Wall clock time and date at job start Mon Mar 30 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47197 * 2 1 4 4 C 1.52998 * 109.46971 * 120.00451 * 2 1 3 5 5 C 1.50706 * 109.46692 * 184.99798 * 4 2 1 6 6 C 1.38237 * 119.99761 * 90.00485 * 5 4 2 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.94731 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00191 * 269.97586 * 5 4 2 11 11 O 1.45207 * 109.46760 * 240.00506 * 2 1 3 12 12 C 1.34227 * 117.00074 * 90.00104 * 11 2 1 13 13 O 1.20830 * 119.99803 * 359.97438 * 12 11 2 14 14 C 1.50696 * 119.99937 * 179.97438 * 12 11 2 15 15 C 1.53001 * 109.47281 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00036 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99577 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00458 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.46829 * 60.00444 * 20 18 16 22 22 H 1.48491 * 109.47553 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47208 * 300.00821 * 20 18 16 24 24 H 1.09000 * 109.47254 * 299.99354 * 1 2 3 25 25 H 1.09002 * 109.47351 * 59.99782 * 1 2 3 26 26 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47294 * 65.00039 * 4 2 1 28 28 H 1.09000 * 109.46981 * 304.99564 * 4 2 1 29 29 H 1.08005 * 120.00088 * 359.96779 * 6 5 4 30 30 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 119.99990 * 0.02562 * 10 5 4 34 34 H 1.08998 * 109.47742 * 300.00430 * 14 12 11 35 35 H 1.09004 * 109.47075 * 60.00484 * 14 12 11 36 36 H 1.08998 * 109.47288 * 300.00958 * 15 14 12 37 37 H 1.09004 * 109.46466 * 60.00362 * 15 14 12 38 38 H 0.97001 * 120.00003 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1324 0.4491 1.9683 7 6 5.5101 0.5464 2.0269 8 6 6.2973 -0.4210 1.4308 9 6 5.7068 -1.4826 0.7709 10 6 4.3291 -1.5819 0.7156 11 8 2.0140 -0.6844 -1.1857 12 6 2.2171 0.0641 -2.2812 13 8 1.9973 1.2519 -2.2505 14 6 2.7192 -0.5768 -3.5493 15 6 2.8631 0.4893 -4.6372 16 6 3.3658 -0.1516 -5.9051 17 1 3.5625 -1.2132 -5.9324 18 6 3.5735 0.6171 -7.0307 19 7 3.3334 1.9098 -6.9976 20 14 4.1959 -0.1773 -8.6026 21 1 3.2306 -1.2137 -9.0492 22 1 4.3357 0.8574 -9.6585 23 1 5.5167 -0.8073 -8.3495 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7516 -1.7716 1.2055 28 1 1.6054 -0.2618 2.1369 29 1 3.5174 1.2046 2.4346 30 1 5.9714 1.3780 2.5387 31 1 7.3736 -0.3452 1.4770 32 1 6.3218 -2.2360 0.3015 33 1 3.8678 -2.4133 0.2034 34 1 3.6882 -1.0399 -3.3634 35 1 2.0102 -1.3370 -3.8775 36 1 1.8938 0.9520 -4.8230 37 1 3.5718 1.2497 -4.3092 38 1 3.4792 2.4506 -7.7896 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813064626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:27 Heat of formation + Delta-G solvation = -105.568574 kcal Electronic energy + Delta-G solvation = -19177.846397 eV Core-core repulsion = 16176.613789 eV Total energy + Delta-G solvation = -3001.232609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58777 -40.08367 -37.92126 -35.64973 -34.85837 -33.11261 -31.77194 -31.72231 -28.08999 -27.46392 -24.67237 -23.45220 -22.92500 -21.78609 -21.27170 -19.13649 -18.18407 -17.75320 -17.32090 -16.87629 -16.49545 -16.11460 -15.92112 -15.20577 -14.85352 -14.49017 -14.32484 -14.23120 -14.22553 -13.49550 -13.40621 -13.24252 -13.00191 -12.93693 -12.79877 -12.53657 -12.11170 -12.02161 -11.95096 -11.79903 -11.72273 -11.48770 -11.37537 -11.22393 -10.57570 -9.79041 -9.58936 -8.20237 -6.34504 0.44989 0.53070 1.28609 1.42734 1.47234 1.54881 1.78774 2.43205 2.87656 3.13344 3.68631 3.86813 3.91552 3.99816 4.17046 4.18475 4.24685 4.33774 4.40719 4.43759 4.53547 4.65889 4.73986 4.78986 4.82277 4.91995 5.00012 5.14032 5.19861 5.21653 5.43614 5.51228 5.53573 5.58833 5.64994 5.74205 5.79529 6.12605 6.15781 6.80772 6.89712 7.35858 8.92374 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004509 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.042963 B = 6208.621965 C = 6986.395399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 H 0.060 0.940 4 C -0.067 4.067 5 C -0.102 4.102 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.135 4.135 9 C -0.134 4.134 10 C -0.120 4.120 11 O -0.347 6.347 12 C 0.465 3.535 13 O -0.547 6.547 14 C -0.095 4.095 15 C 0.041 3.959 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.263 1.263 24 H 0.101 0.899 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.115 0.885 36 H -0.011 1.011 37 H -0.014 1.014 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -8.511 20.106 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 H 0.078 0.922 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.153 4.153 9 C -0.152 4.152 10 C -0.138 4.138 11 O -0.264 6.264 12 C 0.310 3.690 13 O -0.437 6.437 14 C -0.132 4.132 15 C 0.004 3.996 16 C -0.583 4.583 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.119 0.881 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.007 0.993 37 H 0.004 0.996 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.005 -8.010 20.066 21.606 hybrid contribution 0.274 0.498 -0.985 1.137 sum 0.269 -7.512 19.081 20.508 Atomic orbital electron populations 1.22195 0.92698 1.04026 1.03226 1.22939 0.95423 0.96558 0.82653 0.92176 1.20794 0.90793 1.03202 0.95543 1.20075 0.96242 0.95491 0.98361 1.21363 0.95582 0.98024 1.00051 1.21450 0.94005 0.99519 1.00148 1.21476 1.00949 0.94779 0.98126 1.21472 0.95196 0.99125 0.99373 1.21326 0.94105 0.99555 0.98830 1.86565 1.76996 1.42371 1.20488 1.24404 0.73004 0.85701 0.85913 1.90606 1.49662 1.18710 1.84701 1.21488 1.03542 1.00334 0.87856 1.18762 0.95289 0.93117 0.92466 1.21605 1.44741 0.95674 0.96275 0.90493 1.26105 0.95506 0.95247 1.03233 1.70161 1.49689 1.07006 1.30753 0.85360 0.79361 0.77988 0.77475 1.18627 1.21231 1.18742 0.88082 0.94347 0.89916 0.88376 0.86263 0.84675 0.84367 0.84452 0.84676 0.85308 0.87152 0.86717 0.99274 0.99564 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.55 71.98 0.69 -2.89 16 2 C 0.08 2.07 2.55 30.59 0.08 2.15 16 3 H 0.06 1.88 7.16 -2.39 -0.02 1.87 16 4 C -0.07 -1.26 5.06 29.85 0.15 -1.11 16 5 C -0.10 -2.36 4.97 -19.86 -0.10 -2.46 16 6 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 7 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 8 C -0.14 -2.94 10.05 22.27 0.22 -2.72 16 9 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 10 C -0.12 -2.89 9.40 22.27 0.21 -2.68 16 11 O -0.35 -11.27 9.38 -51.39 -0.48 -11.76 16 12 C 0.46 19.05 7.93 71.23 0.56 19.61 16 13 O -0.55 -26.57 15.20 21.95 0.33 -26.24 16 14 C -0.09 -3.98 5.75 29.85 0.17 -3.81 16 15 C 0.04 2.28 4.26 29.85 0.13 2.41 16 16 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.94 -58.96 13.29 21.45 0.28 -58.68 16 20 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.12 1.57 8.09 -2.39 -0.02 1.55 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 35 H 0.11 4.26 8.14 -2.38 -0.02 4.24 16 36 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 37 H -0.01 -0.88 8.10 -2.38 -0.02 -0.90 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -73.48 329.19 6.66 -66.82 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.02 Total: 13.92 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.47 Total: -30.14 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.15 Total: -37.99 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.48 6.66 -66.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813064626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.744 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds