 5 4 30 30 H 1.09004 * 109.46783 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 32 32 H 1.08004 * 120.05345 * 0.02562 * 17 16 2 33 33 H 1.09000 * 109.47609 * 270.25908 * 19 18 17 34 34 H 1.09004 * 109.46620 * 30.25761 * 19 18 17 35 35 H 1.09004 * 109.47165 * 150.25244 * 19 18 17 36 36 H 1.07993 * 119.81194 * 179.71948 * 20 18 17 37 37 H 1.07990 * 119.94790 * 179.97438 * 21 20 18 38 38 H 0.96701 * 113.99742 * 270.02071 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4752 0.5150 7 6 2.4428 4.0481 -1.4412 8 6 1.3732 4.6558 0.7120 9 1 0.4064 4.4032 1.1219 10 6 1.8595 5.9401 0.8335 11 7 3.0366 6.2477 0.3340 12 14 0.8464 7.2435 1.7078 13 1 0.5981 6.8198 3.1093 14 1 1.5868 8.5308 1.7042 15 1 -0.4506 7.4160 1.0055 16 6 2.2441 -1.2768 -0.0006 17 6 1.5499 -2.4883 0.0047 18 6 2.2455 -3.6794 -0.0007 19 6 1.4955 -4.9865 -0.0007 20 6 3.6298 -3.6790 -0.0007 21 6 4.3284 -2.4860 -0.0006 22 6 3.6453 -1.2812 -0.0010 23 8 4.3311 -0.1085 -0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0005 28 1 3.0319 3.2886 -1.9553 29 1 1.4904 4.1786 -1.9550 30 1 2.9881 4.9919 -1.4407 31 1 3.3785 7.1514 0.4192 32 1 0.4698 -2.4927 0.0088 33 1 1.3147 -5.3017 1.0270 34 1 0.5427 -4.8586 -0.5145 35 1 2.0866 -5.7445 -0.5146 36 1 4.1670 -4.6158 -0.0003 37 1 5.4083 -2.4936 -0.0001 38 1 4.5293 0.2307 0.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771891311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = 18.414433 kcal Electronic energy + Delta-G solvation = -19195.221506 eV Core-core repulsion = 16231.657956 eV Total energy + Delta-G solvation = -2963.563551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66082 -36.85027 -36.49156 -34.41616 -32.19937 -31.52834 -30.33526 -28.30212 -27.00356 -25.93104 -25.18435 -23.00160 -21.46244 -20.33816 -18.90739 -17.99630 -16.77946 -15.94086 -15.51152 -15.10073 -14.82166 -14.40187 -14.00530 -13.89450 -13.55259 -13.39265 -13.07204 -12.54668 -12.49269 -12.07549 -11.83131 -11.63897 -11.50479 -11.28857 -11.26941 -11.02448 -10.81320 -10.41473 -10.28078 -10.22389 -10.15385 -9.26976 -9.00075 -8.81676 -8.50140 -8.27629 -6.69619 -6.13260 -4.22091 1.20990 1.44099 3.02182 3.24957 3.29842 3.31233 3.84362 3.95379 4.36415 4.60896 4.88079 4.94258 4.96137 5.18682 5.32858 5.33829 5.52082 5.55501 5.67922 5.73143 5.80085 5.86426 6.06254 6.15280 6.30880 6.35822 6.63557 6.74936 6.79417 6.96714 7.05556 7.10822 7.19007 7.58735 7.79543 7.88435 8.13948 8.16537 8.32012 8.85651 9.36892 9.44841 10.92275 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036801 B = 0.004095 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.671001 B = 6835.694553 C = 7272.281707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.003 4.003 3 N -0.164 5.164 4 N -0.621 5.621 5 C 0.298 3.702 6 H 0.042 0.958 7 C -0.150 4.150 8 C -0.532 4.532 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.020 4.020 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.144 4.144 22 C 0.118 3.882 23 O -0.474 6.474 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.368 0.632 28 H 0.014 0.986 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.265 0.735 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -18.109 0.366 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.189 4.189 3 N 0.021 4.979 4 N -0.358 5.358 5 C 0.196 3.804 6 H 0.060 0.940 7 C -0.209 4.209 8 C -0.572 4.572 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.022 4.022 17 C -0.125 4.125 18 C -0.100 4.100 19 C -0.166 4.166 20 C -0.136 4.136 21 C -0.162 4.162 22 C 0.070 3.930 23 O -0.284 6.284 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.206 0.794 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.666 -17.330 -0.261 17.345 hybrid contribution -1.677 0.703 0.878 2.019 sum -2.343 -16.628 0.617 16.803 Atomic orbital electron populations 1.20952 0.93449 1.02531 1.01996 1.22179 0.92526 0.90888 1.13325 1.74343 1.27373 0.92802 1.03389 1.49217 1.06273 1.00720 1.79600 1.18518 0.92687 0.76247 0.92965 0.94002 1.22194 0.99145 1.01839 0.97742 1.21204 1.04570 0.94445 1.36931 0.92367 1.24848 0.95126 0.98191 0.95388 1.69882 1.17416 1.20339 1.44631 0.86499 0.80025 0.80479 0.80044 1.20190 1.21064 1.20184 1.18703 0.92005 0.91317 1.00218 1.20956 0.99648 0.90417 1.01512 1.19717 0.93787 0.94979 1.01504 1.20736 0.99803 0.94057 1.02045 1.20834 0.93428 0.97406 1.01977 1.21340 1.00230 0.91848 1.02831 1.18590 0.89056 0.85881 0.99471 1.84848 1.74874 1.35698 1.32951 0.91762 0.91407 0.91866 0.79444 0.96689 0.95695 0.89193 0.92501 0.85600 0.91459 0.91704 0.91790 0.86242 0.85683 0.75571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.04 36.01 0.33 -1.58 16 2 C 0.00 -0.05 7.10 -79.72 -0.57 -0.62 16 3 N -0.16 -3.44 9.35 35.10 0.33 -3.11 16 4 N -0.62 -13.97 5.95 -5.88 -0.03 -14.00 16 5 C 0.30 7.68 3.23 -69.08 -0.22 7.45 16 6 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -3.79 9.29 37.16 0.35 -3.45 16 8 C -0.53 -14.36 8.74 -34.44 -0.30 -14.66 16 9 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 10 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 11 N -0.89 -24.76 11.31 55.43 0.63 -24.14 16 12 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 C -0.02 -0.31 5.88 -104.93 -0.62 -0.93 16 17 C -0.10 -1.36 9.01 -39.17 -0.35 -1.71 16 18 C -0.10 -1.13 5.87 -104.66 -0.61 -1.75 16 19 C -0.11 -0.89 10.00 36.00 0.36 -0.53 16 20 C -0.12 -1.33 9.68 -39.51 -0.38 -1.72 16 21 C -0.14 -1.88 9.97 -39.48 -0.39 -2.28 16 22 C 0.12 1.86 6.71 -38.78 -0.26 1.60 16 23 O -0.47 -8.16 11.38 -19.27 -0.22 -8.38 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 26 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 27 H 0.37 7.74 6.36 -182.60 -1.16 6.58 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.13 1.39 6.35 -52.48 -0.33 1.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.39 5.58 9.06 45.56 0.41 5.99 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -29.90 318.43 -7.70 -37.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.40 Total: 9.89 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.78 Total: -18.43 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.92 Total: -41.25 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.22 Total: -8.38 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.90 -7.70 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771891311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.019 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds