Wall clock time and date at job start Mon Mar 30 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.53006 * 109.47262 * 239.99342 * 2 1 3 5 5 O 1.45193 * 109.46665 * 65.00332 * 4 2 1 6 6 C 1.34231 * 117.00126 * 179.97438 * 5 4 2 7 7 O 1.20833 * 119.99644 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00640 * 179.71955 * 6 5 4 9 9 C 1.52996 * 109.47298 * 180.27355 * 8 6 5 10 10 C 1.50701 * 109.46972 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00292 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99508 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47294 * 90.00145 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00005 * 14 12 10 17 17 H 1.48491 * 109.47227 * 330.00193 * 14 12 10 18 18 C 1.50701 * 109.46895 * 119.99582 * 2 1 3 19 19 C 1.38235 * 120.00116 * 59.72942 * 18 2 1 20 20 C 1.38238 * 120.00002 * 179.79162 * 19 18 2 21 21 C 1.38238 * 119.99939 * 0.43009 * 20 19 18 22 22 C 1.38234 * 120.00031 * 359.82107 * 21 20 19 23 23 C 1.38238 * 119.99837 * 239.99874 * 18 2 1 24 24 H 1.08993 * 109.47044 * 60.00710 * 1 2 3 25 25 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47089 * 300.00355 * 1 2 3 27 27 H 1.08997 * 109.46911 * 305.00293 * 4 2 1 28 28 H 1.08997 * 109.46745 * 185.00302 * 4 2 1 29 29 H 1.09000 * 109.47190 * 300.28291 * 8 6 5 30 30 H 1.09006 * 109.46468 * 60.27874 * 8 6 5 31 31 H 1.08994 * 109.47515 * 300.00215 * 9 8 6 32 32 H 1.09006 * 109.46938 * 60.00806 * 9 8 6 33 33 H 0.96999 * 119.99800 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.00052 * 359.97438 * 19 18 2 35 35 H 1.08000 * 120.00291 * 180.27927 * 20 19 18 36 36 H 1.08000 * 120.00022 * 179.83434 * 21 20 19 37 37 H 1.07996 * 120.00312 * 179.97438 * 22 21 20 38 38 H 1.07991 * 120.00008 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 1.6560 0.0284 -2.4317 6 6 2.0299 -0.4730 -3.6194 7 8 2.6571 -1.5046 -3.6691 8 6 1.6617 0.2470 -4.8910 9 6 2.1988 -0.5331 -6.0926 10 6 1.8300 0.1866 -7.3642 11 1 1.2691 1.1084 -7.3198 12 6 2.2087 -0.3317 -8.5845 13 7 2.8913 -1.4545 -8.6386 14 14 1.7522 0.5607 -10.1607 15 1 2.8277 1.5215 -10.5148 16 1 1.5887 -0.4258 -11.2585 17 1 0.4775 1.2959 -9.9618 18 6 2.0323 -0.7103 1.2305 19 6 1.6937 -2.0321 1.4522 20 6 2.1580 -2.6850 2.5788 21 6 2.9536 -2.0134 3.4882 22 6 3.2879 -0.6901 3.2692 23 6 2.8270 -0.0384 2.1404 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7996 -1.2054 29 1 0.5769 0.3246 -4.9635 30 1 2.0978 1.2460 -4.8821 31 1 3.2836 -0.6107 -6.0201 32 1 1.7628 -1.5321 -6.1015 33 1 3.1581 -1.8190 -9.4970 34 1 1.0689 -2.5556 0.7438 35 1 1.8972 -3.7190 2.7498 36 1 3.3141 -2.5226 4.3697 37 1 3.9091 -0.1652 3.9798 38 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:24 Heat of formation + Delta-G solvation = -105.607985 kcal Electronic energy + Delta-G solvation = -18552.848110 eV Core-core repulsion = 15551.613792 eV Total energy + Delta-G solvation = -3001.234318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55309 -40.34630 -37.91238 -35.65042 -35.61236 -33.13822 -31.81961 -30.47841 -28.59314 -27.32750 -24.61437 -23.88092 -23.28281 -21.45936 -21.06961 -19.11320 -18.20613 -17.75391 -17.59618 -17.03436 -16.48509 -16.21122 -15.91789 -15.36256 -14.82669 -14.64578 -14.34087 -14.26074 -14.17234 -13.68055 -13.59645 -13.19263 -12.98901 -12.83320 -12.56703 -12.50636 -12.19801 -12.00686 -11.88953 -11.76966 -11.73694 -11.48381 -11.40458 -11.24201 -10.57879 -9.83188 -9.67125 -8.20031 -6.33917 0.38347 0.48791 1.23542 1.43443 1.45992 1.56901 1.71722 2.43353 2.86078 3.13798 3.63386 3.66935 3.88025 4.02433 4.11323 4.14971 4.26940 4.29186 4.45134 4.45622 4.51812 4.54739 4.62073 4.72062 4.91081 4.93945 5.05480 5.12271 5.16522 5.28640 5.40505 5.47757 5.54985 5.57101 5.61829 5.68536 5.80617 6.10220 6.13042 6.78841 6.86504 7.36411 8.92750 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.050512 B = 0.002971 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.193358 B = 9420.884729 C = 9632.608320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 H 0.099 0.901 4 C 0.069 3.931 5 O -0.351 6.351 6 C 0.464 3.536 7 O -0.547 6.547 8 C -0.093 4.093 9 C 0.038 3.962 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.005 4.005 13 N -0.937 5.937 14 Si 0.975 3.025 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.255 1.255 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.117 0.883 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 3.952 24.830 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 H 0.117 0.883 4 C -0.004 4.004 5 O -0.268 6.268 6 C 0.309 3.691 7 O -0.437 6.437 8 C -0.131 4.131 9 C 0.000 4.000 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.799 3.201 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.179 1.179 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.412 3.523 24.751 25.232 hybrid contribution 0.262 -0.401 -0.970 1.082 sum -3.150 3.121 23.781 24.191 Atomic orbital electron populations 1.21817 0.92587 1.02482 1.02891 1.20070 0.97653 0.99782 0.88387 0.88322 1.23219 0.99828 0.95128 0.82264 1.86491 1.72417 1.52967 1.14895 1.24557 0.75021 0.83453 0.86031 1.90632 1.39149 1.25821 1.88093 1.21517 1.04538 1.00538 0.86466 1.18802 0.94858 0.94509 0.91792 1.21649 1.35729 1.09366 0.91374 0.90347 1.26120 0.94814 0.95735 1.03640 1.70164 1.39384 1.21557 1.26541 0.85298 0.79297 0.77996 0.77535 1.19698 1.21189 1.17899 1.19727 0.98820 0.94640 0.95873 1.21226 1.00582 0.94532 0.98347 1.21432 0.98031 1.00820 0.94339 1.21513 0.98001 0.95085 0.99947 1.21477 0.99902 0.95228 0.97657 1.21345 0.97282 1.00853 0.94511 0.91765 0.92552 0.90906 0.91802 0.92325 0.86476 0.86519 0.99295 0.99248 0.92758 0.86109 0.84497 0.83935 0.83795 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.90 71.98 0.64 -1.99 16 2 C -0.04 -0.84 2.81 -11.54 -0.03 -0.87 16 3 H 0.10 1.86 7.88 -2.38 -0.02 1.84 16 4 C 0.07 1.93 4.58 71.98 0.33 2.26 16 5 O -0.35 -11.34 9.76 -51.42 -0.50 -11.84 16 6 C 0.46 18.65 7.96 71.23 0.57 19.21 16 7 O -0.55 -26.34 15.73 21.94 0.35 -26.00 16 8 C -0.09 -3.79 5.75 29.85 0.17 -3.61 16 9 C 0.04 2.06 4.26 29.85 0.13 2.19 16 10 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 11 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 12 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 13 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 14 Si 0.98 43.81 29.54 68.60 2.03 45.84 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 C -0.09 -1.79 4.78 -19.86 -0.09 -1.89 16 19 C -0.13 -2.54 8.76 22.27 0.20 -2.34 16 20 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 22 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 23 C -0.12 -2.10 9.67 22.27 0.22 -1.88 16 24 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 25 H 0.06 1.04 7.37 -2.39 -0.02 1.03 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.83 7.58 -2.39 -0.02 1.82 16 28 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 29 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.12 4.18 8.14 -2.38 -0.02 4.16 16 31 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 32 H -0.01 -0.67 8.10 -2.38 -0.02 -0.69 16 33 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.12 2.31 7.16 -2.91 -0.02 2.29 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.88 7.95 -2.92 -0.02 1.85 16 Total: -1.00 -71.28 326.57 6.66 -64.61 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.02 Total: 10.00 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.49 Total: -24.27 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.35 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.16 Total: -37.84 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.28 6.66 -64.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.995 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds