Wall clock time and date at job start Mon Mar 30 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 O 1.45196 * 109.47502 * 294.99958 * 4 2 1 6 6 C 1.34232 * 117.00515 * 179.97438 * 5 4 2 7 7 O 1.20826 * 119.99755 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47041 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47248 * 180.02562 * 9 8 6 11 11 H 1.07990 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00048 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00083 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00215 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47164 * 89.99578 * 14 12 10 16 16 H 1.48493 * 109.47550 * 210.00077 * 14 12 10 17 17 H 1.48507 * 109.47188 * 330.00071 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 C 1.38236 * 119.99963 * 299.73020 * 18 2 1 20 20 C 1.38236 * 120.00036 * 179.81111 * 19 18 2 21 21 C 1.38226 * 119.99834 * 0.39071 * 20 19 18 22 22 C 1.38237 * 120.00085 * 359.86461 * 21 20 19 23 23 C 1.38229 * 120.00216 * 120.00264 * 18 2 1 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 1.09003 * 109.47375 * 299.99989 * 8 6 5 30 30 H 1.09002 * 109.47219 * 60.00272 * 8 6 5 31 31 H 1.09003 * 109.47506 * 300.00206 * 9 8 6 32 32 H 1.09001 * 109.47595 * 60.00199 * 9 8 6 33 33 H 0.97005 * 120.00051 * 179.97438 * 13 12 10 34 34 H 1.08010 * 119.99941 * 359.97438 * 19 18 2 35 35 H 1.08001 * 119.99466 * 180.23187 * 20 19 18 36 36 H 1.08005 * 120.00406 * 179.83264 * 21 20 19 37 37 H 1.07998 * 120.00065 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00084 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6558 0.0286 2.4318 6 6 2.0288 -0.4732 3.6196 7 8 2.6559 -1.5048 3.6695 8 6 1.6654 0.2499 4.8908 9 6 2.2066 -0.5275 6.0922 10 6 1.8427 0.1953 7.3636 11 1 1.2811 1.1166 7.3191 12 6 2.2257 -0.3204 8.5836 13 7 1.9085 0.3106 9.6930 14 14 3.1964 -1.9145 8.6607 15 1 4.6495 -1.6121 8.6119 16 1 2.8809 -2.6256 9.9255 17 1 2.8305 -2.7732 7.5056 18 6 2.0324 -0.7104 -1.2304 19 6 1.7031 -2.0355 -1.4464 20 6 2.1607 -2.6860 -2.5770 21 6 2.9543 -2.0139 -3.4875 22 6 3.2880 -0.6903 -3.2690 23 6 2.8272 -0.0387 -2.1403 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.1018 1.2486 4.8782 30 1 0.5809 0.3282 4.9669 31 1 1.7706 -1.5265 6.1051 32 1 3.2912 -0.6055 6.0160 33 1 2.1777 -0.0524 10.5513 34 1 1.0861 -2.5618 -0.7330 35 1 1.9003 -3.7202 -2.7475 36 1 3.3141 -2.5228 -4.3696 37 1 3.9083 -0.1652 -3.9802 38 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:26 Heat of formation + Delta-G solvation = -102.520215 kcal Electronic energy + Delta-G solvation = -18617.424018 eV Core-core repulsion = 15616.323596 eV Total energy + Delta-G solvation = -3001.100422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57355 -40.35136 -37.93569 -35.63629 -35.61784 -33.43034 -31.82117 -30.49829 -28.85481 -27.41425 -24.48858 -23.70750 -23.18968 -21.42611 -21.07096 -19.37376 -18.42422 -17.77817 -17.60050 -17.06839 -16.29706 -16.22443 -15.91284 -15.41902 -14.89012 -14.73760 -14.60268 -14.38806 -14.18342 -13.70052 -13.61916 -13.32390 -13.00390 -12.93357 -12.56598 -12.26660 -12.18721 -12.02566 -11.91925 -11.78591 -11.75382 -11.48554 -11.45150 -11.34047 -10.79201 -9.83357 -9.67296 -8.32155 -6.36247 0.38245 0.48693 1.20709 1.33987 1.36129 1.49787 1.69462 2.34204 2.85835 3.03251 3.62239 3.66222 3.87538 4.00571 4.10588 4.14828 4.25592 4.28492 4.36564 4.39377 4.51319 4.53343 4.61843 4.71951 4.85440 4.93420 5.04903 5.11832 5.16331 5.25088 5.29801 5.36072 5.39953 5.56984 5.58895 5.61836 5.68343 6.10048 6.21189 6.68792 6.79820 7.28947 8.83379 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003241 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.752600 B = 8637.642421 C = 8977.912906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 H 0.097 0.903 4 C 0.070 3.930 5 O -0.352 6.352 6 C 0.468 3.532 7 O -0.544 6.544 8 C -0.091 4.091 9 C 0.001 3.999 10 C -0.531 4.531 11 H 0.052 0.948 12 C 0.014 3.986 13 N -0.942 5.942 14 Si 0.939 3.061 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.259 1.259 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -2.440 -28.693 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 H 0.115 0.885 4 C -0.004 4.004 5 O -0.269 6.269 6 C 0.313 3.687 7 O -0.434 6.434 8 C -0.128 4.128 9 C -0.036 4.036 10 C -0.569 4.569 11 H 0.070 0.930 12 C -0.183 4.183 13 N -0.582 5.582 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.183 1.183 18 C -0.090 4.090 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.084 -2.756 -28.534 28.667 hybrid contribution 0.486 -0.772 0.618 1.102 sum 0.570 -3.527 -27.916 28.144 Atomic orbital electron populations 1.21821 0.92675 1.02510 1.02820 1.20069 0.97585 0.99803 0.88554 0.88451 1.23236 0.99978 0.95126 0.82053 1.86494 1.72424 1.52968 1.14969 1.24372 0.74998 0.83395 0.85919 1.90613 1.39069 1.25598 1.88108 1.21339 1.04642 1.00479 0.86374 1.19327 0.96358 0.95780 0.92166 1.21338 1.35566 1.09443 0.90549 0.92954 1.25799 0.96665 1.00545 0.95341 1.70018 1.48317 1.41455 0.98439 0.85826 0.79546 0.80357 0.77984 1.19294 1.20394 1.18294 1.19717 0.98784 0.94597 0.95897 1.21229 1.00598 0.94455 0.98329 1.21430 0.98022 1.00862 0.94283 1.21511 0.98021 0.95070 0.99979 1.21471 0.99942 0.95243 0.97654 1.21340 0.97288 1.00846 0.94562 0.92433 0.91832 0.91073 0.91495 0.92019 0.86734 0.86701 0.96509 0.96665 0.92282 0.85964 0.84470 0.83994 0.83888 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.91 71.98 0.64 -1.85 16 2 C -0.04 -0.80 2.81 -11.54 -0.03 -0.84 16 3 H 0.10 1.74 7.88 -2.39 -0.02 1.72 16 4 C 0.07 1.78 4.58 71.98 0.33 2.10 16 5 O -0.35 -10.56 9.76 -51.43 -0.50 -11.06 16 6 C 0.47 17.06 7.96 71.23 0.57 17.63 16 7 O -0.54 -23.18 15.73 21.96 0.35 -22.84 16 8 C -0.09 -3.46 5.75 29.84 0.17 -3.28 16 9 C 0.00 0.06 3.33 29.85 0.10 0.16 16 10 C -0.53 -30.17 9.66 25.60 0.25 -29.92 16 11 H 0.05 3.14 7.99 -2.92 -0.02 3.11 16 12 C 0.01 0.85 5.47 84.66 0.46 1.31 16 13 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 14 Si 0.94 45.78 27.47 68.60 1.88 47.66 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 18 C -0.09 -1.66 4.78 -19.87 -0.09 -1.75 16 19 C -0.13 -2.33 8.76 22.27 0.20 -2.14 16 20 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 21 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 22 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.12 -1.99 9.67 22.27 0.22 -1.77 16 24 H 0.06 0.99 7.40 -2.39 -0.02 0.98 16 25 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.73 7.55 -2.39 -0.02 1.71 16 28 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.02 0.83 7.16 -2.39 -0.02 0.82 16 32 H 0.01 0.74 7.53 -2.39 -0.02 0.73 16 33 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 34 H 0.12 2.12 7.17 -2.91 -0.02 2.10 16 35 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.14 1.76 7.95 -2.91 -0.02 1.74 16 Total: -1.00 -68.51 322.97 6.47 -62.04 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.97 Total: 7.58 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 3.47 Total: -25.25 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.30 Total: -58.14 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.16 Total: -33.89 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -68.51 6.47 -62.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.478 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds