Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99974 * 2 1 4 4 N 1.46904 * 109.47098 * 124.15419 * 3 2 1 5 5 C 1.46899 * 110.99946 * 61.64456 * 4 3 2 6 6 C 1.50694 * 109.47395 * 66.04354 * 5 4 3 7 7 H 1.08006 * 120.00384 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00235 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99771 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47140 * 89.99608 * 10 8 6 12 12 H 1.48494 * 109.47064 * 209.99950 * 10 8 6 13 13 H 1.48506 * 109.46784 * 329.99752 * 10 8 6 14 14 C 1.46897 * 111.00114 * 297.68395 * 4 3 2 15 15 C 1.50696 * 109.47400 * 288.23834 * 14 4 3 16 16 C 1.34333 * 126.16563 * 94.98168 * 15 14 4 17 17 O 1.34750 * 107.11216 * 180.02562 * 16 15 14 18 18 C 1.33975 * 107.75415 * 359.97438 * 17 16 15 19 19 C 1.50698 * 125.61466 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.50502 * 8.72329 * 19 18 17 21 21 C 1.53000 * 117.50088 * 300.06140 * 19 18 17 22 22 N 1.30248 * 108.76189 * 359.73201 * 18 17 16 23 23 H 1.08003 * 119.99664 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00198 * 179.97438 * 1 2 3 25 25 H 1.07994 * 119.99705 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47700 * 4.15506 * 3 2 1 27 27 H 1.09004 * 109.47494 * 244.15632 * 3 2 1 28 28 H 1.08995 * 109.47161 * 186.04723 * 5 4 3 29 29 H 1.09005 * 109.46525 * 306.04578 * 5 4 3 30 30 H 0.97001 * 119.99749 * 180.02562 * 9 8 6 31 31 H 1.09009 * 109.46336 * 48.23794 * 14 4 3 32 32 H 1.09001 * 109.47075 * 168.23221 * 14 4 3 33 33 H 1.07997 * 126.44670 * 359.97241 * 16 15 14 34 34 H 1.09007 * 115.55102 * 154.39808 * 19 18 17 35 35 H 1.08997 * 117.49667 * 359.97438 * 20 19 18 36 36 H 1.09002 * 117.50275 * 145.01892 * 20 19 18 37 37 H 1.09002 * 117.49869 * 214.98624 * 21 19 18 38 38 H 1.09005 * 117.49892 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1462 5 6 3.9743 0.2609 1.0590 6 6 4.8724 0.4988 -0.1274 7 1 4.7209 1.3651 -0.7544 8 6 5.8870 -0.3900 -0.4133 9 7 6.0713 -1.4452 0.3498 10 14 7.0008 -0.0947 -1.8835 11 1 8.1692 0.7201 -1.4637 12 1 7.4722 -1.3979 -2.4170 13 1 6.2464 0.6285 -2.9387 14 6 2.2435 1.2756 2.4144 15 6 1.5278 2.5814 2.6463 16 6 0.2518 2.8537 2.3264 17 8 0.0120 4.1257 2.7011 18 6 1.1372 4.6112 3.2424 19 6 1.3156 6.0011 3.7968 20 6 0.0667 6.8749 3.9286 21 6 1.1004 7.1760 2.8406 22 7 2.0495 3.6820 3.2163 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3576 2.1323 0.0745 27 1 2.6332 1.3958 -0.9249 28 1 4.5726 0.2430 1.9698 29 1 3.4626 -0.6944 0.9415 30 1 6.7853 -2.0703 0.1489 31 1 1.5157 0.4652 2.3701 32 1 2.9409 1.0933 3.2320 33 1 -0.4495 2.1803 1.8564 34 1 2.0872 6.1077 4.5593 35 1 -0.8841 6.4447 3.6141 36 1 0.0166 7.5566 4.7778 37 1 1.7302 8.0556 2.9744 38 1 0.8302 6.9437 1.8105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814171414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = 55.842612 kcal Electronic energy + Delta-G solvation = -19398.241224 eV Core-core repulsion = 16436.300681 eV Total energy + Delta-G solvation = -2961.940543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.32120 -39.21988 -38.05629 -35.87374 -34.91220 -33.68743 -31.71626 -29.12014 -27.88818 -25.77803 -25.12201 -23.36759 -23.09989 -22.28909 -21.20065 -20.33288 -18.44038 -18.14184 -17.66531 -16.95876 -16.64567 -16.60889 -15.94984 -15.85929 -15.36072 -14.98224 -14.58196 -14.12353 -13.92597 -13.30077 -13.24998 -12.99645 -12.66446 -12.57141 -12.43687 -12.41317 -12.30778 -12.20921 -11.84205 -11.62661 -11.50492 -11.45921 -11.31682 -10.62450 -10.28144 -9.64931 -8.98408 -8.20156 -6.29435 0.45194 1.36727 1.39563 1.41333 1.51761 1.61511 1.75034 2.40202 2.77894 3.02786 3.12431 3.44182 3.75697 3.84160 3.92765 4.01029 4.08523 4.19308 4.24395 4.50634 4.58626 4.62492 4.74566 4.77642 4.87474 4.94198 5.02429 5.06407 5.10469 5.21685 5.23239 5.26418 5.32699 5.62287 5.73218 5.81339 6.06620 6.32086 6.59656 6.83492 6.85594 7.39392 8.90681 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.004730 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.511387 B = 5917.722252 C = 6565.449624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.194 4.194 3 C 0.093 3.907 4 N -0.536 5.536 5 C 0.209 3.791 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.135 3.865 15 C -0.009 4.009 16 C -0.066 4.066 17 O -0.204 6.204 18 C 0.215 3.785 19 C -0.096 4.096 20 C -0.141 4.141 21 C -0.153 4.153 22 N -0.506 5.506 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.064 0.936 28 H -0.004 1.004 29 H -0.016 1.016 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.244 0.756 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 13.447 4.552 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.213 4.213 3 C -0.035 4.035 4 N -0.259 5.259 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.189 1.189 14 C 0.007 3.993 15 C -0.128 4.128 16 C -0.137 4.137 17 O -0.091 6.091 18 C 0.008 3.992 19 C -0.114 4.114 20 C -0.178 4.178 21 C -0.191 4.191 22 N -0.236 5.236 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.014 0.986 29 H 0.001 0.999 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.260 0.740 34 H 0.168 0.832 35 H 0.118 0.882 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.095 13.826 4.799 21.025 hybrid contribution 0.158 -1.585 -0.856 1.808 sum -14.938 12.242 3.943 19.711 Atomic orbital electron populations 1.23985 0.94369 1.03006 0.99526 1.23544 0.97348 0.99358 1.01090 1.21191 0.93787 0.94143 0.94339 1.62159 1.14684 1.48156 1.00897 1.19388 0.89249 0.87271 0.95731 1.21402 1.14413 1.08368 1.11665 0.92434 1.25841 0.98956 0.94711 0.99829 1.70082 1.33054 1.13834 1.40387 0.85432 0.78791 0.77552 0.79149 1.20124 1.20517 1.18946 1.20180 0.95936 0.90249 0.92946 1.21634 0.92994 0.95978 1.02239 1.25192 0.98908 0.84105 1.05478 1.84374 1.38433 1.25891 1.60360 1.25816 0.79236 0.97451 0.96697 1.20459 1.05571 0.80533 1.04882 1.23227 0.92395 1.00274 1.01947 1.23240 1.02775 0.97213 0.95847 1.70271 1.32346 1.00896 1.20064 0.86596 0.87176 0.89843 0.90397 0.91739 0.98637 0.99875 0.92700 0.91890 0.92058 0.74025 0.83208 0.88201 0.84635 0.85058 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 14.32 67.77 0.97 -3.34 16 2 C -0.19 -6.74 7.49 25.64 0.19 -6.55 16 3 C 0.09 3.64 5.47 85.55 0.47 4.11 16 4 N -0.54 -24.50 4.65 -909.94 -4.23 -28.73 16 5 C 0.21 11.47 4.54 85.56 0.39 11.86 16 6 C -0.52 -30.33 8.49 25.60 0.22 -30.11 16 7 H 0.06 3.34 7.11 -2.91 -0.02 3.32 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 10 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.14 5.34 5.39 85.56 0.46 5.80 16 15 C -0.01 -0.32 6.04 41.26 0.25 -0.07 16 16 C -0.07 -1.83 11.13 66.93 0.74 -1.08 16 17 O -0.20 -5.59 10.47 -3.78 -0.04 -5.63 16 18 C 0.21 6.34 7.83 88.34 0.69 7.03 16 19 C -0.10 -1.93 6.33 -11.54 -0.07 -2.01 16 20 C -0.14 -1.83 10.17 30.62 0.31 -1.52 16 21 C -0.15 -2.32 10.24 30.62 0.31 -2.00 16 22 N -0.51 -18.90 11.29 -291.98 -3.30 -22.20 16 23 H 0.12 2.30 7.22 -2.91 -0.02 2.28 16 24 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.08 3.45 6.72 -2.91 -0.02 3.43 16 26 H 0.08 2.66 6.32 -2.38 -0.02 2.64 16 27 H 0.06 2.83 6.81 -2.38 -0.02 2.82 16 28 H 0.00 -0.27 7.86 -2.39 -0.02 -0.29 16 29 H -0.02 -0.93 6.22 -2.38 -0.01 -0.95 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.06 2.24 6.81 -2.38 -0.02 2.22 16 32 H 0.06 2.64 7.81 -2.39 -0.02 2.62 16 33 H 0.24 4.72 7.44 -2.91 -0.02 4.70 16 34 H 0.15 2.76 8.14 -2.38 -0.02 2.75 16 35 H 0.10 1.37 7.95 -2.39 -0.02 1.36 16 36 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -71.87 320.68 1.19 -70.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.05 Total: 12.31 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 5.40 Total: -17.15 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -7.24 Total: -107.60 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.04 Total: -5.63 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.87 1.19 -70.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.528 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds