Wall clock time and date at job start Mon Mar 30 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20761 * 119.99827 * 2 1 4 4 C 1.50702 * 120.00189 * 180.02562 * 2 1 3 5 5 C 1.50699 * 109.47025 * 180.02562 * 4 2 1 6 6 C 1.38267 * 119.94655 * 90.00033 * 5 4 2 7 7 C 1.38139 * 120.05429 * 180.02562 * 6 5 4 8 8 C 1.38735 * 119.95008 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.06002 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99948 * 185.35906 * 9 8 7 11 11 H 1.08996 * 109.47345 * 35.35406 * 10 9 8 12 12 C 1.52999 * 109.46940 * 275.34704 * 10 9 8 13 13 C 1.53000 * 109.46882 * 155.34996 * 10 9 8 14 14 C 1.50693 * 109.47378 * 295.00049 * 13 10 9 15 15 H 1.08000 * 120.00363 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00133 * 180.02562 * 14 13 10 17 17 N 1.31510 * 120.00055 * 359.72146 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46579 * 269.72154 * 18 16 14 20 20 H 1.48501 * 109.47390 * 29.71858 * 18 16 14 21 21 H 1.48495 * 109.47373 * 149.72303 * 18 16 14 22 22 C 1.38734 * 119.88369 * 0.28426 * 8 7 6 23 23 C 1.38143 * 119.94313 * 359.42080 * 22 8 7 24 24 H 1.08998 * 109.47114 * 269.99424 * 1 2 3 25 25 H 1.09000 * 109.47211 * 29.99981 * 1 2 3 26 26 H 1.09005 * 109.46697 * 149.99276 * 1 2 3 27 27 H 1.09003 * 109.47132 * 60.00156 * 4 2 1 28 28 H 1.09000 * 109.47169 * 300.00090 * 4 2 1 29 29 H 1.07995 * 119.96760 * 359.97240 * 6 5 4 30 30 H 1.08006 * 120.02865 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.46822 * 179.97438 * 12 10 9 32 32 H 1.08996 * 109.47675 * 300.00500 * 12 10 9 33 33 H 1.09009 * 109.46915 * 60.00496 * 12 10 9 34 34 H 1.09004 * 109.47170 * 174.99606 * 13 10 9 35 35 H 1.09007 * 109.46904 * 55.00019 * 13 10 9 36 36 H 0.97001 * 119.99718 * 0.27157 * 17 16 14 37 37 H 1.08005 * 120.02492 * 179.71624 * 22 8 7 38 38 H 1.08005 * 119.97144 * 180.28105 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7421 -1.0296 0.0002 6 6 4.4202 -0.9043 1.1986 7 6 5.7782 -0.6513 1.2019 8 6 6.4619 -0.5235 0.0015 9 8 7.7980 -0.2751 0.0021 10 6 8.4145 -0.0387 -1.2652 11 1 7.7225 0.5021 -1.9107 12 6 8.7772 -1.3764 -1.9133 13 6 9.6835 0.7930 -1.0678 14 6 9.3139 2.1566 -0.5437 15 1 8.2775 2.4055 -0.3693 16 6 10.2988 3.0871 -0.2879 17 7 11.5611 2.7826 -0.4960 18 14 9.8406 4.7773 0.3624 19 1 9.6175 5.7024 -0.7777 20 1 8.5979 4.6772 1.1692 21 1 10.9422 5.2960 1.2124 22 6 5.7782 -0.6443 -1.1996 23 6 4.4213 -0.9034 -1.1976 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5140 27 1 1.9972 -1.8763 -0.8909 28 1 1.9972 -1.8771 0.8891 29 1 3.8875 -1.0034 2.1328 30 1 6.3075 -0.5530 2.1383 31 1 9.2470 -1.1961 -2.8801 32 1 9.4692 -1.9172 -1.2677 33 1 7.8731 -1.9689 -2.0539 34 1 10.2010 0.8981 -2.0214 35 1 10.3374 0.2938 -0.3526 36 1 11.7990 1.9048 -0.8333 37 1 6.3073 -0.5407 -2.1355 38 1 3.8894 -1.0021 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:18 Heat of formation + Delta-G solvation = -92.442027 kcal Electronic energy + Delta-G solvation = -19129.295878 eV Core-core repulsion = 16128.632479 eV Total energy + Delta-G solvation = -3000.663399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34368 -40.37230 -38.60556 -35.89333 -33.80445 -32.93545 -31.87299 -30.92113 -29.07360 -27.44251 -25.23278 -24.25726 -22.96525 -21.66395 -20.44923 -19.24386 -19.05047 -17.10134 -16.81729 -16.66407 -16.30624 -15.95151 -15.78458 -15.60266 -15.13285 -14.89358 -14.77061 -14.34126 -14.09656 -13.56011 -13.38903 -13.23571 -13.16367 -12.97720 -12.88098 -12.62441 -12.56422 -12.35759 -12.02990 -11.91036 -11.78043 -11.43681 -10.74449 -10.60990 -10.57631 -9.94893 -8.96311 -8.74469 -6.43081 0.39348 0.46016 1.13105 1.45825 1.55279 1.74412 2.36981 2.50202 2.74274 3.11134 3.42351 3.79840 3.81733 3.88122 3.98803 4.08284 4.25050 4.34343 4.36643 4.41758 4.52691 4.66717 4.69633 4.80063 4.81387 4.84149 4.84278 4.95946 5.06940 5.12836 5.18944 5.27124 5.37184 5.46570 5.60473 5.88647 5.94714 6.10624 6.49843 6.64488 6.71815 7.34609 8.67260 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004675 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.685214 B = 5987.507246 C = 6840.830991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.350 3.650 3 O -0.510 6.510 4 C -0.122 4.122 5 C -0.127 4.127 6 C -0.071 4.071 7 C -0.179 4.179 8 C 0.109 3.891 9 O -0.326 6.326 10 C 0.100 3.900 11 H 0.059 0.941 12 C -0.166 4.166 13 C 0.012 3.988 14 C -0.609 4.609 15 H 0.036 0.964 16 C -0.034 4.034 17 N -0.934 5.934 18 Si 1.115 2.885 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.276 1.276 22 C -0.223 4.223 23 C -0.074 4.074 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.023 0.977 35 H -0.004 1.004 36 H 0.257 0.743 37 H 0.129 0.871 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.724 -12.520 -0.501 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.229 3.771 3 O -0.387 6.387 4 C -0.158 4.158 5 C -0.128 4.128 6 C -0.089 4.089 7 C -0.198 4.198 8 C 0.063 3.937 9 O -0.240 6.240 10 C 0.044 3.956 11 H 0.077 0.923 12 C -0.223 4.223 13 C -0.025 4.025 14 C -0.647 4.647 15 H 0.054 0.946 16 C -0.232 4.232 17 N -0.572 5.572 18 Si 0.937 3.063 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.242 4.242 23 C -0.092 4.092 24 H 0.129 0.871 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.169 0.831 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.014 0.986 36 H 0.067 0.933 37 H 0.146 0.854 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.638 -10.532 0.120 24.968 hybrid contribution 0.158 -1.332 -0.668 1.498 sum -22.479 -11.864 -0.548 25.424 Atomic orbital electron populations 1.22310 0.91233 1.05885 1.05964 1.25361 0.93501 0.89799 0.68471 1.90497 1.73349 1.37098 1.37724 1.21261 0.88797 0.97519 1.08245 1.19751 0.96628 1.03828 0.92550 1.21064 0.92048 0.96635 0.99150 1.20643 0.95531 1.07701 0.95948 1.19573 0.83368 0.95212 0.95501 1.86157 1.19263 1.84488 1.34058 1.22400 0.94470 0.96145 0.82571 0.92297 1.22308 1.02593 0.96014 1.01362 1.19280 0.92708 0.94506 0.95973 1.22296 0.94794 0.99938 1.47704 0.94553 1.27307 0.92915 1.08011 0.94922 1.70889 1.18345 1.23716 1.44226 0.82952 0.75418 0.70963 0.76989 1.19204 1.20675 1.20074 1.21438 0.96940 1.08951 0.96872 1.21086 0.92579 0.96520 0.99005 0.87090 0.90680 0.86444 0.84521 0.84422 0.83077 0.85992 0.89896 0.92304 0.90806 0.95903 0.98551 0.93321 0.85361 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 10.25 71.23 0.73 -0.84 16 2 C 0.35 6.00 7.26 29.10 0.21 6.21 16 3 O -0.51 -15.34 16.77 -1.45 -0.02 -15.37 16 4 C -0.12 -1.56 5.75 29.10 0.17 -1.39 16 5 C -0.13 -3.07 4.38 -19.85 -0.09 -3.15 16 6 C -0.07 -1.94 9.69 22.25 0.22 -1.72 16 7 C -0.18 -6.36 9.99 22.37 0.22 -6.14 16 8 C 0.11 4.39 6.60 22.51 0.15 4.54 16 9 O -0.33 -15.45 9.55 -92.46 -0.88 -16.33 16 10 C 0.10 4.51 2.17 30.59 0.07 4.58 16 11 H 0.06 2.65 6.31 -2.39 -0.02 2.64 16 12 C -0.17 -5.80 9.17 71.98 0.66 -5.14 16 13 C 0.01 0.67 3.99 29.85 0.12 0.79 16 14 C -0.61 -37.45 8.88 25.60 0.23 -37.22 16 15 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 16 C -0.03 -2.08 5.46 84.66 0.46 -1.61 16 17 N -0.93 -59.79 13.65 21.45 0.29 -59.50 16 18 Si 1.12 54.03 29.90 68.60 2.05 56.08 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 C -0.22 -7.68 8.23 22.37 0.18 -7.50 16 23 C -0.07 -2.01 9.69 22.26 0.22 -1.80 16 24 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.12 0.17 8.12 -2.38 -0.02 0.15 16 27 H 0.14 0.91 8.09 -2.39 -0.02 0.89 16 28 H 0.14 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.24 6.90 -2.38 -0.02 2.22 16 34 H 0.02 1.26 8.01 -2.38 -0.02 1.24 16 35 H 0.00 -0.22 8.01 -2.38 -0.02 -0.24 16 36 H 0.26 16.50 7.22 -92.71 -0.67 15.83 16 37 H 0.13 4.27 5.43 -2.91 -0.02 4.25 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -81.30 323.38 6.12 -75.18 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.14 Total: 10.34 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.54 Total: -50.40 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.29 Total: -59.50 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.91 Total: -31.70 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 2.05 Total: 56.08 kcal Total: -81.30 6.12 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.259 kcal (2) G-P(sol) polarization free energy of solvation -81.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds