Wall clock time and date at job start Mon Mar 30 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99974 * 2 1 4 4 N 1.46904 * 109.47098 * 124.15419 * 3 2 1 5 5 C 1.46899 * 110.99946 * 61.64456 * 4 3 2 6 6 C 1.50694 * 109.47395 * 66.04354 * 5 4 3 7 7 H 1.08006 * 120.00384 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00235 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99771 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47140 * 89.99608 * 10 8 6 12 12 H 1.48494 * 109.47064 * 209.99950 * 10 8 6 13 13 H 1.48506 * 109.46784 * 329.99752 * 10 8 6 14 14 C 1.46897 * 111.00114 * 297.68395 * 4 3 2 15 15 C 1.50696 * 109.47400 * 288.23834 * 14 4 3 16 16 C 1.34333 * 126.16563 * 94.98168 * 15 14 4 17 17 O 1.34750 * 107.11216 * 180.02562 * 16 15 14 18 18 C 1.33975 * 107.75415 * 359.97438 * 17 16 15 19 19 C 1.50698 * 125.61466 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.50502 * 8.72329 * 19 18 17 21 21 C 1.53000 * 117.50088 * 300.06140 * 19 18 17 22 22 N 1.30248 * 108.76189 * 359.73201 * 18 17 16 23 23 H 1.08003 * 119.99664 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00198 * 179.97438 * 1 2 3 25 25 H 1.07994 * 119.99705 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47700 * 4.15506 * 3 2 1 27 27 H 1.09004 * 109.47494 * 244.15632 * 3 2 1 28 28 H 1.08995 * 109.47161 * 186.04723 * 5 4 3 29 29 H 1.09005 * 109.46525 * 306.04578 * 5 4 3 30 30 H 0.97001 * 119.99749 * 180.02562 * 9 8 6 31 31 H 1.09009 * 109.46336 * 48.23794 * 14 4 3 32 32 H 1.09001 * 109.47075 * 168.23221 * 14 4 3 33 33 H 1.07997 * 126.44670 * 359.97241 * 16 15 14 34 34 H 1.09007 * 115.55102 * 154.39808 * 19 18 17 35 35 H 1.08997 * 117.49667 * 359.97438 * 20 19 18 36 36 H 1.09002 * 117.50275 * 145.01892 * 20 19 18 37 37 H 1.09002 * 117.49869 * 214.98624 * 21 19 18 38 38 H 1.09005 * 117.49892 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1462 5 6 3.9743 0.2609 1.0590 6 6 4.8724 0.4988 -0.1274 7 1 4.7209 1.3651 -0.7544 8 6 5.8870 -0.3900 -0.4133 9 7 6.0713 -1.4452 0.3498 10 14 7.0008 -0.0947 -1.8835 11 1 8.1692 0.7201 -1.4637 12 1 7.4722 -1.3979 -2.4170 13 1 6.2464 0.6285 -2.9387 14 6 2.2435 1.2756 2.4144 15 6 1.5278 2.5814 2.6463 16 6 0.2518 2.8537 2.3264 17 8 0.0120 4.1257 2.7011 18 6 1.1372 4.6112 3.2424 19 6 1.3156 6.0011 3.7968 20 6 0.0667 6.8749 3.9286 21 6 1.1004 7.1760 2.8406 22 7 2.0495 3.6820 3.2163 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3576 2.1323 0.0745 27 1 2.6332 1.3958 -0.9249 28 1 4.5726 0.2430 1.9698 29 1 3.4626 -0.6944 0.9415 30 1 6.7853 -2.0703 0.1489 31 1 1.5157 0.4652 2.3701 32 1 2.9409 1.0933 3.2320 33 1 -0.4495 2.1803 1.8564 34 1 2.0872 6.1077 4.5593 35 1 -0.8841 6.4447 3.6141 36 1 0.0166 7.5566 4.7778 37 1 1.7302 8.0556 2.9744 38 1 0.8302 6.9437 1.8105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814171414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:51 Heat of formation + Delta-G solvation = 78.262163 kcal Electronic energy + Delta-G solvation = -19397.269040 eV Core-core repulsion = 16436.300681 eV Total energy + Delta-G solvation = -2960.968358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.11722 -37.67378 -37.23343 -34.57614 -32.95215 -32.11995 -30.31418 -27.27681 -26.38816 -24.26777 -23.81899 -22.67336 -21.49724 -20.99280 -20.04169 -18.86915 -17.09474 -16.50268 -16.24716 -15.84078 -15.13599 -14.96806 -14.83777 -14.22312 -13.92704 -13.58483 -13.04740 -12.83473 -12.43753 -12.00385 -11.83419 -11.42766 -11.31690 -11.28450 -10.92913 -10.85976 -10.79293 -10.64810 -10.51519 -10.48827 -10.19411 -9.84481 -9.33291 -8.91818 -8.48794 -8.39874 -7.25014 -6.01812 -4.02607 1.60433 2.65301 2.82254 2.87572 3.33653 3.39525 3.43015 3.60775 3.97541 4.44439 4.53040 4.66952 4.83473 5.07217 5.16138 5.30849 5.34973 5.35750 5.44371 5.51004 5.63560 5.74937 5.81951 5.83930 5.95895 6.01546 6.17920 6.24430 6.37495 6.53364 6.62012 7.01430 7.05434 7.33542 7.34173 7.80044 8.01888 8.09712 8.17599 8.52832 9.04165 9.61256 11.08977 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.004730 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.511387 B = 5917.722252 C = 6565.449624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.156 4.156 3 C 0.084 3.916 4 N -0.521 5.521 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.127 3.873 15 C 0.024 3.976 16 C -0.088 4.088 17 O -0.208 6.208 18 C 0.207 3.793 19 C -0.064 4.064 20 C -0.166 4.166 21 C -0.159 4.159 22 N -0.456 5.456 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.031 0.969 29 H -0.001 1.001 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.210 0.790 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 11.631 5.204 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.176 4.176 3 C -0.044 4.044 4 N -0.243 5.243 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.002 4.002 15 C -0.097 4.097 16 C -0.158 4.158 17 O -0.095 6.095 18 C 0.000 4.000 19 C -0.083 4.083 20 C -0.204 4.204 21 C -0.197 4.197 22 N -0.185 5.185 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.227 0.773 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.802 12.004 5.450 18.376 hybrid contribution -0.428 -1.074 -1.113 1.604 sum -13.230 10.930 4.337 17.701 Atomic orbital electron populations 1.23675 0.95932 1.00706 1.05444 1.23981 0.96200 1.01739 0.95634 1.21332 0.94155 0.92229 0.96726 1.62307 1.13482 1.49941 0.98615 1.19809 0.88839 0.86559 0.98152 1.21126 1.13684 1.08464 1.11055 0.91937 1.24960 0.97509 0.95102 0.96918 1.69959 1.32302 1.12950 1.38640 0.86512 0.80961 0.77350 0.82681 1.20620 1.21361 1.19897 1.20354 0.96299 0.88352 0.95223 1.21845 0.91663 0.96441 0.99724 1.24751 0.99737 0.84005 1.07329 1.84337 1.38651 1.26030 1.60489 1.25037 0.79968 0.96671 0.98309 1.20149 1.02915 0.81964 1.03279 1.23097 0.93799 1.01858 1.01626 1.23125 1.02264 0.97928 0.96413 1.70331 1.30444 0.99675 1.18085 0.89489 0.89238 0.86653 0.92579 0.88929 0.95056 0.98291 0.92946 0.93440 0.89645 0.77336 0.83851 0.88006 0.87464 0.87281 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.13 14.32 29.01 0.42 -2.72 16 2 C -0.16 -2.74 7.49 -36.03 -0.27 -3.01 16 3 C 0.08 1.62 5.47 -4.98 -0.03 1.60 16 4 N -0.52 -11.41 4.65 -238.96 -1.11 -12.52 16 5 C 0.19 4.92 4.54 -4.98 -0.02 4.90 16 6 C -0.50 -14.12 8.49 -34.44 -0.29 -14.41 16 7 H 0.06 1.75 7.11 -52.48 -0.37 1.38 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.13 2.41 5.39 -4.98 -0.03 2.39 16 15 C 0.02 0.43 6.04 -82.81 -0.50 -0.08 16 16 C -0.09 -1.31 11.13 29.35 0.33 -0.98 16 17 O -0.21 -3.08 10.47 5.35 0.06 -3.03 16 18 C 0.21 3.15 7.83 -12.95 -0.10 3.05 16 19 C -0.06 -0.70 6.33 -91.77 -0.58 -1.28 16 20 C -0.17 -1.34 10.17 -26.70 -0.27 -1.61 16 21 C -0.16 -1.41 10.24 -26.69 -0.27 -1.68 16 22 N -0.46 -8.42 11.29 -7.36 -0.08 -8.51 16 23 H 0.09 1.09 7.22 -52.48 -0.38 0.71 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.12 2.28 6.72 -52.49 -0.35 1.92 16 26 H 0.06 0.99 6.32 -51.93 -0.33 0.66 16 27 H 0.09 1.97 6.81 -51.93 -0.35 1.61 16 28 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 29 H 0.00 -0.02 6.22 -51.93 -0.32 -0.34 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 0.83 6.81 -51.92 -0.35 0.48 16 32 H 0.09 1.70 7.81 -51.93 -0.41 1.30 16 33 H 0.21 2.48 7.44 -52.49 -0.39 2.09 16 34 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.10 0.86 7.95 -51.93 -0.41 0.45 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -31.50 320.68 -7.64 -39.14 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.33 Total: 1.53 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.72 Total: -12.36 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.46 Total: -46.85 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.06 Total: -3.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.50 -7.64 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.400 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds