Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29761 * 119.99659 * 2 1 4 4 N 1.40095 * 120.00302 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00390 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46342 * 329.99546 * 5 4 3 7 7 C 1.52998 * 109.47185 * 89.99481 * 5 4 3 8 8 C 1.50701 * 109.47260 * 209.99968 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.47432 * 119.99792 * 180.02562 * 2 1 3 17 17 C 1.39628 * 120.18505 * 359.72440 * 16 2 1 18 18 C 1.37937 * 119.89819 * 179.76903 * 17 16 2 19 19 C 1.50695 * 119.87138 * 180.24878 * 18 17 16 20 20 C 1.38433 * 120.26549 * 0.50883 * 18 17 16 21 21 C 1.38248 * 120.37177 * 359.74597 * 20 18 17 22 22 C 1.38498 * 120.09385 * 359.97438 * 21 20 18 23 23 O 1.35849 * 120.12697 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47110 * 89.99847 * 1 2 3 25 25 H 1.09001 * 109.47281 * 209.99408 * 1 2 3 26 26 H 1.08999 * 109.47221 * 329.99835 * 1 2 3 27 27 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 28 28 H 1.09005 * 109.46870 * 300.00240 * 7 5 4 29 29 H 1.08998 * 109.47156 * 60.00179 * 7 5 4 30 30 H 1.09004 * 109.46783 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 32 32 H 1.08004 * 120.05345 * 0.02562 * 17 16 2 33 33 H 1.09000 * 109.47609 * 270.25908 * 19 18 17 34 34 H 1.09004 * 109.46620 * 30.25761 * 19 18 17 35 35 H 1.09004 * 109.47165 * 150.25244 * 19 18 17 36 36 H 1.07993 * 119.81194 * 179.71948 * 20 18 17 37 37 H 1.07990 * 119.94790 * 179.97438 * 21 20 18 38 38 H 0.96701 * 113.99742 * 270.02071 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4752 0.5150 7 6 2.4428 4.0481 -1.4412 8 6 1.3732 4.6558 0.7120 9 1 0.4064 4.4032 1.1219 10 6 1.8595 5.9401 0.8335 11 7 3.0366 6.2477 0.3340 12 14 0.8464 7.2435 1.7078 13 1 0.5981 6.8198 3.1093 14 1 1.5868 8.5308 1.7042 15 1 -0.4506 7.4160 1.0055 16 6 2.2441 -1.2768 -0.0006 17 6 1.5499 -2.4883 0.0047 18 6 2.2455 -3.6794 -0.0007 19 6 1.4955 -4.9865 -0.0007 20 6 3.6298 -3.6790 -0.0007 21 6 4.3284 -2.4860 -0.0006 22 6 3.6453 -1.2812 -0.0010 23 8 4.3311 -0.1085 -0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0005 28 1 3.0319 3.2886 -1.9553 29 1 1.4904 4.1786 -1.9550 30 1 2.9881 4.9919 -1.4407 31 1 3.3785 7.1514 0.4192 32 1 0.4698 -2.4927 0.0088 33 1 1.3147 -5.3017 1.0270 34 1 0.5427 -4.8586 -0.5145 35 1 2.0866 -5.7445 -0.5146 36 1 4.1670 -4.6158 -0.0003 37 1 5.4083 -2.4936 -0.0001 38 1 4.5293 0.2307 0.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771891311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -0.831164 kcal Electronic energy + Delta-G solvation = -19196.056058 eV Core-core repulsion = 16231.657956 eV Total energy + Delta-G solvation = -2964.398103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76724 -38.34531 -37.66556 -36.21888 -33.85821 -32.48628 -31.86050 -29.61036 -28.51775 -27.30173 -26.85735 -24.23680 -22.58184 -22.11592 -20.33879 -19.27202 -18.44802 -17.32495 -17.05027 -16.55684 -16.15308 -15.71354 -15.35514 -15.03080 -14.72990 -14.58274 -14.33853 -14.22438 -13.86649 -13.30864 -13.17886 -12.95142 -12.88063 -12.75518 -12.62642 -12.40449 -12.30346 -12.23188 -12.10685 -11.88951 -11.50523 -11.10889 -10.59716 -10.52548 -9.99158 -9.33667 -8.30911 -8.15128 -6.35459 0.07964 0.42361 1.42033 1.44135 1.52100 1.75008 2.22373 2.49388 2.86029 3.10745 3.50718 3.71881 3.96709 4.08691 4.29096 4.43007 4.52042 4.57144 4.68642 4.70394 4.79761 4.92686 4.96289 4.97567 5.11485 5.12662 5.18684 5.29038 5.31537 5.45097 5.57322 5.61644 5.72760 5.80606 5.90637 6.02840 6.20880 6.43010 6.85193 6.96378 7.36361 7.84454 8.87124 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036801 B = 0.004095 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.671001 B = 6835.694553 C = 7272.281707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.027 3.973 3 N -0.217 5.217 4 N -0.641 5.641 5 C 0.310 3.690 6 H 0.001 0.999 7 C -0.135 4.135 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.914 5.914 12 Si 0.971 3.029 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.059 4.059 17 C -0.097 4.097 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.151 4.151 22 C 0.092 3.908 23 O -0.497 6.497 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.371 0.629 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.267 0.733 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -20.995 0.731 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 N -0.028 5.028 4 N -0.378 5.378 5 C 0.206 3.794 6 H 0.019 0.981 7 C -0.194 4.194 8 C -0.588 4.588 9 H 0.078 0.922 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.795 3.205 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.165 4.165 20 C -0.123 4.123 21 C -0.169 4.169 22 C 0.045 3.955 23 O -0.308 6.308 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.210 0.790 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.180 -20.240 0.102 20.357 hybrid contribution -1.163 1.211 0.757 1.842 sum -3.343 -19.028 0.859 19.339 Atomic orbital electron populations 1.21050 0.91222 1.03682 1.03102 1.22982 0.94493 0.90872 1.07796 1.74402 1.27870 0.92983 1.07586 1.48655 1.05879 1.00509 1.82799 1.18054 0.91182 0.77935 0.92193 0.98079 1.22013 0.98793 1.00585 0.98012 1.21495 1.04805 0.95213 1.37318 0.92164 1.25718 0.96155 1.00264 0.95961 1.70016 1.18872 1.20841 1.45537 0.85426 0.78596 0.77589 0.78880 1.19692 1.20606 1.19276 1.18900 0.92282 0.91491 1.03524 1.21248 1.00781 0.89763 0.99986 1.20175 0.94068 0.95956 0.99599 1.20817 1.00072 0.92279 1.03329 1.21300 0.93828 0.97946 0.99239 1.21545 1.01121 0.91510 1.02726 1.18987 0.89534 0.86224 1.00741 1.84816 1.75296 1.36976 1.33700 0.90531 0.88140 0.92734 0.79043 0.96914 0.95347 0.91204 0.92386 0.83466 0.90076 0.90690 0.90167 0.82866 0.84392 0.75132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.04 71.24 0.64 -3.03 16 2 C 0.03 0.97 7.10 45.29 0.32 1.29 16 3 N -0.22 -9.48 9.35 -42.85 -0.40 -9.88 16 4 N -0.64 -30.16 5.95 -172.52 -1.03 -31.19 16 5 C 0.31 16.86 3.23 44.24 0.14 17.00 16 6 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 7 C -0.13 -7.15 9.29 71.98 0.67 -6.48 16 8 C -0.55 -30.57 8.74 25.60 0.22 -30.35 16 9 H 0.06 3.24 7.79 -2.91 -0.02 3.22 16 10 C 0.02 1.06 5.30 84.65 0.45 1.51 16 11 N -0.91 -52.77 11.31 21.45 0.24 -52.53 16 12 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 C -0.06 -1.83 5.88 -20.06 -0.12 -1.95 16 17 C -0.10 -2.23 9.01 22.53 0.20 -2.03 16 18 C -0.10 -1.83 5.87 -19.89 -0.12 -1.95 16 19 C -0.11 -1.21 10.00 71.23 0.71 -0.50 16 20 C -0.10 -1.99 9.68 22.32 0.22 -1.78 16 21 C -0.15 -3.70 9.97 22.33 0.22 -3.48 16 22 C 0.09 2.92 6.71 22.79 0.15 3.08 16 23 O -0.50 -18.08 11.38 -91.85 -1.05 -19.12 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.10 2.11 6.47 -2.39 -0.02 2.10 16 26 H 0.05 1.65 6.35 -2.39 -0.02 1.63 16 27 H 0.37 16.18 6.36 -213.32 -1.36 14.83 16 28 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 3.96 6.06 -2.38 -0.01 3.94 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.15 2.65 6.35 -2.91 -0.02 2.63 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.08 0.69 8.08 -2.38 -0.02 0.67 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.14 2.93 8.06 -2.92 -0.02 2.91 16 38 H 0.39 12.40 9.06 -74.06 -0.67 11.73 16 Total: -1.00 -67.35 318.43 2.57 -64.78 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.95 Total: 31.56 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 3.72 Total: -28.67 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -1.18 Total: -93.60 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.05 Total: -19.12 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.35 2.57 -64.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771891311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.945 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds