Wall clock time and date at job start Mon Mar 30 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.53006 * 109.47262 * 239.99342 * 2 1 3 5 5 O 1.45193 * 109.46665 * 65.00332 * 4 2 1 6 6 C 1.34231 * 117.00126 * 179.97438 * 5 4 2 7 7 O 1.20833 * 119.99644 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00640 * 179.71955 * 6 5 4 9 9 C 1.52996 * 109.47298 * 180.27355 * 8 6 5 10 10 C 1.50701 * 109.46972 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00292 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99508 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47294 * 90.00145 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00005 * 14 12 10 17 17 H 1.48491 * 109.47227 * 330.00193 * 14 12 10 18 18 C 1.50701 * 109.46895 * 119.99582 * 2 1 3 19 19 C 1.38235 * 120.00116 * 59.72942 * 18 2 1 20 20 C 1.38238 * 120.00002 * 179.79162 * 19 18 2 21 21 C 1.38238 * 119.99939 * 0.43009 * 20 19 18 22 22 C 1.38234 * 120.00031 * 359.82107 * 21 20 19 23 23 C 1.38238 * 119.99837 * 239.99874 * 18 2 1 24 24 H 1.08993 * 109.47044 * 60.00710 * 1 2 3 25 25 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47089 * 300.00355 * 1 2 3 27 27 H 1.08997 * 109.46911 * 305.00293 * 4 2 1 28 28 H 1.08997 * 109.46745 * 185.00302 * 4 2 1 29 29 H 1.09000 * 109.47190 * 300.28291 * 8 6 5 30 30 H 1.09006 * 109.46468 * 60.27874 * 8 6 5 31 31 H 1.08994 * 109.47515 * 300.00215 * 9 8 6 32 32 H 1.09006 * 109.46938 * 60.00806 * 9 8 6 33 33 H 0.96999 * 119.99800 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.00052 * 359.97438 * 19 18 2 35 35 H 1.08000 * 120.00291 * 180.27927 * 20 19 18 36 36 H 1.08000 * 120.00022 * 179.83434 * 21 20 19 37 37 H 1.07996 * 120.00312 * 179.97438 * 22 21 20 38 38 H 1.07991 * 120.00008 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 1.6560 0.0284 -2.4317 6 6 2.0299 -0.4730 -3.6194 7 8 2.6571 -1.5046 -3.6691 8 6 1.6617 0.2470 -4.8910 9 6 2.1988 -0.5331 -6.0926 10 6 1.8300 0.1866 -7.3642 11 1 1.2691 1.1084 -7.3198 12 6 2.2087 -0.3317 -8.5845 13 7 2.8913 -1.4545 -8.6386 14 14 1.7522 0.5607 -10.1607 15 1 2.8277 1.5215 -10.5148 16 1 1.5887 -0.4258 -11.2585 17 1 0.4775 1.2959 -9.9618 18 6 2.0323 -0.7103 1.2305 19 6 1.6937 -2.0321 1.4522 20 6 2.1580 -2.6850 2.5788 21 6 2.9536 -2.0134 3.4882 22 6 3.2879 -0.6901 3.2692 23 6 2.8270 -0.0384 2.1404 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7996 -1.2054 29 1 0.5769 0.3246 -4.9635 30 1 2.0978 1.2460 -4.8821 31 1 3.2836 -0.6107 -6.0201 32 1 1.7628 -1.5321 -6.1015 33 1 3.1581 -1.8190 -9.4970 34 1 1.0689 -2.5556 0.7438 35 1 1.8972 -3.7190 2.7498 36 1 3.3141 -2.5226 4.3697 37 1 3.9091 -0.1652 3.9798 38 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:25 Heat of formation + Delta-G solvation = -88.953146 kcal Electronic energy + Delta-G solvation = -18552.125902 eV Core-core repulsion = 15551.613792 eV Total energy + Delta-G solvation = -3000.512110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.13910 -39.46806 -36.52168 -34.60956 -33.57035 -31.16194 -31.12711 -29.69061 -27.17006 -25.67871 -23.56648 -22.78249 -21.97042 -20.23747 -19.77541 -17.45744 -16.91674 -16.39550 -16.18159 -15.54780 -15.41871 -14.95756 -14.46286 -14.13241 -13.86862 -13.60681 -13.46357 -13.01872 -12.53653 -12.30727 -12.22859 -12.17917 -11.61501 -11.39862 -11.18576 -11.05925 -10.95692 -10.87667 -10.63584 -10.26309 -10.03277 -9.90533 -9.54940 -9.17479 -9.14396 -8.94276 -8.37378 -6.01139 -4.06013 1.09995 1.17584 2.85687 3.09955 3.31853 3.38118 3.41112 3.58344 4.43672 4.51350 4.53694 4.77653 4.84256 4.91184 4.92678 5.19546 5.26291 5.30827 5.34247 5.43593 5.54987 5.63445 5.73837 5.79829 5.83114 5.95262 6.08689 6.13462 6.20674 6.26285 6.29136 6.42377 6.67242 6.76936 6.96925 7.67087 7.74236 7.98645 8.27067 8.43529 9.01211 9.57985 11.09923 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.050512 B = 0.002971 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.193358 B = 9420.884729 C = 9632.608320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 H 0.090 0.910 4 C 0.073 3.927 5 O -0.365 6.365 6 C 0.456 3.544 7 O -0.506 6.506 8 C -0.103 4.103 9 C 0.033 3.967 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.075 4.075 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 2.158 23.776 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 H 0.108 0.892 4 C -0.002 4.002 5 O -0.283 6.283 6 C 0.299 3.701 7 O -0.393 6.393 8 C -0.140 4.140 9 C -0.005 4.005 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.131 4.131 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.561 1.697 23.663 23.861 hybrid contribution -0.027 0.204 -0.776 0.803 sum -2.588 1.902 22.886 23.111 Atomic orbital electron populations 1.21828 0.93304 1.02336 1.02513 1.20122 0.97103 0.99784 0.89913 0.89200 1.22944 1.00129 0.94819 0.82266 1.86524 1.73246 1.53301 1.15231 1.24767 0.75908 0.84338 0.85051 1.90638 1.37179 1.24037 1.87414 1.21755 1.03211 1.00636 0.88438 1.19017 0.97246 0.95338 0.88851 1.21160 1.35923 1.08761 0.90792 0.92306 1.25028 0.95075 0.94982 0.99291 1.69996 1.37861 1.19495 1.25449 0.86537 0.78856 0.79373 0.82884 1.20603 1.21192 1.19791 1.19720 0.97735 0.94344 0.95753 1.21089 0.99987 0.94276 0.97674 1.21163 0.98000 0.99926 0.94546 1.21165 0.98693 0.94908 0.99465 1.21143 1.00064 0.95000 0.97598 1.21101 0.97580 1.00045 0.94361 0.91092 0.92516 0.92420 0.91397 0.91457 0.88973 0.88993 0.95611 0.95603 0.92851 0.85901 0.85999 0.86184 0.86047 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.90 37.16 0.33 -1.09 16 2 C -0.05 -0.55 2.81 -91.77 -0.26 -0.81 16 3 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 4 C 0.07 1.02 4.58 37.16 0.17 1.19 16 5 O -0.36 -6.03 9.76 -39.26 -0.38 -6.41 16 6 C 0.46 9.11 7.96 36.00 0.29 9.40 16 7 O -0.51 -11.77 15.73 -18.76 -0.30 -12.07 16 8 C -0.10 -2.12 5.75 -27.89 -0.16 -2.28 16 9 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 10 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 C -0.08 -0.78 4.78 -104.62 -0.50 -1.28 16 19 C -0.11 -1.13 8.76 -39.58 -0.35 -1.48 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.11 -1.06 9.67 -39.58 -0.38 -1.45 16 24 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 25 H 0.06 0.55 7.37 -51.93 -0.38 0.16 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.96 7.58 -51.93 -0.39 0.56 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.12 1.16 7.16 -52.49 -0.38 0.78 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -32.42 326.57 -8.35 -40.77 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.73 Total: -2.32 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.58 Total: -14.96 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.68 Total: -18.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.42 -8.35 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.178 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds