Wall clock time and date at job start Mon Mar 30 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 O 1.45196 * 109.47502 * 294.99958 * 4 2 1 6 6 C 1.34232 * 117.00515 * 179.97438 * 5 4 2 7 7 O 1.20826 * 119.99755 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47041 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47248 * 180.02562 * 9 8 6 11 11 H 1.07990 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00048 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00083 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00215 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47164 * 89.99578 * 14 12 10 16 16 H 1.48493 * 109.47550 * 210.00077 * 14 12 10 17 17 H 1.48507 * 109.47188 * 330.00071 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 C 1.38236 * 119.99963 * 299.73020 * 18 2 1 20 20 C 1.38236 * 120.00036 * 179.81111 * 19 18 2 21 21 C 1.38226 * 119.99834 * 0.39071 * 20 19 18 22 22 C 1.38237 * 120.00085 * 359.86461 * 21 20 19 23 23 C 1.38229 * 120.00216 * 120.00264 * 18 2 1 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 1.09003 * 109.47375 * 299.99989 * 8 6 5 30 30 H 1.09002 * 109.47219 * 60.00272 * 8 6 5 31 31 H 1.09003 * 109.47506 * 300.00206 * 9 8 6 32 32 H 1.09001 * 109.47595 * 60.00199 * 9 8 6 33 33 H 0.97005 * 120.00051 * 179.97438 * 13 12 10 34 34 H 1.08010 * 119.99941 * 359.97438 * 19 18 2 35 35 H 1.08001 * 119.99466 * 180.23187 * 20 19 18 36 36 H 1.08005 * 120.00406 * 179.83264 * 21 20 19 37 37 H 1.07998 * 120.00065 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00084 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6558 0.0286 2.4318 6 6 2.0288 -0.4732 3.6196 7 8 2.6559 -1.5048 3.6695 8 6 1.6654 0.2499 4.8908 9 6 2.2066 -0.5275 6.0922 10 6 1.8427 0.1953 7.3636 11 1 1.2811 1.1166 7.3191 12 6 2.2257 -0.3204 8.5836 13 7 1.9085 0.3106 9.6930 14 14 3.1964 -1.9145 8.6607 15 1 4.6495 -1.6121 8.6119 16 1 2.8809 -2.6256 9.9255 17 1 2.8305 -2.7732 7.5056 18 6 2.0324 -0.7104 -1.2304 19 6 1.7031 -2.0355 -1.4464 20 6 2.1607 -2.6860 -2.5770 21 6 2.9543 -2.0139 -3.4875 22 6 3.2880 -0.6903 -3.2690 23 6 2.8272 -0.0387 -2.1403 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.1018 1.2486 4.8782 30 1 0.5809 0.3282 4.9669 31 1 1.7706 -1.5265 6.1051 32 1 3.2912 -0.6055 6.0160 33 1 2.1777 -0.0524 10.5513 34 1 1.0861 -2.5618 -0.7330 35 1 1.9003 -3.7202 -2.7475 36 1 3.3141 -2.5228 -4.3696 37 1 3.9083 -0.1652 -3.9802 38 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:27 Heat of formation + Delta-G solvation = -85.804801 kcal Electronic energy + Delta-G solvation = -18616.699183 eV Core-core repulsion = 15616.323596 eV Total energy + Delta-G solvation = -3000.375587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24686 -39.54837 -36.64331 -34.68781 -33.61452 -31.42580 -31.18918 -29.75488 -27.39708 -25.97087 -23.59702 -22.80151 -21.73071 -20.29568 -19.78495 -17.63485 -17.02632 -16.64698 -16.38003 -15.69056 -15.46996 -15.03787 -14.24118 -14.17050 -13.89574 -13.67283 -13.53105 -13.13968 -12.72606 -12.60560 -12.33551 -12.25717 -11.69253 -11.54337 -11.35822 -11.11105 -11.02552 -10.93772 -10.36830 -10.31189 -10.15081 -9.92873 -9.69881 -9.25883 -9.18840 -8.99286 -8.55806 -6.07347 -4.07170 1.05435 1.13217 2.70854 2.99470 3.34344 3.41280 3.50565 3.53372 4.46095 4.46219 4.47249 4.73313 4.79040 4.85326 4.87016 5.13673 5.21755 5.25913 5.27464 5.33191 5.47331 5.55819 5.68419 5.74526 5.78622 5.88242 6.00090 6.02902 6.05424 6.21414 6.24759 6.37513 6.49763 6.72424 6.81295 7.24138 7.31269 7.70867 8.22484 8.47058 8.95087 9.54533 11.05234 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003241 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.752600 B = 8637.642421 C = 8977.912906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 H 0.090 0.910 4 C 0.073 3.927 5 O -0.362 6.362 6 C 0.457 3.543 7 O -0.512 6.512 8 C -0.095 4.095 9 C -0.002 4.002 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.262 1.262 18 C -0.076 4.076 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -1.942 -26.595 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 H 0.109 0.891 4 C -0.002 4.002 5 O -0.280 6.280 6 C 0.301 3.699 7 O -0.399 6.399 8 C -0.133 4.133 9 C -0.040 4.040 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.076 4.076 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.131 4.131 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.380 -2.275 -26.410 26.510 hybrid contribution 0.664 -0.979 0.068 1.185 sum 0.285 -3.254 -26.342 26.544 Atomic orbital electron populations 1.21833 0.93237 1.02342 1.02600 1.20121 0.97162 0.99818 0.89829 0.89131 1.22974 1.00149 0.94824 0.82212 1.86523 1.73125 1.53145 1.15170 1.24732 0.75719 0.84212 0.85222 1.90620 1.37494 1.24262 1.87548 1.21535 1.03726 1.00517 0.87501 1.19482 0.96709 0.96078 0.91717 1.21032 1.36513 1.10079 0.88836 0.90640 1.24955 0.95446 0.97163 0.95556 1.69903 1.46698 1.39570 0.97726 0.86803 0.80737 0.84333 0.77721 1.20165 1.21315 1.18603 1.19712 0.97785 0.94300 0.95797 1.21087 1.00054 0.94249 0.97672 1.21160 0.98033 0.99961 0.94493 1.21170 0.98645 0.94911 0.99477 1.21148 1.00060 0.94990 0.97585 1.21102 0.97500 1.00078 0.94378 0.92525 0.91051 0.92355 0.91350 0.91407 0.88343 0.88310 0.95626 0.96072 0.92600 0.85927 0.85999 0.86161 0.86014 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.91 37.16 0.33 -1.03 16 2 C -0.05 -0.52 2.81 -91.77 -0.26 -0.78 16 3 H 0.09 0.88 7.88 -51.93 -0.41 0.48 16 4 C 0.07 0.96 4.58 37.16 0.17 1.13 16 5 O -0.36 -5.67 9.76 -39.26 -0.38 -6.06 16 6 C 0.46 8.59 7.96 36.00 0.29 8.88 16 7 O -0.51 -11.10 15.73 -18.75 -0.29 -11.40 16 8 C -0.10 -1.86 5.75 -27.89 -0.16 -2.02 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.53 -14.89 9.66 -34.44 -0.33 -15.23 16 11 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 14 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 18 C -0.08 -0.75 4.78 -104.63 -0.50 -1.25 16 19 C -0.11 -1.09 8.76 -39.58 -0.35 -1.43 16 20 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 21 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.11 -1.02 9.67 -39.59 -0.38 -1.40 16 24 H 0.06 0.52 7.40 -51.93 -0.38 0.14 16 25 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.90 7.55 -51.93 -0.39 0.51 16 28 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 32 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.12 1.10 7.17 -52.48 -0.38 0.72 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.92 7.95 -52.49 -0.42 0.51 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -32.40 322.97 -7.98 -40.38 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.69 Total: -2.98 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.58 Total: -15.52 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.68 Total: -17.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.40 -7.98 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.424 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds