Wall clock time and date at job start Mon Mar 30 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47197 * 2 1 4 4 C 1.52998 * 109.46971 * 120.00451 * 2 1 3 5 5 C 1.50706 * 109.46692 * 184.99798 * 4 2 1 6 6 C 1.38237 * 119.99761 * 90.00485 * 5 4 2 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.94731 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00191 * 269.97586 * 5 4 2 11 11 O 1.45207 * 109.46760 * 240.00506 * 2 1 3 12 12 C 1.34227 * 117.00074 * 90.00104 * 11 2 1 13 13 O 1.20830 * 119.99803 * 359.97438 * 12 11 2 14 14 C 1.50696 * 119.99937 * 179.97438 * 12 11 2 15 15 C 1.53001 * 109.47281 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00036 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99577 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00458 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.46829 * 60.00444 * 20 18 16 22 22 H 1.48491 * 109.47553 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47208 * 300.00821 * 20 18 16 24 24 H 1.09000 * 109.47254 * 299.99354 * 1 2 3 25 25 H 1.09002 * 109.47351 * 59.99782 * 1 2 3 26 26 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47294 * 65.00039 * 4 2 1 28 28 H 1.09000 * 109.46981 * 304.99564 * 4 2 1 29 29 H 1.08005 * 120.00088 * 359.96779 * 6 5 4 30 30 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 119.99990 * 0.02562 * 10 5 4 34 34 H 1.08998 * 109.47742 * 300.00430 * 14 12 11 35 35 H 1.09004 * 109.47075 * 60.00484 * 14 12 11 36 36 H 1.08998 * 109.47288 * 300.00958 * 15 14 12 37 37 H 1.09004 * 109.46466 * 60.00362 * 15 14 12 38 38 H 0.97001 * 120.00003 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1324 0.4491 1.9683 7 6 5.5101 0.5464 2.0269 8 6 6.2973 -0.4210 1.4308 9 6 5.7068 -1.4826 0.7709 10 6 4.3291 -1.5819 0.7156 11 8 2.0140 -0.6844 -1.1857 12 6 2.2171 0.0641 -2.2812 13 8 1.9973 1.2519 -2.2505 14 6 2.7192 -0.5768 -3.5493 15 6 2.8631 0.4893 -4.6372 16 6 3.3658 -0.1516 -5.9051 17 1 3.5625 -1.2132 -5.9324 18 6 3.5735 0.6171 -7.0307 19 7 3.3334 1.9098 -6.9976 20 14 4.1959 -0.1773 -8.6026 21 1 3.2306 -1.2137 -9.0492 22 1 4.3357 0.8574 -9.6585 23 1 5.5167 -0.8073 -8.3495 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7516 -1.7716 1.2055 28 1 1.6054 -0.2618 2.1369 29 1 3.5174 1.2046 2.4346 30 1 5.9714 1.3780 2.5387 31 1 7.3736 -0.3452 1.4770 32 1 6.3218 -2.2360 0.3015 33 1 3.8678 -2.4133 0.2034 34 1 3.6882 -1.0399 -3.3634 35 1 2.0102 -1.3370 -3.8775 36 1 1.8938 0.9520 -4.8230 37 1 3.5718 1.2497 -4.3092 38 1 3.4792 2.4506 -7.7896 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813064626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:28 Heat of formation + Delta-G solvation = -88.357747 kcal Electronic energy + Delta-G solvation = -19177.100080 eV Core-core repulsion = 16176.613789 eV Total energy + Delta-G solvation = -3000.486291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13968 -39.11507 -36.48952 -33.77266 -33.53268 -31.21938 -30.87892 -30.65882 -26.61011 -26.04021 -22.97244 -22.57292 -21.65064 -20.65124 -19.70152 -17.40484 -16.86853 -16.30784 -15.76795 -15.51492 -15.13178 -14.93445 -14.45924 -13.86499 -13.68545 -13.41940 -13.26244 -12.83493 -12.52039 -12.27732 -12.15534 -12.09054 -11.89627 -11.23254 -11.08479 -11.01807 -10.92648 -10.81041 -10.64521 -10.25603 -10.01544 -9.84625 -9.50416 -9.16878 -8.90181 -8.69097 -8.35706 -5.99648 -4.04516 1.34056 1.42054 2.90963 3.17839 3.33780 3.38439 3.40742 3.77389 4.45547 4.60225 4.80943 4.89595 5.00581 5.09448 5.17729 5.22243 5.26735 5.35596 5.41395 5.50238 5.64317 5.66168 5.85822 5.91545 6.02627 6.06375 6.13282 6.16582 6.24606 6.45624 6.52469 6.60876 6.73446 7.00307 7.04416 7.68280 7.76252 8.00214 8.29977 8.48235 9.02427 9.59310 11.11391 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004509 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.042963 B = 6208.621965 C = 6986.395399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 H 0.083 0.917 4 C -0.076 4.076 5 C -0.085 4.085 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.119 4.119 10 C -0.102 4.102 11 O -0.358 6.358 12 C 0.457 3.543 13 O -0.507 6.507 14 C -0.103 4.103 15 C 0.034 3.966 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 -6.558 19.418 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.031 3.969 3 H 0.101 0.899 4 C -0.113 4.113 5 C -0.085 4.085 6 C -0.137 4.137 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.120 4.120 11 O -0.276 6.276 12 C 0.300 3.700 13 O -0.393 6.393 14 C -0.141 4.141 15 C -0.003 4.003 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.210 -6.016 19.346 20.261 hybrid contribution 0.341 -0.140 -0.885 0.959 sum 0.131 -6.156 18.460 19.460 Atomic orbital electron populations 1.22191 0.94457 1.02865 1.03058 1.22559 0.93954 0.97414 0.82960 0.89890 1.20757 0.91687 1.02466 0.96413 1.19811 0.95304 0.95278 0.98101 1.21042 0.94994 0.97717 0.99982 1.21100 0.93813 0.98918 1.00176 1.21149 0.99761 0.94921 0.98414 1.21185 0.94986 0.98457 0.99114 1.21107 0.93557 0.99026 0.98277 1.86609 1.77495 1.43000 1.20499 1.24700 0.73742 0.86371 0.85150 1.90614 1.47784 1.17031 1.83911 1.21737 1.01604 1.01911 0.88838 1.18996 0.98464 0.92477 0.90368 1.21121 1.45087 0.94665 0.95773 0.92406 1.25015 0.95490 0.94806 0.98962 1.69988 1.48301 1.05034 1.29507 0.86610 0.79398 0.78930 0.82763 1.20162 1.21251 1.20172 0.91117 0.91615 0.91627 0.89793 0.89264 0.86290 0.86263 0.86282 0.86024 0.85696 0.89148 0.89121 0.95663 0.95676 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.55 37.16 0.35 -1.62 16 2 C 0.09 1.18 2.55 -26.73 -0.07 1.12 16 3 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 4 C -0.08 -0.81 5.06 -27.88 -0.14 -0.95 16 5 C -0.08 -1.04 4.97 -104.62 -0.52 -1.56 16 6 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 7 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 8 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 9 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 10 C -0.10 -1.28 9.40 -39.58 -0.37 -1.65 16 11 O -0.36 -5.96 9.38 -39.25 -0.37 -6.33 16 12 C 0.46 9.26 7.93 36.00 0.29 9.55 16 13 O -0.51 -11.84 15.20 -18.75 -0.29 -12.12 16 14 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 15 C 0.03 0.92 4.26 -27.88 -0.12 0.80 16 16 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.94 329.19 -8.53 -41.47 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.82 Total: -0.48 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.73 Total: -17.51 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.65 Total: -18.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.94 -8.53 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813064626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.891 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds